EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000061058 (Gene tree)
Gene ID
117180
Gene Symbol
Csde1
Alias
LOC100362464|Unr
Full Name
cold shock domain containing E1
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Plus strand
Length
27788 bases
Position
chr2:205525204-205552991
Accession
619726
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000069264CSDPF00313.223.7e-8515
ENSRNOP00000069264CSDPF00313.223.7e-8525
ENSRNOP00000069264CSDPF00313.223.7e-8535
ENSRNOP00000069264CSDPF00313.223.7e-8545
ENSRNOP00000069264CSDPF00313.223.7e-8555
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000091210-3728-ENSRNOP00000069264798 (aa)XP_003751901P18395
Gene Model
Click here to download ENSRNOG00000061058's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000061058's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000061058Csde110098.622ENSG00000009307CSDE1100100.000Homo_sapiens
ENSRNOG00000061058Csde110074.878ENSAPOG00000015538csde110074.727Acanthochromis_polyacanthus
ENSRNOG00000061058Csde110093.734ENSAMEG00000017129CSDE19493.734Ailuropoda_melanoleuca
ENSRNOG00000061058Csde19176.757ENSACIG00000015175csde110076.757Amphilophus_citrinellus
ENSRNOG00000061058Csde110075.000ENSAOCG00000011510csde110074.157Amphiprion_ocellaris
ENSRNOG00000061058Csde110076.779ENSAPEG00000007194csde110075.000Amphiprion_percula
ENSRNOG00000061058Csde110073.783ENSATEG00000003864csde110073.783Anabas_testudineus
ENSRNOG00000061058Csde110087.594ENSAPLG00000008797CSDE110087.594Anas_platyrhynchos
ENSRNOG00000061058Csde110091.604ENSACAG00000003120CSDE110091.604Anolis_carolinensis
ENSRNOG00000061058Csde17873.469ENSANAG00000028396-9173.469Aotus_nancymaae
ENSRNOG00000061058Csde110098.246ENSANAG00000024665CSDE19598.246Aotus_nancymaae
ENSRNOG00000061058Csde110076.375ENSACLG00000013296csde110076.375Astatotilapia_calliptera
ENSRNOG00000061058Csde110073.441ENSAMXG00000007436csde110073.441Astyanax_mexicanus
ENSRNOG00000061058Csde110098.371ENSBTAG00000000678CSDE110094.486Bos_taurus
ENSRNOG00000061058Csde110098.371ENSCJAG00000012565CSDE19598.371Callithrix_jacchus
ENSRNOG00000061058Csde19894.508ENSCAFG00000009618CSDE19494.508Canis_familiaris
ENSRNOG00000061058Csde110094.612ENSCAFG00020000481CSDE110094.612Canis_lupus_dingo
ENSRNOG00000061058Csde110098.371ENSCHIG00000017250CSDE110094.486Capra_hircus
ENSRNOG00000061058Csde110098.246ENSTSYG00000003747CSDE110098.246Carlito_syrichta
ENSRNOG00000061058Csde110072.532ENSCAPG00000015128CSDE110072.532Cavia_aperea
ENSRNOG00000061058Csde110093.233ENSCPOG00000040388CSDE110093.233Cavia_porcellus
ENSRNOG00000061058Csde19576.238ENSCCAG00000033677-9976.010Cebus_capucinus
ENSRNOG00000061058Csde19673.719ENSCCAG00000030878-9173.719Cebus_capucinus
ENSRNOG00000061058Csde110098.371ENSCCAG00000036794CSDE110098.371Cebus_capucinus
ENSRNOG00000061058Csde110098.622ENSCATG00000036962CSDE19898.812Cercocebus_atys
ENSRNOG00000061058Csde110098.622ENSCLAG00000006618CSDE110098.622Chinchilla_lanigera
ENSRNOG00000061058Csde110098.622ENSCSAG00000001658CSDE19598.622Chlorocebus_sabaeus
ENSRNOG00000061058Csde110099.080ENSCHOG00000000918CSDE18599.080Choloepus_hoffmanni
ENSRNOG00000061058Csde110091.855ENSCPBG00000016547CSDE110091.855Chrysemys_picta_bellii
ENSRNOG00000061058Csde19742.543ENSCING00000014465-9642.543Ciona_intestinalis
ENSRNOG00000061058Csde19642.007ENSCSAVG00000008100-9842.007Ciona_savignyi
ENSRNOG00000061058Csde19992.818ENSCANG00000031069-9992.818Colobus_angolensis_palliatus
ENSRNOG00000061058Csde110098.622ENSCANG00000035096CSDE19898.812Colobus_angolensis_palliatus
ENSRNOG00000061058Csde110099.749ENSCGRG00001016833-10099.749Cricetulus_griseus_chok1gshd
ENSRNOG00000061058Csde110079.323ENSCGRG00001014011-10079.323Cricetulus_griseus_chok1gshd
ENSRNOG00000061058Csde110075.862ENSCGRG00000005831-10075.862Cricetulus_griseus_crigri
ENSRNOG00000061058Csde19799.777ENSCGRG00000002225-10099.777Cricetulus_griseus_crigri
ENSRNOG00000061058Csde110074.119ENSCSEG00000002620csde110073.625Cynoglossus_semilaevis
ENSRNOG00000061058Csde110076.000ENSCVAG00000001344csde110075.776Cyprinodon_variegatus
ENSRNOG00000061058Csde110077.278ENSDARG00000074758csde110077.278Danio_rerio
ENSRNOG00000061058Csde110094.368ENSDNOG00000010287-9394.368Dasypus_novemcinctus
ENSRNOG00000061058Csde110098.496ENSDORG00000011609Csde110098.496Dipodomys_ordii
ENSRNOG00000061058Csde19549.592FBgn0263352Unr8148.996Drosophila_melanogaster
ENSRNOG00000061058Csde19082.655ENSETEG00000006280-10082.655Echinops_telfairi
ENSRNOG00000061058Csde17668.212ENSETEG00000007109-9968.212Echinops_telfairi
ENSRNOG00000061058Csde19398.347ENSETEG00000002491-7498.347Echinops_telfairi
ENSRNOG00000061058Csde19973.275ENSETEG00000013678-9973.275Echinops_telfairi
ENSRNOG00000061058Csde19955.774ENSEBUG00000008647csde19954.048Eptatretus_burgeri
ENSRNOG00000061058Csde110098.496ENSEASG00005006284CSDE110098.496Equus_asinus_asinus
ENSRNOG00000061058Csde110098.496ENSECAG00000020885CSDE110098.496Equus_caballus
ENSRNOG00000061058Csde19297.906ENSEEUG00000006286CSDE16897.906Erinaceus_europaeus
ENSRNOG00000061058Csde110073.430ENSELUG00000015507csde110072.264Esox_lucius
ENSRNOG00000061058Csde110098.747ENSFCAG00000029266CSDE110094.862Felis_catus
ENSRNOG00000061058Csde110091.479ENSFALG00000003407CSDE110091.479Ficedula_albicollis
ENSRNOG00000061058Csde110098.622ENSFDAG00000007882CSDE110098.622Fukomys_damarensis
ENSRNOG00000061058Csde110076.155ENSFHEG00000010799csde110076.155Fundulus_heteroclitus
ENSRNOG00000061058Csde19976.471ENSGMOG00000012731csde110076.471Gadus_morhua
ENSRNOG00000061058Csde19891.432ENSGALG00000002139CSDE19891.432Gallus_gallus
ENSRNOG00000061058Csde19372.198ENSGAFG00000005241csde19572.198Gambusia_affinis
ENSRNOG00000061058Csde19976.875ENSGACG00000004544csde110076.875Gasterosteus_aculeatus
ENSRNOG00000061058Csde110091.479ENSGAGG00000017685CSDE110091.479Gopherus_agassizii
ENSRNOG00000061058Csde110098.622ENSGGOG00000002164CSDE110094.737Gorilla_gorilla
ENSRNOG00000061058Csde110075.746ENSHBUG00000020315csde110073.750Haplochromis_burtoni
ENSRNOG00000061058Csde19689.532ENSHGLG00000010039-10089.532Heterocephalus_glaber_female
ENSRNOG00000061058Csde110082.456ENSHGLG00000019549-10082.456Heterocephalus_glaber_female
ENSRNOG00000061058Csde19982.828ENSHGLG00000007471-9882.828Heterocephalus_glaber_female
ENSRNOG00000061058Csde19989.006ENSHGLG00000008555-9989.006Heterocephalus_glaber_female
ENSRNOG00000061058Csde110086.090ENSHGLG00000003829-10086.090Heterocephalus_glaber_female
ENSRNOG00000061058Csde110089.223ENSHGLG00000009620-10089.474Heterocephalus_glaber_female
ENSRNOG00000061058Csde19980.176ENSHGLG00000000650-9980.176Heterocephalus_glaber_female
ENSRNOG00000061058Csde110081.203ENSHGLG00100012072-9883.470Heterocephalus_glaber_male
ENSRNOG00000061058Csde19480.615ENSHGLG00100004195-10080.615Heterocephalus_glaber_male
ENSRNOG00000061058Csde110077.444ENSHGLG00100001846-10077.444Heterocephalus_glaber_male
ENSRNOG00000061058Csde19689.310ENSHGLG00100006910-10089.310Heterocephalus_glaber_male
ENSRNOG00000061058Csde19782.183ENSHGLG00100004833-10082.183Heterocephalus_glaber_male
ENSRNOG00000061058Csde19980.429ENSHGLG00100007287-9880.429Heterocephalus_glaber_male
ENSRNOG00000061058Csde110098.872ENSHGLG00100019438-10098.872Heterocephalus_glaber_male
ENSRNOG00000061058Csde19984.481ENSHGLG00100002245-9984.481Heterocephalus_glaber_male
ENSRNOG00000061058Csde110075.500ENSHCOG00000004158csde110072.875Hippocampus_comes
ENSRNOG00000061058Csde110073.192ENSIPUG00000000355csde110073.192Ictalurus_punctatus
ENSRNOG00000061058Csde18682.661ENSSTOG00000032722-9882.661Ictidomys_tridecemlineatus
ENSRNOG00000061058Csde110080.273ENSSTOG00000030994-10080.273Ictidomys_tridecemlineatus
ENSRNOG00000061058Csde110098.997ENSJJAG00000019571Csde110098.997Jaculus_jaculus
ENSRNOG00000061058Csde110076.025ENSKMAG00000005685csde110075.773Kryptolebias_marmoratus
ENSRNOG00000061058Csde110074.878ENSLBEG00000014770csde110074.032Labrus_bergylta
ENSRNOG00000061058Csde110079.404ENSLACG00000018452CSDE19479.404Latimeria_chalumnae
ENSRNOG00000061058Csde110079.474ENSLOCG00000010413csde19479.474Lepisosteus_oculatus
ENSRNOG00000061058Csde110093.233ENSLAFG00000007150CSDE19693.233Loxodonta_africana
ENSRNOG00000061058Csde110098.622ENSMFAG00000003674CSDE19898.812Macaca_fascicularis
ENSRNOG00000061058Csde110098.622ENSMMUG00000001974CSDE110094.737Macaca_mulatta
ENSRNOG00000061058Csde110098.622ENSMNEG00000045247CSDE19898.812Macaca_nemestrina
ENSRNOG00000061058Csde110098.371ENSMLEG00000038673CSDE19598.371Mandrillus_leucophaeus
ENSRNOG00000061058Csde110075.610ENSMAMG00000008821csde110074.657Mastacembelus_armatus
ENSRNOG00000061058Csde110076.375ENSMZEG00005021675csde110073.750Maylandia_zebra
ENSRNOG00000061058Csde19891.304ENSMGAG00000016381CSDE19891.304Meleagris_gallopavo
ENSRNOG00000061058Csde110099.749ENSMAUG00000014031Csde110099.749Mesocricetus_auratus
ENSRNOG00000061058Csde110097.870ENSMICG00000002050CSDE19998.438Microcebus_murinus
ENSRNOG00000061058Csde110099.749ENSMOCG00000018960Csde110099.749Microtus_ochrogaster
ENSRNOG00000061058Csde110074.282ENSMMOG00000015075csde110074.282Mola_mola
ENSRNOG00000061058Csde110095.363ENSMODG00000004685CSDE110095.363Monodelphis_domestica
ENSRNOG00000061058Csde110074.157ENSMALG00000007132csde110074.157Monopterus_albus
ENSRNOG00000061058Csde110099.499MGP_CAROLIEiJ_G0025444Csde110099.499Mus_caroli
ENSRNOG00000061058Csde110099.624ENSMUSG00000068823Csde110099.624Mus_musculus
ENSRNOG00000061058Csde110099.875MGP_PahariEiJ_G0026888Csde110099.875Mus_pahari
ENSRNOG00000061058Csde110099.875MGP_SPRETEiJ_G0026394Csde110099.875Mus_spretus
ENSRNOG00000061058Csde19898.723ENSMPUG00000005753CSDE19998.723Mustela_putorius_furo
ENSRNOG00000061058Csde110093.860ENSMLUG00000005681CSDE19493.860Myotis_lucifugus
ENSRNOG00000061058Csde19771.269ENSNGAG00000012599-10071.269Nannospalax_galili
ENSRNOG00000061058Csde110099.373ENSNGAG00000021929Csde110099.373Nannospalax_galili
ENSRNOG00000061058Csde110073.750ENSNBRG00000020808csde110073.750Neolamprologus_brichardi
ENSRNOG00000061058Csde110098.496ENSNLEG00000004842CSDE19598.496Nomascus_leucogenys
ENSRNOG00000061058Csde19896.117ENSMEUG00000002677CSDE19696.117Notamacropus_eugenii
ENSRNOG00000061058Csde19897.087ENSOPRG00000005002CSDE17697.087Ochotona_princeps
ENSRNOG00000061058Csde110098.246ENSODEG00000007383-10098.246Octodon_degus
ENSRNOG00000061058Csde19767.920ENSODEG00000005979-9867.920Octodon_degus
ENSRNOG00000061058Csde110074.603ENSONIG00000009309csde110074.603Oreochromis_niloticus
ENSRNOG00000061058Csde110079.426ENSOANG00000003346-10079.426Ornithorhynchus_anatinus
ENSRNOG00000061058Csde110097.870ENSOCUG00000016438CSDE19597.870Oryctolagus_cuniculus
ENSRNOG00000061058Csde110074.725ENSORLG00000000707csde110074.725Oryzias_latipes
ENSRNOG00000061058Csde110076.500ENSORLG00020005148csde110074.725Oryzias_latipes_hni
ENSRNOG00000061058Csde110076.500ENSORLG00015019415csde110074.725Oryzias_latipes_hsok
ENSRNOG00000061058Csde110077.029ENSOMEG00000015656csde110075.244Oryzias_melastigma
ENSRNOG00000061058Csde110094.862ENSOGAG00000012127CSDE19494.862Otolemur_garnettii
ENSRNOG00000061058Csde110094.612ENSOARG00000020034CSDE19494.612Ovis_aries
ENSRNOG00000061058Csde110098.622ENSPPAG00000025861CSDE110094.737Pan_paniscus
ENSRNOG00000061058Csde110098.747ENSPPRG00000006747CSDE19598.747Panthera_pardus
ENSRNOG00000061058Csde110098.747ENSPTIG00000015468CSDE110098.747Panthera_tigris_altaica
ENSRNOG00000061058Csde110098.622ENSPTRG00000033721CSDE110098.622Pan_troglodytes
ENSRNOG00000061058Csde110098.622ENSPANG00000018873CSDE110094.737Papio_anubis
ENSRNOG00000061058Csde110073.750ENSPKIG00000009459csde110073.750Paramormyrops_kingsleyae
ENSRNOG00000061058Csde19694.690ENSPSIG00000003823CSDE19694.690Pelodiscus_sinensis
ENSRNOG00000061058Csde110074.032ENSPMGG00000000772csde110074.032Periophthalmus_magnuspinnatus
ENSRNOG00000061058Csde110099.749ENSPEMG00000020357-10099.749Peromyscus_maniculatus_bairdii
ENSRNOG00000061058Csde110095.489ENSPCIG00000022587CSDE110095.489Phascolarctos_cinereus
ENSRNOG00000061058Csde19974.845ENSPFOG00000012664csde110075.466Poecilia_formosa
ENSRNOG00000061058Csde19770.661ENSPLAG00000017680csde19370.661Poecilia_latipinna
ENSRNOG00000061058Csde19870.561ENSPMEG00000005094csde19670.561Poecilia_mexicana
ENSRNOG00000061058Csde110075.528ENSPREG00000011631csde110073.469Poecilia_reticulata
ENSRNOG00000061058Csde110098.496ENSPPYG00000000996CSDE110098.496Pongo_abelii
ENSRNOG00000061058Csde110098.098ENSPCAG00000014368CSDE19098.098Procavia_capensis
ENSRNOG00000061058Csde110098.496ENSPCOG00000017893CSDE110098.496Propithecus_coquereli
ENSRNOG00000061058Csde19083.955ENSPCOG00000008223-9083.955Propithecus_coquereli
ENSRNOG00000061058Csde110088.847ENSPVAG00000008225CSDE19588.847Pteropus_vampyrus
ENSRNOG00000061058Csde110075.746ENSPNYG00000013745csde110073.750Pundamilia_nyererei
ENSRNOG00000061058Csde110076.529ENSPNAG00000001958csde110073.908Pygocentrus_nattereri
ENSRNOG00000061058Csde110092.741ENSRBIG00000038966-9492.741Rhinopithecus_bieti
ENSRNOG00000061058Csde110094.862ENSRBIG00000038088-9997.235Rhinopithecus_bieti
ENSRNOG00000061058Csde110098.622ENSRROG00000043101CSDE19898.578Rhinopithecus_roxellana
ENSRNOG00000061058Csde110098.371ENSSBOG00000035592CSDE19598.371Saimiri_boliviensis_boliviensis
ENSRNOG00000061058Csde110091.479ENSSHAG00000009831CSDE110091.479Sarcophilus_harrisii
ENSRNOG00000061058Csde110075.995ENSSFOG00015007498csde110076.368Scleropages_formosus
ENSRNOG00000061058Csde110075.366ENSSMAG00000007203csde110075.366Scophthalmus_maximus
ENSRNOG00000061058Csde110075.000ENSSDUG00000015380csde110074.157Seriola_dumerili
ENSRNOG00000061058Csde110076.779ENSSLDG00000008819csde110076.779Seriola_lalandi_dorsalis
ENSRNOG00000061058Csde110093.734ENSSARG00000000738CSDE19493.734Sorex_araneus
ENSRNOG00000061058Csde110091.228ENSSPUG00000008714CSDE110091.228Sphenodon_punctatus
ENSRNOG00000061058Csde110076.654ENSSPAG00000000716csde110074.032Stegastes_partitus
ENSRNOG00000061058Csde110098.496ENSSSCG00000006752CSDE110094.612Sus_scrofa
ENSRNOG00000061058Csde110090.500ENSTGUG00000000972CSDE110090.500Taeniopygia_guttata
ENSRNOG00000061058Csde110071.250ENSTRUG00000007996csde110071.250Takifugu_rubripes
ENSRNOG00000061058Csde19380.228ENSTNIG00000010878csde110080.228Tetraodon_nigroviridis
ENSRNOG00000061058Csde19398.718ENSTBEG00000011880-6298.718Tupaia_belangeri
ENSRNOG00000061058Csde110093.860ENSTTRG00000015583CSDE19493.860Tursiops_truncatus
ENSRNOG00000061058Csde19089.264ENSUAMG00000024289-9989.264Ursus_americanus
ENSRNOG00000061058Csde18999.023ENSUAMG00000021779-9999.023Ursus_americanus
ENSRNOG00000061058Csde19798.812ENSUMAG00000011714-9998.812Ursus_maritimus
ENSRNOG00000061058Csde110087.343ENSUMAG00000009720-9787.343Ursus_maritimus
ENSRNOG00000061058Csde110097.183ENSVPAG00000000749CSDE17997.183Vicugna_pacos
ENSRNOG00000061058Csde19098.246ENSVVUG00000009890CSDE19498.246Vulpes_vulpes
ENSRNOG00000061058Csde110085.144ENSXETG00000021448csde110085.144Xenopus_tropicalis
ENSRNOG00000061058Csde19285.455ENSXCOG00000000035csde18585.455Xiphophorus_couchianus
ENSRNOG00000061058Csde110076.750ENSXMAG00000009080csde110074.757Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding-IEAFunction
GO:0005794Golgi apparatus-IEAComponent
GO:0005794Golgi apparatus-ISOComponent
GO:0005829cytosol-IEAComponent
GO:0005829cytosol-ISOComponent
GO:0005886plasma membrane-IEAComponent
GO:0005886plasma membrane-ISOComponent
GO:0070937CRD-mediated mRNA stability complex-IEAComponent
GO:0070937CRD-mediated mRNA stability complex-ISOComponent
GO:0070966nuclear-transcribed mRNA catabolic process, no-go decay-IEAProcess
GO:0070966nuclear-transcribed mRNA catabolic process, no-go decay-ISOProcess

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