EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000061146 (Gene tree)
Gene ID: 499709
Gene Symbol: Gar1
Alias: LOC499709|Nola1
Full Name: GAR1 ribonucleoprotein
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 7279 bases
Position: chr2:235250453-235257731
Accession: 1563995
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000076165	Gar1	PF04410.14	1e-39	1	1
ENSRNOP00000074835	Gar1	PF04410.14	2e-39	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000093472	-	754	XM_006232006	ENSRNOP00000076165	171 (aa)	XP_006232068	A0A1W2Q680
ENSRNOT00000078074	-	1352	XM_008761519	ENSRNOP00000074835	226 (aa)	-	Q6AYA1

Gene Model

Click here to download ENSRNOG00000061146's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000061146's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000061146	Gar1	100	96.491	ENSG00000109534	GAR1	78	96.491	Homo_sapiens
ENSRNOG00000061146	Gar1	63	96.262	ENSAPOG00000019754	gar1	51	96.296	Acanthochromis_polyacanthus
ENSRNOG00000061146	Gar1	63	96.262	ENSAMEG00000004605	GAR1	54	95.455	Ailuropoda_melanoleuca
ENSRNOG00000061146	Gar1	63	96.262	ENSAOCG00000020947	gar1	50	96.296	Amphiprion_ocellaris
ENSRNOG00000061146	Gar1	63	96.262	ENSAPEG00000001676	gar1	50	96.296	Amphiprion_percula
ENSRNOG00000061146	Gar1	63	96.262	ENSATEG00000003733	gar1	50	96.296	Anabas_testudineus
ENSRNOG00000061146	Gar1	62	91.509	ENSAPLG00000010926	GAR1	59	91.589	Anas_platyrhynchos
ENSRNOG00000061146	Gar1	62	92.453	ENSACAG00000010031	GAR1	50	92.523	Anolis_carolinensis
ENSRNOG00000061146	Gar1	100	95.906	ENSANAG00000021608	GAR1	78	95.906	Aotus_nancymaae
ENSRNOG00000061146	Gar1	63	97.196	ENSBTAG00000000748	GAR1	52	96.364	Bos_taurus
ENSRNOG00000061146	Gar1	57	61.224	WBGene00022046	Y66H1A.4	50	57.724	Caenorhabditis_elegans
ENSRNOG00000061146	Gar1	100	95.322	ENSCJAG00000004041	GAR1	78	95.322	Callithrix_jacchus
ENSRNOG00000061146	Gar1	61	97.115	ENSCAFG00020015566	GAR1	57	96.364	Canis_lupus_dingo
ENSRNOG00000061146	Gar1	92	79.452	ENSCHIG00000011049	-	56	82.727	Capra_hircus
ENSRNOG00000061146	Gar1	64	96.364	ENSCHIG00000016026	-	53	96.364	Capra_hircus
ENSRNOG00000061146	Gar1	63	89.720	ENSTSYG00000026632	-	56	89.091	Carlito_syrichta
ENSRNOG00000061146	Gar1	63	98.131	ENSTSYG00000013668	-	52	97.273	Carlito_syrichta
ENSRNOG00000061146	Gar1	64	96.364	ENSCPOG00000004216	GAR1	51	96.364	Cavia_porcellus
ENSRNOG00000061146	Gar1	100	95.906	ENSCCAG00000029372	GAR1	78	95.906	Cebus_capucinus
ENSRNOG00000061146	Gar1	100	95.906	ENSCATG00000021854	GAR1	85	95.906	Cercocebus_atys
ENSRNOG00000061146	Gar1	64	94.545	ENSCLAG00000005335	GAR1	70	98.214	Chinchilla_lanigera
ENSRNOG00000061146	Gar1	100	95.906	ENSCSAG00000003922	GAR1	85	95.906	Chlorocebus_sabaeus
ENSRNOG00000061146	Gar1	62	94.340	ENSCPBG00000004310	GAR1	54	94.393	Chrysemys_picta_bellii
ENSRNOG00000061146	Gar1	57	70.408	ENSCING00000005744	-	52	66.667	Ciona_intestinalis
ENSRNOG00000061146	Gar1	64	96.364	ENSCANG00000039262	GAR1	51	96.364	Colobus_angolensis_palliatus
ENSRNOG00000061146	Gar1	100	97.093	ENSCGRG00001003919	Gar1	77	97.093	Cricetulus_griseus_chok1gshd
ENSRNOG00000061146	Gar1	54	98.925	ENSCGRG00000010165	-	94	95.122	Cricetulus_griseus_crigri
ENSRNOG00000061146	Gar1	63	94.393	ENSCSEG00000003525	gar1	51	93.860	Cynoglossus_semilaevis
ENSRNOG00000061146	Gar1	80	83.824	ENSCVAG00000002103	gar1	72	84.000	Cyprinodon_variegatus
ENSRNOG00000061146	Gar1	63	97.196	ENSDNOG00000037632	GAR1	56	96.364	Dasypus_novemcinctus
ENSRNOG00000061146	Gar1	65	95.495	ENSDORG00000000482	Gar1	51	95.455	Dipodomys_ordii
ENSRNOG00000061146	Gar1	100	93.064	ENSEASG00005004658	GAR1	77	93.064	Equus_asinus_asinus
ENSRNOG00000061146	Gar1	64	96.364	ENSECAG00000013624	GAR1	56	96.364	Equus_caballus
ENSRNOG00000061146	Gar1	63	97.196	ENSFCAG00000040791	-	53	96.364	Felis_catus
ENSRNOG00000061146	Gar1	88	54.032	ENSFCAG00000025841	-	57	61.667	Felis_catus
ENSRNOG00000061146	Gar1	79	86.667	ENSFHEG00000008068	gar1	63	86.567	Fundulus_heteroclitus
ENSRNOG00000061146	Gar1	63	96.262	ENSGAFG00000016833	gar1	52	92.623	Gambusia_affinis
ENSRNOG00000061146	Gar1	61	95.192	ENSGAGG00000004393	GAR1	55	93.458	Gopherus_agassizii
ENSRNOG00000061146	Gar1	100	97.076	ENSGGOG00000008681	GAR1	78	97.076	Gorilla_gorilla
ENSRNOG00000061146	Gar1	99	70.000	ENSGGOG00000036205	-	55	78.182	Gorilla_gorilla
ENSRNOG00000061146	Gar1	57	98.969	ENSHBUG00000023860	gar1	50	98.969	Haplochromis_burtoni
ENSRNOG00000061146	Gar1	63	98.131	ENSHGLG00000000493	GAR1	74	100.000	Heterocephalus_glaber_female
ENSRNOG00000061146	Gar1	64	91.818	ENSIPUG00000003194	gar1	51	93.519	Ictalurus_punctatus
ENSRNOG00000061146	Gar1	64	95.413	ENSSTOG00000005577	GAR1	73	96.429	Ictidomys_tridecemlineatus
ENSRNOG00000061146	Gar1	65	90.991	ENSKMAG00000010402	gar1	51	93.519	Kryptolebias_marmoratus
ENSRNOG00000061146	Gar1	62	89.623	ENSLACG00000003306	GAR1	64	89.720	Latimeria_chalumnae
ENSRNOG00000061146	Gar1	63	84.259	ENSMFAG00000003572	-	54	82.727	Macaca_fascicularis
ENSRNOG00000061146	Gar1	100	95.906	ENSMFAG00000024592	GAR1	78	95.906	Macaca_fascicularis
ENSRNOG00000061146	Gar1	100	95.906	ENSMMUG00000021225	GAR1	78	95.906	Macaca_mulatta
ENSRNOG00000061146	Gar1	100	95.906	ENSMNEG00000042594	GAR1	78	95.906	Macaca_nemestrina
ENSRNOG00000061146	Gar1	100	95.322	ENSMLEG00000002496	GAR1	78	95.322	Mandrillus_leucophaeus
ENSRNOG00000061146	Gar1	100	96.552	ENSMAUG00000016788	Gar1	100	95.385	Mesocricetus_auratus
ENSRNOG00000061146	Gar1	65	95.536	ENSMICG00000003326	GAR1	51	96.364	Microcebus_murinus
ENSRNOG00000061146	Gar1	64	98.165	ENSMOCG00000001340	Gar1	71	100.000	Microtus_ochrogaster
ENSRNOG00000061146	Gar1	88	76.159	ENSMMOG00000004156	gar1	53	94.444	Mola_mola
ENSRNOG00000061146	Gar1	88	77.483	ENSMALG00000009672	gar1	50	95.370	Monopterus_albus
ENSRNOG00000061146	Gar1	64	99.083	MGP_CAROLIEiJ_G0025627	Gar1	71	100.000	Mus_caroli
ENSRNOG00000061146	Gar1	100	93.889	ENSMUSG00000028010	Gar1	91	93.889	Mus_musculus
ENSRNOG00000061146	Gar1	64	99.091	MGP_PahariEiJ_G0027076	Gar1	71	100.000	Mus_pahari
ENSRNOG00000061146	Gar1	64	99.091	MGP_SPRETEiJ_G0026580	Gar1	71	100.000	Mus_spretus
ENSRNOG00000061146	Gar1	63	97.196	ENSMPUG00000008615	GAR1	53	96.364	Mustela_putorius_furo
ENSRNOG00000061146	Gar1	64	97.273	ENSNGAG00000008268	Gar1	73	98.214	Nannospalax_galili
ENSRNOG00000061146	Gar1	100	95.322	ENSNLEG00000016578	GAR1	78	95.322	Nomascus_leucogenys
ENSRNOG00000061146	Gar1	92	64.331	ENSNLEG00000034282	-	56	81.818	Nomascus_leucogenys
ENSRNOG00000061146	Gar1	63	96.262	ENSODEG00000011083	GAR1	57	94.545	Octodon_degus
ENSRNOG00000061146	Gar1	62	95.283	ENSOANG00000003665	GAR1	78	76.000	Ornithorhynchus_anatinus
ENSRNOG00000061146	Gar1	63	97.196	ENSOCUG00000003901	GAR1	51	96.364	Oryctolagus_cuniculus
ENSRNOG00000061146	Gar1	63	97.196	ENSOGAG00000004693	GAR1	52	96.364	Otolemur_garnettii
ENSRNOG00000061146	Gar1	63	97.196	ENSOARG00000004910	GAR1	52	96.364	Ovis_aries
ENSRNOG00000061146	Gar1	100	96.491	ENSPPAG00000014081	GAR1	94	93.878	Pan_paniscus
ENSRNOG00000061146	Gar1	63	97.196	ENSPPRG00000023697	GAR1	53	96.364	Panthera_pardus
ENSRNOG00000061146	Gar1	63	97.196	ENSPTIG00000021565	GAR1	53	96.364	Panthera_tigris_altaica
ENSRNOG00000061146	Gar1	99	64.118	ENSPTRG00000049340	-	51	79.630	Pan_troglodytes
ENSRNOG00000061146	Gar1	64	97.273	ENSPTRG00000016364	GAR1	56	97.273	Pan_troglodytes
ENSRNOG00000061146	Gar1	100	95.906	ENSPANG00000000639	GAR1	78	95.906	Papio_anubis
ENSRNOG00000061146	Gar1	60	93.137	ENSPMGG00000022004	gar1	68	84.496	Periophthalmus_magnuspinnatus
ENSRNOG00000061146	Gar1	100	97.110	ENSPEMG00000015838	Gar1	77	97.110	Peromyscus_maniculatus_bairdii
ENSRNOG00000061146	Gar1	63	95.327	ENSPFOG00000024155	gar1	51	95.370	Poecilia_formosa
ENSRNOG00000061146	Gar1	63	95.327	ENSPLAG00000015056	gar1	51	95.370	Poecilia_latipinna
ENSRNOG00000061146	Gar1	63	96.262	ENSPMEG00000009320	gar1	52	96.296	Poecilia_mexicana
ENSRNOG00000061146	Gar1	63	95.327	ENSPREG00000010377	gar1	64	83.893	Poecilia_reticulata
ENSRNOG00000061146	Gar1	100	96.491	ENSPPYG00000014996	GAR1	78	96.491	Pongo_abelii
ENSRNOG00000061146	Gar1	63	97.196	ENSPCOG00000027049	GAR1	56	97.273	Propithecus_coquereli
ENSRNOG00000061146	Gar1	100	95.322	ENSRBIG00000019547	GAR1	85	95.322	Rhinopithecus_bieti
ENSRNOG00000061146	Gar1	65	81.250	ENSRBIG00000042411	-	53	80.909	Rhinopithecus_bieti
ENSRNOG00000061146	Gar1	100	95.906	ENSRROG00000028454	GAR1	85	95.906	Rhinopithecus_roxellana
ENSRNOG00000061146	Gar1	65	81.250	ENSRROG00000044348	-	53	80.909	Rhinopithecus_roxellana
ENSRNOG00000061146	Gar1	63	98.131	ENSSBOG00000024785	GAR1	51	97.273	Saimiri_boliviensis_boliviensis
ENSRNOG00000061146	Gar1	63	93.458	ENSSMAG00000009976	gar1	52	92.982	Scophthalmus_maximus
ENSRNOG00000061146	Gar1	63	95.327	ENSSLDG00000023264	gar1	51	95.370	Seriola_lalandi_dorsalis
ENSRNOG00000061146	Gar1	62	95.283	ENSSPUG00000008707	GAR1	60	95.327	Sphenodon_punctatus
ENSRNOG00000061146	Gar1	63	96.262	ENSSPAG00000005974	gar1	50	95.614	Stegastes_partitus
ENSRNOG00000061146	Gar1	64	96.364	ENSSSCG00000009137	GAR1	54	96.364	Sus_scrofa
ENSRNOG00000061146	Gar1	58	91.919	ENSTGUG00000004185	GAR1	68	92.000	Taeniopygia_guttata
ENSRNOG00000061146	Gar1	63	92.523	ENSTRUG00000020580	gar1	52	92.593	Takifugu_rubripes
ENSRNOG00000061146	Gar1	61	95.192	ENSTNIG00000013023	gar1	61	95.370	Tetraodon_nigroviridis
ENSRNOG00000061146	Gar1	61	97.115	ENSUAMG00000005652	GAR1	57	96.364	Ursus_americanus
ENSRNOG00000061146	Gar1	63	97.196	ENSUMAG00000000776	GAR1	53	96.364	Ursus_maritimus
ENSRNOG00000061146	Gar1	63	97.196	ENSVVUG00000017612	GAR1	57	96.364	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000454	snoRNA guided rRNA pseudouridine synthesis	21873635.	IBA	Process
GO:0000454	snoRNA guided rRNA pseudouridine synthesis	12446766.	IDA	Process
GO:0000784	nuclear chromosome, telomeric region	-	IEA	Component
GO:0000784	nuclear chromosome, telomeric region	-	ISO	Component
GO:0001522	pseudouridine synthesis	-	IEA	Process
GO:0001650	fibrillar center	-	IEA	Component
GO:0001650	fibrillar center	-	ISO	Component
GO:0003723	RNA binding	-	IEA	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0005515	protein binding	12446766.	IPI	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005697	telomerase holoenzyme complex	-	ISO	Component
GO:0005697	telomerase holoenzyme complex	-	ISS	Component
GO:0006364	rRNA processing	-	IEA	Process
GO:0007004	telomere maintenance via telomerase	-	ISO	Process
GO:0007004	telomere maintenance via telomerase	-	ISS	Process
GO:0015030	Cajal body	-	IEA	Component
GO:0031429	box H/ACA snoRNP complex	21873635.	IBA	Component
GO:0031429	box H/ACA snoRNP complex	12446766.	IDA	Component
GO:0031429	box H/ACA snoRNP complex	-	IEA	Component
GO:0031429	box H/ACA snoRNP complex	-	ISO	Component
GO:0034513	box H/ACA snoRNA binding	21873635.	IBA	Function
GO:0034513	box H/ACA snoRNA binding	-	ISO	Function
GO:0070034	telomerase RNA binding	-	IEA	Function
GO:0070034	telomerase RNA binding	-	ISO	Function
GO:0090661	box H/ACA telomerase RNP complex	-	IEA	Component
GO:0090661	box H/ACA telomerase RNP complex	-	ISO	Component