EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000061795 (Gene tree)
Gene ID: 474154
Gene Symbol: Rbm4b
Alias: LOC474154|MGC105881
Full Name: RNA binding motif protein 4B
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 10090 bases
Position: chr1:220009397-220019486
Accession: 1359343
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000071527	zf-CCHC	PF00098.23	1.8e-07	1	1
ENSRNOP00000071527	RRM_5	PF13893.6	2e-08	1	2
ENSRNOP00000071527	RRM_5	PF13893.6	2e-08	2	2
ENSRNOP00000071527	RRM_1	PF00076.22	7.4e-35	1	2
ENSRNOP00000071527	RRM_1	PF00076.22	7.4e-35	2	2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000084410	-	1799	XM_008760164	ENSRNOP00000071527	357 (aa)	XP_008758386	Q64LC9

Gene Model

Click here to download ENSRNOG00000061795's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000061795's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000061795	Rbm4b	100	86.027	ENSRNOG00000050741	Rbm4	97	100.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000061795	Rbm4b	100	96.936	ENSG00000173914	RBM4B	100	96.936	Homo_sapiens
ENSRNOG00000061795	Rbm4b	96	98.780	ENSG00000173933	RBM4	97	98.551	Homo_sapiens
ENSRNOG00000061795	Rbm4b	99	62.568	ENSG00000248643	RBM14-RBM4	100	61.096	Homo_sapiens
ENSRNOG00000061795	Rbm4b	100	86.301	ENSAMEG00000010914	RBM4	100	85.753	Ailuropoda_melanoleuca
ENSRNOG00000061795	Rbm4b	100	97.214	ENSAMEG00000010906	RBM4B	100	97.214	Ailuropoda_melanoleuca
ENSRNOG00000061795	Rbm4b	100	96.657	ENSANAG00000023478	RBM4B	100	96.657	Aotus_nancymaae
ENSRNOG00000061795	Rbm4b	100	87.017	ENSBTAG00000031688	RBM4	100	86.464	Bos_taurus
ENSRNOG00000061795	Rbm4b	100	96.379	ENSBTAG00000000423	RBM4B	100	96.379	Bos_taurus
ENSRNOG00000061795	Rbm4b	100	96.936	ENSCJAG00000013666	RBM4B	100	96.936	Callithrix_jacchus
ENSRNOG00000061795	Rbm4b	100	86.301	ENSCAFG00000012388	RBM4	100	85.753	Canis_familiaris
ENSRNOG00000061795	Rbm4b	100	96.936	ENSCAFG00000012378	RBM4B	100	96.936	Canis_familiaris
ENSRNOG00000061795	Rbm4b	100	86.301	ENSCAFG00020015515	RBM4	100	85.753	Canis_lupus_dingo
ENSRNOG00000061795	Rbm4b	100	96.936	ENSCAFG00020015519	RBM4B	100	96.936	Canis_lupus_dingo
ENSRNOG00000061795	Rbm4b	100	87.017	ENSCHIG00000020613	RBM4	100	86.464	Capra_hircus
ENSRNOG00000061795	Rbm4b	100	96.657	ENSCHIG00000008907	RBM4B	100	96.657	Capra_hircus
ENSRNOG00000061795	Rbm4b	65	88.936	ENSTSYG00000009580	RBM4B	96	88.085	Carlito_syrichta
ENSRNOG00000061795	Rbm4b	100	97.493	ENSCAPG00000009570	RBM4B	100	97.493	Cavia_aperea
ENSRNOG00000061795	Rbm4b	100	86.027	ENSCAPG00000016600	RBM4	97	99.275	Cavia_aperea
ENSRNOG00000061795	Rbm4b	100	97.493	ENSCPOG00000013689	RBM4B	100	97.493	Cavia_porcellus
ENSRNOG00000061795	Rbm4b	100	86.027	ENSCPOG00000013194	RBM4	97	99.275	Cavia_porcellus
ENSRNOG00000061795	Rbm4b	56	71.642	ENSCCAG00000023319	-	100	71.642	Cebus_capucinus
ENSRNOG00000061795	Rbm4b	100	96.936	ENSCCAG00000016501	RBM4B	100	96.936	Cebus_capucinus
ENSRNOG00000061795	Rbm4b	100	96.936	ENSCATG00000035353	RBM4B	100	96.936	Cercocebus_atys
ENSRNOG00000061795	Rbm4b	100	85.753	ENSCLAG00000014756	RBM4	97	99.275	Chinchilla_lanigera
ENSRNOG00000061795	Rbm4b	100	97.765	ENSCLAG00000015287	RBM4B	100	97.765	Chinchilla_lanigera
ENSRNOG00000061795	Rbm4b	100	96.936	ENSCSAG00000008361	RBM4B	100	96.936	Chlorocebus_sabaeus
ENSRNOG00000061795	Rbm4b	61	78.414	ENSCHOG00000009753	RBM14-RBM4	100	77.533	Choloepus_hoffmanni
ENSRNOG00000061795	Rbm4b	100	96.657	ENSCHOG00000002892	RBM4B	100	96.657	Choloepus_hoffmanni
ENSRNOG00000061795	Rbm4b	100	74.541	ENSCPBG00000023800	-	100	73.421	Chrysemys_picta_bellii
ENSRNOG00000061795	Rbm4b	100	96.936	ENSCANG00000021868	RBM4B	100	96.936	Colobus_angolensis_palliatus
ENSRNOG00000061795	Rbm4b	100	87.222	ENSCGRG00001016609	-	97	100.000	Cricetulus_griseus_chok1gshd
ENSRNOG00000061795	Rbm4b	100	97.479	ENSCGRG00001024693	Rbm4b	100	97.479	Cricetulus_griseus_chok1gshd
ENSRNOG00000061795	Rbm4b	100	87.222	ENSCGRG00000010183	-	97	100.000	Cricetulus_griseus_crigri
ENSRNOG00000061795	Rbm4b	100	97.479	ENSCGRG00000012112	Rbm4b	100	97.479	Cricetulus_griseus_crigri
ENSRNOG00000061795	Rbm4b	100	96.648	ENSDNOG00000019500	-	100	96.648	Dasypus_novemcinctus
ENSRNOG00000061795	Rbm4b	100	85.753	ENSDNOG00000032390	RBM4	100	85.205	Dasypus_novemcinctus
ENSRNOG00000061795	Rbm4b	100	95.531	ENSDNOG00000045639	-	100	93.855	Dasypus_novemcinctus
ENSRNOG00000061795	Rbm4b	100	96.359	ENSDORG00000029108	Rbm4b	100	96.359	Dipodomys_ordii
ENSRNOG00000061795	Rbm4b	100	85.950	ENSDORG00000004538	-	97	97.826	Dipodomys_ordii
ENSRNOG00000061795	Rbm4b	61	71.364	ENSETEG00000018142	-	100	70.909	Echinops_telfairi
ENSRNOG00000061795	Rbm4b	100	96.936	ENSEASG00005005068	RBM4B	100	96.936	Equus_asinus_asinus
ENSRNOG00000061795	Rbm4b	100	87.258	ENSEASG00005005064	RBM4	100	86.704	Equus_asinus_asinus
ENSRNOG00000061795	Rbm4b	100	96.657	ENSECAG00000022987	RBM4B	100	96.657	Equus_caballus
ENSRNOG00000061795	Rbm4b	100	87.258	ENSECAG00000022940	RBM4	100	86.704	Equus_caballus
ENSRNOG00000061795	Rbm4b	100	90.659	ENSEEUG00000000058	RBM4B	100	89.560	Erinaceus_europaeus
ENSRNOG00000061795	Rbm4b	100	86.301	ENSFCAG00000029651	RBM4	97	98.551	Felis_catus
ENSRNOG00000061795	Rbm4b	100	97.493	ENSFCAG00000007394	RBM4B	100	97.493	Felis_catus
ENSRNOG00000061795	Rbm4b	100	69.730	ENSFALG00000002073	-	100	69.106	Ficedula_albicollis
ENSRNOG00000061795	Rbm4b	100	85.753	ENSFDAG00000005447	RBM4	97	99.275	Fukomys_damarensis
ENSRNOG00000061795	Rbm4b	100	97.207	ENSFDAG00000015530	RBM4B	100	97.207	Fukomys_damarensis
ENSRNOG00000061795	Rbm4b	100	76.800	ENSGALG00000037946	-	100	75.668	Gallus_gallus
ENSRNOG00000061795	Rbm4b	100	74.278	ENSGAGG00000008553	-	100	73.158	Gopherus_agassizii
ENSRNOG00000061795	Rbm4b	100	96.936	ENSGGOG00000011698	RBM4B	100	96.936	Gorilla_gorilla
ENSRNOG00000061795	Rbm4b	100	97.493	ENSHGLG00000016412	-	100	97.493	Heterocephalus_glaber_female
ENSRNOG00000061795	Rbm4b	78	60.606	ENSHGLG00000000117	-	95	69.916	Heterocephalus_glaber_female
ENSRNOG00000061795	Rbm4b	100	82.633	ENSHGLG00000002853	-	100	82.073	Heterocephalus_glaber_female
ENSRNOG00000061795	Rbm4b	100	86.027	ENSHGLG00000009991	RBM4	97	99.275	Heterocephalus_glaber_female
ENSRNOG00000061795	Rbm4b	100	78.947	ENSHGLG00100003854	RBM4	97	99.275	Heterocephalus_glaber_male
ENSRNOG00000061795	Rbm4b	96	83.871	ENSHGLG00100020033	-	100	83.284	Heterocephalus_glaber_male
ENSRNOG00000061795	Rbm4b	100	97.486	ENSHGLG00100003978	-	100	97.486	Heterocephalus_glaber_male
ENSRNOG00000061795	Rbm4b	100	86.027	ENSSTOG00000022811	RBM4	97	98.551	Ictidomys_tridecemlineatus
ENSRNOG00000061795	Rbm4b	100	97.493	ENSSTOG00000011226	RBM4B	100	97.493	Ictidomys_tridecemlineatus
ENSRNOG00000061795	Rbm4b	100	95.798	ENSJJAG00000020870	Rbm4b	100	95.798	Jaculus_jaculus
ENSRNOG00000061795	Rbm4b	100	90.808	ENSLAFG00000002285	RBM4B	100	90.808	Loxodonta_africana
ENSRNOG00000061795	Rbm4b	100	85.237	ENSLAFG00000028147	-	100	84.916	Loxodonta_africana
ENSRNOG00000061795	Rbm4b	100	96.936	ENSMFAG00000033927	RBM4B	97	100.000	Macaca_fascicularis
ENSRNOG00000061795	Rbm4b	100	96.936	ENSMNEG00000043371	RBM4B	100	96.936	Macaca_nemestrina
ENSRNOG00000061795	Rbm4b	100	96.936	ENSMLEG00000028563	RBM4B	97	100.000	Mandrillus_leucophaeus
ENSRNOG00000061795	Rbm4b	100	97.759	ENSMAUG00000017027	Rbm4b	100	97.759	Mesocricetus_auratus
ENSRNOG00000061795	Rbm4b	100	96.379	ENSMICG00000003820	RBM4B	100	96.379	Microcebus_murinus
ENSRNOG00000061795	Rbm4b	100	98.319	ENSMOCG00000001835	Rbm4b	100	98.319	Microtus_ochrogaster
ENSRNOG00000061795	Rbm4b	100	84.511	ENSMODG00000008056	-	100	84.239	Monodelphis_domestica
ENSRNOG00000061795	Rbm4b	100	99.160	MGP_CAROLIEiJ_G0022515	Rbm4b	100	99.160	Mus_caroli
ENSRNOG00000061795	Rbm4b	99	62.431	MGP_CAROLIEiJ_G0022514	-	100	61.878	Mus_caroli
ENSRNOG00000061795	Rbm4b	100	87.535	MGP_CAROLIEiJ_G0022516	-	97	100.000	Mus_caroli
ENSRNOG00000061795	Rbm4b	100	86.981	ENSMUSG00000096370	Gm21992	100	86.427	Mus_musculus
ENSRNOG00000061795	Rbm4b	100	99.440	ENSMUSG00000033760	Rbm4b	100	99.440	Mus_musculus
ENSRNOG00000061795	Rbm4b	100	86.981	ENSMUSG00000094936	Rbm4	100	100.000	Mus_musculus
ENSRNOG00000061795	Rbm4b	100	99.160	MGP_PahariEiJ_G0014012	Rbm4b	100	99.160	Mus_pahari
ENSRNOG00000061795	Rbm4b	100	86.740	MGP_PahariEiJ_G0014013	-	97	100.000	Mus_pahari
ENSRNOG00000061795	Rbm4b	100	86.740	MGP_PahariEiJ_G0014011	-	100	86.188	Mus_pahari
ENSRNOG00000061795	Rbm4b	100	91.429	MGP_SPRETEiJ_G0023429	-	100	91.429	Mus_spretus
ENSRNOG00000061795	Rbm4b	100	69.040	MGP_SPRETEiJ_G0023428	-	94	68.421	Mus_spretus
ENSRNOG00000061795	Rbm4b	100	69.040	MGP_SPRETEiJ_G0023430	-	100	68.421	Mus_spretus
ENSRNOG00000061795	Rbm4b	100	96.936	ENSMPUG00000003450	RBM4B	100	96.936	Mustela_putorius_furo
ENSRNOG00000061795	Rbm4b	100	86.027	ENSMPUG00000003443	RBM4	100	85.479	Mustela_putorius_furo
ENSRNOG00000061795	Rbm4b	99	84.530	ENSMLUG00000004076	RBM4	95	83.978	Myotis_lucifugus
ENSRNOG00000061795	Rbm4b	100	94.398	ENSMLUG00000001290	RBM4B	100	94.398	Myotis_lucifugus
ENSRNOG00000061795	Rbm4b	100	97.479	ENSNGAG00000016292	Rbm4b	100	97.479	Nannospalax_galili
ENSRNOG00000061795	Rbm4b	100	86.849	ENSNLEG00000035021	RBM4	97	98.551	Nomascus_leucogenys
ENSRNOG00000061795	Rbm4b	100	96.379	ENSNLEG00000006213	RBM4B	100	96.379	Nomascus_leucogenys
ENSRNOG00000061795	Rbm4b	100	87.052	ENSMEUG00000001445	-	100	86.777	Notamacropus_eugenii
ENSRNOG00000061795	Rbm4b	61	79.736	ENSMEUG00000005739	-	100	78.855	Notamacropus_eugenii
ENSRNOG00000061795	Rbm4b	100	86.575	ENSOPRG00000009149	RBM4	100	86.027	Ochotona_princeps
ENSRNOG00000061795	Rbm4b	100	96.657	ENSOPRG00000009158	RBM4B	100	96.657	Ochotona_princeps
ENSRNOG00000061795	Rbm4b	100	96.936	ENSODEG00000017696	-	100	96.936	Octodon_degus
ENSRNOG00000061795	Rbm4b	100	71.866	ENSODEG00000001866	-	100	71.944	Octodon_degus
ENSRNOG00000061795	Rbm4b	100	86.872	ENSOANG00000011036	-	100	86.313	Ornithorhynchus_anatinus
ENSRNOG00000061795	Rbm4b	100	79.552	ENSOANG00000003143	-	84	78.492	Ornithorhynchus_anatinus
ENSRNOG00000061795	Rbm4b	100	97.493	ENSOCUG00000006695	LARK	100	97.493	Oryctolagus_cuniculus
ENSRNOG00000061795	Rbm4b	100	86.027	ENSOCUG00000004731	RBM4	100	85.479	Oryctolagus_cuniculus
ENSRNOG00000061795	Rbm4b	100	86.612	ENSOGAG00000015647	RBM4	100	84.932	Otolemur_garnettii
ENSRNOG00000061795	Rbm4b	100	97.214	ENSOGAG00000015648	RBM4B	100	97.214	Otolemur_garnettii
ENSRNOG00000061795	Rbm4b	100	93.664	ENSOARG00000007759	RBM4B	100	94.490	Ovis_aries
ENSRNOG00000061795	Rbm4b	100	85.912	ENSOARG00000007700	RBM4	100	85.359	Ovis_aries
ENSRNOG00000061795	Rbm4b	100	96.936	ENSPPAG00000015125	RBM4B	100	96.936	Pan_paniscus
ENSRNOG00000061795	Rbm4b	100	86.301	ENSPPRG00000003533	RBM4	97	98.551	Panthera_pardus
ENSRNOG00000061795	Rbm4b	100	97.214	ENSPPRG00000003388	RBM4B	100	97.214	Panthera_pardus
ENSRNOG00000061795	Rbm4b	100	79.834	ENSPTIG00000016180	RBM4	97	99.275	Panthera_tigris_altaica
ENSRNOG00000061795	Rbm4b	100	97.214	ENSPTIG00000015426	RBM4B	100	97.214	Panthera_tigris_altaica
ENSRNOG00000061795	Rbm4b	100	96.936	ENSPTRG00000003935	RBM4B	100	96.936	Pan_troglodytes
ENSRNOG00000061795	Rbm4b	100	96.936	ENSPANG00000020672	RBM4B	100	96.936	Papio_anubis
ENSRNOG00000061795	Rbm4b	77	80.969	ENSPSIG00000003477	-	93	79.861	Pelodiscus_sinensis
ENSRNOG00000061795	Rbm4b	100	76.075	ENSPSIG00000003430	-	100	74.933	Pelodiscus_sinensis
ENSRNOG00000061795	Rbm4b	100	98.883	ENSPEMG00000009144	Rbm4b	100	98.883	Peromyscus_maniculatus_bairdii
ENSRNOG00000061795	Rbm4b	100	96.936	ENSPPYG00000003010	RBM4B	100	96.936	Pongo_abelii
ENSRNOG00000061795	Rbm4b	100	85.753	ENSPPYG00000003012	RBM4	100	84.341	Pongo_abelii
ENSRNOG00000061795	Rbm4b	100	86.575	ENSPCAG00000003393	-	100	86.027	Procavia_capensis
ENSRNOG00000061795	Rbm4b	100	96.100	ENSPCOG00000027885	RBM4B	97	99.281	Propithecus_coquereli
ENSRNOG00000061795	Rbm4b	100	96.657	ENSPVAG00000010487	RBM4B	100	96.657	Pteropus_vampyrus
ENSRNOG00000061795	Rbm4b	100	86.027	ENSPVAG00000010486	RBM4	100	85.479	Pteropus_vampyrus
ENSRNOG00000061795	Rbm4b	100	96.936	ENSRBIG00000019394	RBM4B	100	96.936	Rhinopithecus_bieti
ENSRNOG00000061795	Rbm4b	100	96.936	ENSRROG00000032850	RBM4B	100	96.936	Rhinopithecus_roxellana
ENSRNOG00000061795	Rbm4b	100	96.657	ENSSBOG00000034474	RBM4B	100	96.657	Saimiri_boliviensis_boliviensis
ENSRNOG00000061795	Rbm4b	100	87.989	ENSSHAG00000008386	-	100	87.709	Sarcophilus_harrisii
ENSRNOG00000061795	Rbm4b	100	96.089	ENSSARG00000010710	RBM4B	100	96.089	Sorex_araneus
ENSRNOG00000061795	Rbm4b	100	86.301	ENSSSCG00000032437	RBM4	100	85.753	Sus_scrofa
ENSRNOG00000061795	Rbm4b	78	79.863	ENSTGUG00000016779	-	92	79.861	Taeniopygia_guttata
ENSRNOG00000061795	Rbm4b	64	94.091	ENSTBEG00000003727	-	68	94.393	Tupaia_belangeri
ENSRNOG00000061795	Rbm4b	100	96.639	ENSTBEG00000003748	RBM4B	100	96.639	Tupaia_belangeri
ENSRNOG00000061795	Rbm4b	100	85.753	ENSTTRG00000011164	RBM4	100	85.205	Tursiops_truncatus
ENSRNOG00000061795	Rbm4b	100	96.936	ENSTTRG00000011166	RBM4B	100	96.936	Tursiops_truncatus
ENSRNOG00000061795	Rbm4b	100	96.936	ENSUAMG00000004745	RBM4B	100	96.936	Ursus_americanus
ENSRNOG00000061795	Rbm4b	100	86.301	ENSUAMG00000014882	RBM4	97	98.551	Ursus_americanus
ENSRNOG00000061795	Rbm4b	65	95.319	ENSUMAG00000011738	-	97	99.275	Ursus_maritimus
ENSRNOG00000061795	Rbm4b	100	86.027	ENSVPAG00000001949	RBM4	100	85.479	Vicugna_pacos
ENSRNOG00000061795	Rbm4b	100	96.657	ENSVPAG00000001950	RBM4B	100	96.657	Vicugna_pacos
ENSRNOG00000061795	Rbm4b	100	96.936	ENSVVUG00000010619	RBM4B	100	96.936	Vulpes_vulpes
ENSRNOG00000061795	Rbm4b	100	85.753	ENSVVUG00000010622	RBM4	100	85.205	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005730	nucleolus	-	IEA	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006417	regulation of translation	-	ISO	Process
GO:0006417	regulation of translation	-	ISS	Process
GO:0007623	circadian rhythm	-	ISO	Process
GO:0007623	circadian rhythm	-	ISS	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0010628	positive regulation of gene expression	-	IEA	Process
GO:0010628	positive regulation of gene expression	-	ISO	Process
GO:0016607	nuclear speck	21873635.	IBA	Component
GO:0032922	circadian regulation of gene expression	-	ISO	Process
GO:0032922	circadian regulation of gene expression	-	ISS	Process
GO:0032991	protein-containing complex	-	IEA	Component
GO:0032991	protein-containing complex	-	ISO	Component
GO:0043153	entrainment of circadian clock by photoperiod	-	ISO	Process
GO:0043153	entrainment of circadian clock by photoperiod	-	ISS	Process
GO:0045292	mRNA cis splicing, via spliceosome	21873635.	IBA	Process