EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSRROG00000012779 (Gene tree)
Gene ID: 104660346
Gene Symbol: PRDM4
Alias: PFM1
Full Name: PR/SET domain 4
Gene Type: protein_coding
Species: Rhinopithecus_roxellana
Status: putative
Strand: Plus strand
Length: 29427 bases
Position: chrKN294199.1:1567489-1596915
Accession: 104660346
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRROP00000003226	zf-C2H2	PF00096.26	7.1e-19	1	2
ENSRROP00000003226	zf-C2H2	PF00096.26	7.1e-19	2	2
ENSRROP00000003226	zf-met	PF12874.7	5.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRROT00000014268	PRDM4-201	4222	XM_010360662	ENSRROP00000003226	801 (aa)	XP_010358964	A0A2K6NG29
ENSRROT00000014274	PRDM4-202	951	-	ENSRROP00000003228	316 (aa)	-	A0A2K6NG24

Gene Model

Click here to download ENSRROG00000012779's gene model file

Pathways

Pathway ID	Pathway Name	Source
rro04722	Neurotrophin signaling pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRROG00000012779's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRROG00000012779	PRDM4	52	36.054	ENSRROG00000034334	PRDM10	52	36.054

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRROG00000012779	PRDM4	100	99.625	ENSG00000110851	PRDM4	100	100.000	Homo_sapiens
ENSRROG00000012779	PRDM4	99	97.247	ENSAMEG00000016174	PRDM4	99	97.247	Ailuropoda_melanoleuca
ENSRROG00000012779	PRDM4	99	87.469	ENSAPLG00000009846	PRDM4	99	86.842	Anas_platyrhynchos
ENSRROG00000012779	PRDM4	100	99.001	ENSANAG00000024800	PRDM4	100	99.001	Aotus_nancymaae
ENSRROG00000012779	PRDM4	100	97.129	ENSBTAG00000012999	PRDM4	100	97.129	Bos_taurus
ENSRROG00000012779	PRDM4	100	98.502	ENSCJAG00000015261	PRDM4	100	98.502	Callithrix_jacchus
ENSRROG00000012779	PRDM4	100	97.253	ENSCAFG00000001788	PRDM4	100	97.253	Canis_familiaris
ENSRROG00000012779	PRDM4	100	97.253	ENSCAFG00020004916	PRDM4	100	97.253	Canis_lupus_dingo
ENSRROG00000012779	PRDM4	100	96.754	ENSCHIG00000019409	PRDM4	100	96.754	Capra_hircus
ENSRROG00000012779	PRDM4	100	97.503	ENSTSYG00000009248	PRDM4	100	97.503	Carlito_syrichta
ENSRROG00000012779	PRDM4	99	90.613	ENSCAPG00000013937	PRDM4	99	90.488	Cavia_aperea
ENSRROG00000012779	PRDM4	99	90.062	ENSCPOG00000022385	PRDM4	100	89.938	Cavia_porcellus
ENSRROG00000012779	PRDM4	100	99.126	ENSCCAG00000036033	PRDM4	100	99.126	Cebus_capucinus
ENSRROG00000012779	PRDM4	100	99.501	ENSCATG00000044797	PRDM4	100	99.501	Cercocebus_atys
ENSRROG00000012779	PRDM4	99	92.910	ENSCLAG00000007545	PRDM4	100	93.284	Chinchilla_lanigera
ENSRROG00000012779	PRDM4	100	99.750	ENSCSAG00000002896	PRDM4	100	99.750	Chlorocebus_sabaeus
ENSRROG00000012779	PRDM4	71	98.182	ENSCHOG00000001744	PRDM4	86	98.182	Choloepus_hoffmanni
ENSRROG00000012779	PRDM4	99	88.457	ENSCPBG00000023187	PRDM4	100	88.080	Chrysemys_picta_bellii
ENSRROG00000012779	PRDM4	100	99.875	ENSCANG00000021804	PRDM4	100	99.875	Colobus_angolensis_palliatus
ENSRROG00000012779	PRDM4	99	93.035	ENSCGRG00001015102	-	100	92.662	Cricetulus_griseus_chok1gshd
ENSRROG00000012779	PRDM4	96	93.032	ENSCGRG00000004044	-	100	92.645	Cricetulus_griseus_crigri
ENSRROG00000012779	PRDM4	100	96.380	ENSDNOG00000032478	PRDM4	100	96.380	Dasypus_novemcinctus
ENSRROG00000012779	PRDM4	99	82.058	ENSDORG00000015081	-	100	81.807	Dipodomys_ordii
ENSRROG00000012779	PRDM4	93	46.078	ENSEBUG00000003775	prdm4	99	46.047	Eptatretus_burgeri
ENSRROG00000012779	PRDM4	100	97.253	ENSECAG00000015423	PRDM4	100	97.253	Equus_caballus
ENSRROG00000012779	PRDM4	94	93.209	ENSEEUG00000006569	PRDM4	99	92.810	Erinaceus_europaeus
ENSRROG00000012779	PRDM4	99	60.510	ENSELUG00000015265	prdm4	99	60.753	Esox_lucius
ENSRROG00000012779	PRDM4	100	97.753	ENSFCAG00000022478	PRDM4	100	97.753	Felis_catus
ENSRROG00000012779	PRDM4	99	87.829	ENSFALG00000013342	PRDM4	100	87.327	Ficedula_albicollis
ENSRROG00000012779	PRDM4	100	87.049	ENSGALG00000012619	PRDM4	100	86.426	Gallus_gallus
ENSRROG00000012779	PRDM4	99	88.095	ENSGAGG00000002763	PRDM4	95	87.719	Gopherus_agassizii
ENSRROG00000012779	PRDM4	99	99.750	ENSGGOG00000001244	PRDM4	99	99.750	Gorilla_gorilla
ENSRROG00000012779	PRDM4	99	93.977	ENSHGLG00000004590	PRDM4	98	93.726	Heterocephalus_glaber_female
ENSRROG00000012779	PRDM4	99	92.919	ENSHGLG00100007464	PRDM4	100	92.671	Heterocephalus_glaber_male
ENSRROG00000012779	PRDM4	95	61.528	ENSIPUG00000024162	prdm4	93	61.880	Ictalurus_punctatus
ENSRROG00000012779	PRDM4	100	96.629	ENSSTOG00000016168	PRDM4	100	96.629	Ictidomys_tridecemlineatus
ENSRROG00000012779	PRDM4	82	93.548	ENSJJAG00000022448	-	95	93.548	Jaculus_jaculus
ENSRROG00000012779	PRDM4	99	72.772	ENSLACG00000007452	PRDM4	99	73.020	Latimeria_chalumnae
ENSRROG00000012779	PRDM4	78	42.216	ENSLOCG00000017092	prdm4	100	52.814	Lepisosteus_oculatus
ENSRROG00000012779	PRDM4	98	96.574	ENSLAFG00000001483	PRDM4	100	96.574	Loxodonta_africana
ENSRROG00000012779	PRDM4	100	99.875	ENSMFAG00000041862	PRDM4	100	99.875	Macaca_fascicularis
ENSRROG00000012779	PRDM4	100	99.875	ENSMMUG00000015550	PRDM4	100	99.875	Macaca_mulatta
ENSRROG00000012779	PRDM4	100	99.625	ENSMNEG00000032319	PRDM4	100	99.625	Macaca_nemestrina
ENSRROG00000012779	PRDM4	100	99.750	ENSMLEG00000039607	PRDM4	100	99.750	Mandrillus_leucophaeus
ENSRROG00000012779	PRDM4	99	79.625	ENSMGAG00000012815	PRDM4	100	79.000	Meleagris_gallopavo
ENSRROG00000012779	PRDM4	100	96.504	ENSMICG00000007807	PRDM4	100	96.504	Microcebus_murinus
ENSRROG00000012779	PRDM4	99	94.110	ENSMOCG00000000753	Prdm4	99	93.860	Microtus_ochrogaster
ENSRROG00000012779	PRDM4	99	94.479	ENSMUSG00000035529	Prdm4	100	94.228	Mus_musculus
ENSRROG00000012779	PRDM4	99	93.852	MGP_PahariEiJ_G0031398	Prdm4	100	93.901	Mus_pahari
ENSRROG00000012779	PRDM4	99	95.107	MGP_SPRETEiJ_G0016505	Prdm4	100	95.172	Mus_spretus
ENSRROG00000012779	PRDM4	99	91.147	ENSMPUG00000012238	PRDM4	99	91.147	Mustela_putorius_furo
ENSRROG00000012779	PRDM4	99	96.992	ENSMLUG00000000767	PRDM4	99	96.992	Myotis_lucifugus
ENSRROG00000012779	PRDM4	99	95.609	ENSNGAG00000018627	Prdm4	100	95.609	Nannospalax_galili
ENSRROG00000012779	PRDM4	100	99.501	ENSNLEG00000006748	PRDM4	100	99.501	Nomascus_leucogenys
ENSRROG00000012779	PRDM4	89	89.202	ENSMEUG00000004495	PRDM4	89	89.202	Notamacropus_eugenii
ENSRROG00000012779	PRDM4	88	95.238	ENSOPRG00000010192	PRDM4	89	95.238	Ochotona_princeps
ENSRROG00000012779	PRDM4	99	90.625	ENSODEG00000014750	PRDM4	99	90.500	Octodon_degus
ENSRROG00000012779	PRDM4	100	90.886	ENSOANG00000005526	PRDM4	100	90.886	Ornithorhynchus_anatinus
ENSRROG00000012779	PRDM4	93	96.567	ENSOCUG00000012859	PRDM4	96	96.567	Oryctolagus_cuniculus
ENSRROG00000012779	PRDM4	99	97.742	ENSOGAG00000011945	PRDM4	100	97.742	Otolemur_garnettii
ENSRROG00000012779	PRDM4	100	96.504	ENSOARG00000017955	PRDM4	100	96.504	Ovis_aries
ENSRROG00000012779	PRDM4	100	99.625	ENSPPAG00000038438	PRDM4	100	99.625	Pan_paniscus
ENSRROG00000012779	PRDM4	100	97.753	ENSPPRG00000004144	PRDM4	100	97.753	Panthera_pardus
ENSRROG00000012779	PRDM4	100	97.753	ENSPTIG00000005847	PRDM4	100	97.753	Panthera_tigris_altaica
ENSRROG00000012779	PRDM4	100	99.625	ENSPTRG00000005400	PRDM4	100	99.625	Pan_troglodytes
ENSRROG00000012779	PRDM4	100	99.875	ENSPANG00000022084	PRDM4	100	99.875	Papio_anubis
ENSRROG00000012779	PRDM4	99	59.691	ENSPKIG00000000875	prdm4	99	60.404	Paramormyrops_kingsleyae
ENSRROG00000012779	PRDM4	91	81.559	ENSPSIG00000012066	PRDM4	100	81.559	Pelodiscus_sinensis
ENSRROG00000012779	PRDM4	99	95.483	ENSPEMG00000014598	Prdm4	100	95.483	Peromyscus_maniculatus_bairdii
ENSRROG00000012779	PRDM4	100	89.055	ENSPCIG00000009471	PRDM4	100	89.055	Phascolarctos_cinereus
ENSRROG00000012779	PRDM4	100	99.501	ENSPPYG00000004913	PRDM4	100	99.501	Pongo_abelii
ENSRROG00000012779	PRDM4	83	95.833	ENSPCAG00000009987	PRDM4	83	95.833	Procavia_capensis
ENSRROG00000012779	PRDM4	100	96.754	ENSPCOG00000021060	PRDM4	100	96.754	Propithecus_coquereli
ENSRROG00000012779	PRDM4	100	96.758	ENSPVAG00000001596	PRDM4	100	96.758	Pteropus_vampyrus
ENSRROG00000012779	PRDM4	99	93.860	ENSRNOG00000004962	Prdm4	100	93.609	Rattus_norvegicus
ENSRROG00000012779	PRDM4	100	99.875	ENSRBIG00000035488	PRDM4	100	99.875	Rhinopithecus_bieti
ENSRROG00000012779	PRDM4	100	99.001	ENSSBOG00000000403	PRDM4	100	99.001	Saimiri_boliviensis_boliviensis
ENSRROG00000012779	PRDM4	99	63.670	ENSSFOG00015023358	prdm4	99	63.670	Scleropages_formosus
ENSRROG00000012779	PRDM4	100	97.253	ENSSSCG00000000160	PRDM4	100	97.253	Sus_scrofa
ENSRROG00000012779	PRDM4	99	87.719	ENSTGUG00000010962	-	99	87.218	Taeniopygia_guttata
ENSRROG00000012779	PRDM4	73	89.932	ENSTBEG00000001732	PRDM4	84	89.932	Tupaia_belangeri
ENSRROG00000012779	PRDM4	100	96.629	ENSTTRG00000011056	PRDM4	100	96.629	Tursiops_truncatus
ENSRROG00000012779	PRDM4	100	97.628	ENSUAMG00000022796	PRDM4	100	97.628	Ursus_americanus
ENSRROG00000012779	PRDM4	100	97.628	ENSUMAG00000017231	PRDM4	100	97.628	Ursus_maritimus
ENSRROG00000012779	PRDM4	99	97.491	ENSVPAG00000002215	PRDM4	100	97.491	Vicugna_pacos
ENSRROG00000012779	PRDM4	100	97.253	ENSVVUG00000023397	PRDM4	100	97.253	Vulpes_vulpes