EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSRROG00000020367 (Gene tree)
Gene ID: 104657746
Gene Symbol: PABPC4L
Alias: -
Full Name: poly(A) binding protein cytoplasmic 4 like
Gene Type: protein_coding
Species: Rhinopithecus_roxellana
Status: putative
Strand: Minus strand
Length: 1113 bases
Position: chrKN300020.1:183246-184358
Accession: 31955
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRROP00000004907	RRM_5	PF13893.6	4.8e-14	1	3
ENSRROP00000004907	RRM_5	PF13893.6	4.8e-14	2	3
ENSRROP00000004907	RRM_5	PF13893.6	4.8e-14	3	3
ENSRROP00000004907	RRM_1	PF00076.22	6.8e-85	1	4
ENSRROP00000004907	RRM_1	PF00076.22	6.8e-85	2	4
ENSRROP00000004907	RRM_1	PF00076.22	6.8e-85	3	4
ENSRROP00000004907	RRM_1	PF00076.22	6.8e-85	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRROT00000022547	PABPC4L-201	1113	-	ENSRROP00000004907	370 (aa)	-	A0A2K6NKV6

Gene Model

Click here to download ENSRROG00000020367's gene model file

Pathways

Pathway ID	Pathway Name	Source
rro03013	RNA transport	KEGG
rro03015	mRNA surveillance pathway	KEGG
rro03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRROG00000020367's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRROG00000020367	PABPC4L	99	53.005	ENSRROG00000028723	-	70	53.005
ENSRROG00000020367	PABPC4L	96	63.265	ENSRROG00000017404	-	98	63.265
ENSRROG00000020367	PABPC4L	66	32.317	ENSRROG00000029128	TRNAU1AP	86	36.111
ENSRROG00000020367	PABPC4L	99	66.575	ENSRROG00000042796	-	69	66.860
ENSRROG00000020367	PABPC4L	97	42.077	ENSRROG00000029366	SF3B4	63	42.077
ENSRROG00000020367	PABPC4L	99	65.574	ENSRROG00000032349	-	59	65.574
ENSRROG00000020367	PABPC4L	82	42.105	ENSRROG00000034767	RBM3	81	46.774
ENSRROG00000020367	PABPC4L	98	50.456	ENSRROG00000044781	-	64	50.456
ENSRROG00000020367	PABPC4L	98	62.259	ENSRROG00000044498	PABPC1L	62	62.259
ENSRROG00000020367	PABPC4L	96	30.286	ENSRROG00000041782	ELAVL2	80	30.286
ENSRROG00000020367	PABPC4L	68	32.456	ENSRROG00000043377	TIAL1	91	32.456
ENSRROG00000020367	PABPC4L	98	67.769	ENSRROG00000036871	PABPC3	60	67.769
ENSRROG00000020367	PABPC4L	99	72.554	ENSRROG00000033355	PABPC4	61	72.554
ENSRROG00000020367	PABPC4L	86	31.707	ENSRROG00000037769	ELAVL1	82	31.707
ENSRROG00000020367	PABPC4L	98	59.270	ENSRROG00000036708	PABPC5	96	59.341
ENSRROG00000020367	PABPC4L	90	30.939	ENSRROG00000028794	-	50	30.108
ENSRROG00000020367	PABPC4L	91	46.009	ENSRROG00000029758	-	68	46.009

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRROG00000020367	PABPC4L	100	95.676	ENSG00000254535	PABPC4L	100	95.676	Homo_sapiens
ENSRROG00000020367	PABPC4L	100	93.514	ENSANAG00000017199	PABPC4L	87	93.514	Aotus_nancymaae
ENSRROG00000020367	PABPC4L	99	86.450	ENSBTAG00000046902	PABPC4L	99	86.450	Bos_taurus
ENSRROG00000020367	PABPC4L	100	93.784	ENSCJAG00000045332	PABPC4L	86	93.784	Callithrix_jacchus
ENSRROG00000020367	PABPC4L	99	72.011	ENSCAFG00020019182	-	54	72.011	Canis_lupus_dingo
ENSRROG00000020367	PABPC4L	99	86.450	ENSCHIG00000007231	PABPC4L	99	86.450	Capra_hircus
ENSRROG00000020367	PABPC4L	98	78.144	ENSCAPG00000000555	PABPC4L	100	78.144	Cavia_aperea
ENSRROG00000020367	PABPC4L	99	76.423	ENSCPOG00000033167	PABPC4L	100	76.423	Cavia_porcellus
ENSRROG00000020367	PABPC4L	100	93.784	ENSCCAG00000031681	PABPC4L	86	93.784	Cebus_capucinus
ENSRROG00000020367	PABPC4L	100	81.351	ENSCLAG00000017628	PABPC4L	100	81.351	Chinchilla_lanigera
ENSRROG00000020367	PABPC4L	100	98.108	ENSCANG00000037677	PABPC4L	100	98.108	Colobus_angolensis_palliatus
ENSRROG00000020367	PABPC4L	100	80.000	ENSCGRG00001002070	Pabpc4l	100	80.000	Cricetulus_griseus_chok1gshd
ENSRROG00000020367	PABPC4L	100	80.000	ENSCGRG00000020086	Pabpc4l	100	80.000	Cricetulus_griseus_crigri
ENSRROG00000020367	PABPC4L	100	88.649	ENSDNOG00000031077	PABPC4L	95	88.649	Dasypus_novemcinctus
ENSRROG00000020367	PABPC4L	99	86.721	ENSEASG00005007883	PABPC4L	99	86.721	Equus_asinus_asinus
ENSRROG00000020367	PABPC4L	99	86.992	ENSECAG00000031416	PABPC4L	99	86.992	Equus_caballus
ENSRROG00000020367	PABPC4L	99	86.721	ENSFCAG00000028270	PABPC4L	99	86.721	Felis_catus
ENSRROG00000020367	PABPC4L	99	82.114	ENSFDAG00000019606	PABPC4L	99	82.114	Fukomys_damarensis
ENSRROG00000020367	PABPC4L	100	95.676	ENSGGOG00000024991	PABPC4L	100	95.676	Gorilla_gorilla
ENSRROG00000020367	PABPC4L	99	81.843	ENSHGLG00000020104	PABPC4L	99	81.843	Heterocephalus_glaber_female
ENSRROG00000020367	PABPC4L	99	81.843	ENSHGLG00100020648	PABPC4L	99	81.843	Heterocephalus_glaber_male
ENSRROG00000020367	PABPC4L	100	84.367	ENSSTOG00000019472	PABPC4L	99	84.367	Ictidomys_tridecemlineatus
ENSRROG00000020367	PABPC4L	99	80.759	ENSJJAG00000004090	Pabpc4l	99	80.759	Jaculus_jaculus
ENSRROG00000020367	PABPC4L	100	80.270	ENSMAUG00000016313	Pabpc4l	100	80.270	Mesocricetus_auratus
ENSRROG00000020367	PABPC4L	100	91.351	ENSMICG00000029683	PABPC4L	100	91.351	Microcebus_murinus
ENSRROG00000020367	PABPC4L	100	80.811	ENSMOCG00000007551	Pabpc4l	100	80.811	Microtus_ochrogaster
ENSRROG00000020367	PABPC4L	99	80.233	MGP_CAROLIEiJ_G0024968	Pabpc4l	100	80.233	Mus_caroli
ENSRROG00000020367	PABPC4L	99	80.814	ENSMUSG00000090919	Pabpc4l	100	80.814	Mus_musculus
ENSRROG00000020367	PABPC4L	99	81.395	MGP_PahariEiJ_G0026409	Pabpc4l	100	81.395	Mus_pahari
ENSRROG00000020367	PABPC4L	99	80.233	MGP_SPRETEiJ_G0025903	Pabpc4l	100	80.233	Mus_spretus
ENSRROG00000020367	PABPC4L	99	78.591	ENSMLUG00000008254	PABPC4L	99	78.591	Myotis_lucifugus
ENSRROG00000020367	PABPC4L	100	84.865	ENSNGAG00000001502	Pabpc4l	100	84.865	Nannospalax_galili
ENSRROG00000020367	PABPC4L	100	95.676	ENSNLEG00000019300	PABPC4L	100	95.676	Nomascus_leucogenys
ENSRROG00000020367	PABPC4L	100	84.054	ENSOGAG00000026166	PABPC4L	100	84.054	Otolemur_garnettii
ENSRROG00000020367	PABPC4L	99	97.523	ENSPPAG00000043745	PABPC4L	93	97.523	Pan_paniscus
ENSRROG00000020367	PABPC4L	99	86.179	ENSPPRG00000018628	PABPC4L	99	86.179	Panthera_pardus
ENSRROG00000020367	PABPC4L	99	86.721	ENSPTIG00000010106	PABPC4L	99	86.721	Panthera_tigris_altaica
ENSRROG00000020367	PABPC4L	99	97.523	ENSPTRG00000045513	-	78	97.523	Pan_troglodytes
ENSRROG00000020367	PABPC4L	100	79.730	ENSPEMG00000012565	Pabpc4l	100	79.730	Peromyscus_maniculatus_bairdii
ENSRROG00000020367	PABPC4L	100	91.351	ENSPCOG00000025578	PABPC4L	100	91.351	Propithecus_coquereli
ENSRROG00000020367	PABPC4L	100	78.649	ENSRNOG00000029749	Pabpc4l	100	78.649	Rattus_norvegicus
ENSRROG00000020367	PABPC4L	100	99.730	ENSRBIG00000030229	PABPC4L	100	99.730	Rhinopithecus_bieti
ENSRROG00000020367	PABPC4L	100	92.432	ENSSBOG00000016382	PABPC4L	100	92.432	Saimiri_boliviensis_boliviensis
ENSRROG00000020367	PABPC4L	99	80.759	ENSSSCG00000009067	PABPC4L	99	80.759	Sus_scrofa
ENSRROG00000020367	PABPC4L	99	86.450	ENSUAMG00000001289	PABPC4L	99	86.450	Ursus_americanus
ENSRROG00000020367	PABPC4L	99	86.450	ENSUMAG00000014887	PABPC4L	99	86.450	Ursus_maritimus
ENSRROG00000020367	PABPC4L	88	76.074	ENSVVUG00000011060	-	74	76.074	Vulpes_vulpes