EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSRROG00000028557 (Gene tree)
Gene ID: 104682554
Gene Symbol: -
Alias: -
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 3D
Gene Type: protein_coding
Species: Rhinopithecus_roxellana
Status: putative
Strand: Plus strand
Length: 72090 bases
Position: chrKN299213.1:4477439-4549528
Accession: 104682554
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRROP00000008207	APOBEC_N	PF08210.11	3e-106	1	2
ENSRROP00000008207	APOBEC_N	PF08210.11	3e-106	2	2
ENSRROP00000008209	APOBEC_N	PF08210.11	4.8e-58	1	1
ENSRROP00000008207	APOBEC_C	PF05240.14	8e-64	1	2
ENSRROP00000008207	APOBEC_C	PF05240.14	8e-64	2	2
ENSRROP00000008209	APOBEC_C	PF05240.14	4.4e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRROT00000032273	-	585	-	ENSRROP00000008209	194 (aa)	-	A0A2K6NVA7
ENSRROT00000032270	-	1626	XM_010389269	ENSRROP00000008207	374 (aa)	XP_010387571	A0A2K6NVA4

Gene Model

Click here to download ENSRROG00000028557's gene model file

Pathways

Pathway ID	Pathway Name	Source
rro05170	Human immunodeficiency virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRROG00000028557's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRROG00000028557	-	100	79.444	ENSRROG00000029996	-	100	79.444
ENSRROG00000028557	-	97	34.653	ENSRROG00000024699	APOBEC3H	97	34.694
ENSRROG00000028557	-	53	40.741	ENSRROG00000033576	APOBEC1	54	40.741
ENSRROG00000028557	-	94	41.954	ENSRROG00000032866	AICDA	96	40.441
ENSRROG00000028557	-	100	62.304	ENSRROG00000028773	APOBEC3G	99	62.304
ENSRROG00000028557	-	98	32.178	ENSRROG00000030082	APOBEC2	87	33.166
ENSRROG00000028557	-	100	80.645	ENSRROG00000029045	APOBEC3C	100	80.645

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRROG00000028557	-	100	77.717	ENSG00000243811	APOBEC3D	100	77.717	Homo_sapiens
ENSRROG00000028557	-	100	80.978	ENSG00000128394	APOBEC3F	100	80.978	Homo_sapiens
ENSRROG00000028557	-	100	75.806	ENSG00000244509	APOBEC3C	100	75.806	Homo_sapiens
ENSRROG00000028557	-	100	70.856	ENSANAG00000030088	-	99	70.856	Aotus_nancymaae
ENSRROG00000028557	-	70	69.697	ENSCJAG00000015317	-	100	69.697	Callithrix_jacchus
ENSRROG00000028557	-	94	50.532	ENSCAFG00020002615	-	99	50.265	Canis_lupus_dingo
ENSRROG00000028557	-	97	57.377	ENSTSYG00000028254	-	99	57.377	Carlito_syrichta
ENSRROG00000028557	-	100	55.000	ENSTSYG00000034260	-	99	54.404	Carlito_syrichta
ENSRROG00000028557	-	98	50.820	ENSTSYG00000030036	-	99	50.820	Carlito_syrichta
ENSRROG00000028557	-	99	68.421	ENSCCAG00000030932	-	86	68.421	Cebus_capucinus
ENSRROG00000028557	-	100	84.868	ENSCATG00000033502	-	94	84.868	Cercocebus_atys
ENSRROG00000028557	-	100	72.043	ENSCATG00000043226	APOBEC3C	100	72.043	Cercocebus_atys
ENSRROG00000028557	-	100	80.749	ENSCSAG00000006382	APOBEC3F	100	80.749	Chlorocebus_sabaeus
ENSRROG00000028557	-	100	75.806	ENSCSAG00000006402	APOBEC3C	100	75.806	Chlorocebus_sabaeus
ENSRROG00000028557	-	100	77.273	ENSCANG00000032904	-	100	77.273	Colobus_angolensis_palliatus
ENSRROG00000028557	-	100	75.806	ENSCANG00000039177	APOBEC3C	100	75.806	Colobus_angolensis_palliatus
ENSRROG00000028557	-	100	75.543	ENSCANG00000033269	-	99	77.174	Colobus_angolensis_palliatus
ENSRROG00000028557	-	100	80.481	ENSCANG00000031957	-	100	81.421	Colobus_angolensis_palliatus
ENSRROG00000028557	-	94	40.860	ENSDNOG00000044642	-	99	40.860	Dasypus_novemcinctus
ENSRROG00000028557	-	100	45.918	ENSEASG00005018641	-	100	45.918	Equus_asinus_asinus
ENSRROG00000028557	-	100	47.283	ENSECAG00000006071	-	100	47.253	Equus_caballus
ENSRROG00000028557	-	100	75.269	ENSGGOG00000036587	-	100	75.269	Gorilla_gorilla
ENSRROG00000028557	-	100	80.435	ENSGGOG00000038678	APOBEC3F	100	80.435	Gorilla_gorilla
ENSRROG00000028557	-	99	43.817	ENSHGLG00000017315	-	94	43.817	Heterocephalus_glaber_female
ENSRROG00000028557	-	99	43.817	ENSHGLG00100003105	-	92	46.739	Heterocephalus_glaber_male
ENSRROG00000028557	-	100	76.087	ENSMFAG00000004037	APOBEC3F	100	76.087	Macaca_fascicularis
ENSRROG00000028557	-	100	84.225	ENSMFAG00000002331	-	100	84.225	Macaca_fascicularis
ENSRROG00000028557	-	100	73.118	ENSMFAG00000016792	APOBEC3C	100	73.118	Macaca_fascicularis
ENSRROG00000028557	-	98	73.913	ENSMMUG00000004018	APOBEC3C	100	70.619	Macaca_mulatta
ENSRROG00000028557	-	100	83.246	ENSMMUG00000004017	APOBEC3F	100	83.246	Macaca_mulatta
ENSRROG00000028557	-	100	83.246	ENSMNEG00000043316	APOBEC3D	100	83.246	Macaca_nemestrina
ENSRROG00000028557	-	100	73.656	ENSMNEG00000045196	APOBEC3C	100	73.656	Macaca_nemestrina
ENSRROG00000028557	-	100	77.005	ENSMLEG00000029642	APOBEC3F	100	77.005	Mandrillus_leucophaeus
ENSRROG00000028557	-	100	72.043	ENSMLEG00000036992	APOBEC3C	100	72.043	Mandrillus_leucophaeus
ENSRROG00000028557	-	99	55.135	ENSMICG00000042615	-	89	55.135	Microcebus_murinus
ENSRROG00000028557	-	99	47.980	ENSMLUG00000023676	-	99	47.980	Myotis_lucifugus
ENSRROG00000028557	-	100	73.316	ENSNLEG00000035811	-	100	73.316	Nomascus_leucogenys
ENSRROG00000028557	-	100	73.118	ENSNLEG00000028392	APOBEC3C	100	73.118	Nomascus_leucogenys
ENSRROG00000028557	-	99	46.114	ENSOGAG00000030300	-	99	46.032	Otolemur_garnettii
ENSRROG00000028557	-	98	47.778	ENSOGAG00000033404	-	99	47.778	Otolemur_garnettii
ENSRROG00000028557	-	100	46.392	ENSOGAG00000032498	-	98	46.392	Otolemur_garnettii
ENSRROG00000028557	-	100	76.882	ENSPPAG00000028218	-	100	76.882	Pan_paniscus
ENSRROG00000028557	-	100	76.882	ENSPPAG00000014118	APOBEC3C	100	76.882	Pan_paniscus
ENSRROG00000028557	-	99	49.462	ENSPPRG00000003726	-	98	49.462	Panthera_pardus
ENSRROG00000028557	-	100	81.443	ENSPTRG00000014385	APOBEC3C	100	81.443	Pan_troglodytes
ENSRROG00000028557	-	100	77.320	ENSPTRG00000041588	APOBEC3D	100	77.320	Pan_troglodytes
ENSRROG00000028557	-	100	74.866	ENSPANG00000010775	APOBEC3F	100	75.482	Papio_anubis
ENSRROG00000028557	-	100	72.581	ENSPPYG00000011832	APOBEC3C	100	72.581	Pongo_abelii
ENSRROG00000028557	-	67	57.143	ENSPCOG00000018072	-	95	57.143	Propithecus_coquereli
ENSRROG00000028557	-	68	55.039	ENSPCOG00000022067	-	98	55.039	Propithecus_coquereli
ENSRROG00000028557	-	75	46.341	ENSPVAG00000009461	-	64	46.341	Pteropus_vampyrus
ENSRROG00000028557	-	100	79.444	ENSRBIG00000042297	-	100	79.444	Rhinopithecus_bieti
ENSRROG00000028557	-	100	80.645	ENSRBIG00000030323	-	100	80.645	Rhinopithecus_bieti
ENSRROG00000028557	-	100	98.454	ENSRBIG00000030834	-	100	98.454	Rhinopithecus_bieti
ENSRROG00000028557	-	99	71.895	ENSSBOG00000032780	-	100	71.895	Saimiri_boliviensis_boliviensis
ENSRROG00000028557	-	94	47.802	ENSUAMG00000004433	-	100	47.802	Ursus_americanus
ENSRROG00000028557	-	96	47.594	ENSUMAG00000014441	-	87	47.594	Ursus_maritimus
ENSRROG00000028557	-	80	51.235	ENSVVUG00000014628	-	91	52.027	Vulpes_vulpes