EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSRROG00000029045 (Gene tree)
Gene ID: 104682555
Gene Symbol: APOBEC3C
Alias: -
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 3B
Gene Type: protein_coding
Species: Rhinopithecus_roxellana
Status: putative
Strand: Plus strand
Length: 42689 bases
Position: chrKN299213.1:4509301-4551989
Accession: 104682555
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRROP00000009246	APOBEC_N	PF08210.11	5.2e-102	1	2
ENSRROP00000009246	APOBEC_N	PF08210.11	5.2e-102	2	2
ENSRROP00000009243	APOBEC_N	PF08210.11	8.3e-58	1	1
ENSRROP00000009242	APOBEC_N	PF08210.11	1.9e-57	1	1
ENSRROP00000009246	APOBEC_C	PF05240.14	1.1e-63	1	2
ENSRROP00000009246	APOBEC_C	PF05240.14	1.1e-63	2	2
ENSRROP00000009243	APOBEC_C	PF05240.14	4.9e-33	1	1
ENSRROP00000009242	APOBEC_C	PF05240.14	1.2e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRROT00000033336	-	306	-	ENSRROP00000009253	102 (aa)	-	A0A2K6NY98
ENSRROT00000033329	-	2709	XM_010389268	ENSRROP00000009246	373 (aa)	XP_010387570	A0A2K6NY96
ENSRROT00000033326	-	2746	XM_010389274	ENSRROP00000009243	190 (aa)	XP_010387576	A0A2K6NY87
ENSRROT00000033325	-	4003	-	ENSRROP00000009242	190 (aa)	-	A0A2K6NY90

Gene Model

Click here to download ENSRROG00000029045's gene model file

Pathways

Pathway ID	Pathway Name	Source
rro05170	Human immunodeficiency virus 1 infection	KEGG
rro05170	Human immunodeficiency virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRROG00000029045's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRROG00000029045	APOBEC3C	100	87.668	ENSRROG00000029996	-	100	87.668
ENSRROG00000029045	APOBEC3C	97	35.079	ENSRROG00000024699	APOBEC3H	90	37.179
ENSRROG00000029045	APOBEC3C	94	43.678	ENSRROG00000032866	AICDA	97	43.165
ENSRROG00000029045	APOBEC3C	98	33.333	ENSRROG00000030082	APOBEC2	88	33.668
ENSRROG00000029045	APOBEC3C	100	57.592	ENSRROG00000028773	APOBEC3G	99	57.592
ENSRROG00000029045	APOBEC3C	100	80.645	ENSRROG00000028557	-	100	80.645
ENSRROG00000029045	APOBEC3C	56	35.652	ENSRROG00000033576	APOBEC1	70	35.652

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRROG00000029045	APOBEC3C	100	82.105	ENSG00000244509	APOBEC3C	100	82.105	Homo_sapiens
ENSRROG00000029045	APOBEC3C	100	87.936	ENSG00000128394	APOBEC3F	100	87.936	Homo_sapiens
ENSRROG00000029045	APOBEC3C	100	77.419	ENSG00000243811	APOBEC3D	100	77.419	Homo_sapiens
ENSRROG00000029045	APOBEC3C	100	68.947	ENSANAG00000030088	-	99	67.024	Aotus_nancymaae
ENSRROG00000029045	APOBEC3C	69	68.939	ENSCJAG00000015317	-	100	68.939	Callithrix_jacchus
ENSRROG00000029045	APOBEC3C	98	50.000	ENSCAFG00020002615	-	99	50.000	Canis_lupus_dingo
ENSRROG00000029045	APOBEC3C	100	53.439	ENSTSYG00000034260	-	99	54.595	Carlito_syrichta
ENSRROG00000029045	APOBEC3C	96	57.377	ENSTSYG00000028254	-	99	57.377	Carlito_syrichta
ENSRROG00000029045	APOBEC3C	96	51.099	ENSTSYG00000030036	-	99	51.099	Carlito_syrichta
ENSRROG00000029045	APOBEC3C	98	67.204	ENSCCAG00000030932	-	84	67.204	Cebus_capucinus
ENSRROG00000029045	APOBEC3C	100	84.737	ENSCATG00000043226	APOBEC3C	100	84.737	Cercocebus_atys
ENSRROG00000029045	APOBEC3C	98	90.217	ENSCATG00000033502	-	95	90.217	Cercocebus_atys
ENSRROG00000029045	APOBEC3C	100	84.211	ENSCSAG00000006402	APOBEC3C	100	84.211	Chlorocebus_sabaeus
ENSRROG00000029045	APOBEC3C	100	83.690	ENSCSAG00000006382	APOBEC3F	100	83.690	Chlorocebus_sabaeus
ENSRROG00000029045	APOBEC3C	100	89.544	ENSCANG00000033269	-	100	89.544	Colobus_angolensis_palliatus
ENSRROG00000029045	APOBEC3C	100	86.316	ENSCANG00000039177	APOBEC3C	100	86.316	Colobus_angolensis_palliatus
ENSRROG00000029045	APOBEC3C	100	84.011	ENSCANG00000031957	-	100	83.690	Colobus_angolensis_palliatus
ENSRROG00000029045	APOBEC3C	100	94.370	ENSCANG00000032904	-	100	94.370	Colobus_angolensis_palliatus
ENSRROG00000029045	APOBEC3C	97	42.328	ENSDNOG00000044642	-	99	42.328	Dasypus_novemcinctus
ENSRROG00000029045	APOBEC3C	99	48.980	ENSEASG00005018641	-	96	48.980	Equus_asinus_asinus
ENSRROG00000029045	APOBEC3C	99	51.892	ENSECAG00000006071	-	100	48.387	Equus_caballus
ENSRROG00000029045	APOBEC3C	100	76.316	ENSGGOG00000036587	-	100	76.316	Gorilla_gorilla
ENSRROG00000029045	APOBEC3C	100	88.472	ENSGGOG00000038678	APOBEC3F	100	88.472	Gorilla_gorilla
ENSRROG00000029045	APOBEC3C	98	48.128	ENSHGLG00000017315	-	91	43.548	Heterocephalus_glaber_female
ENSRROG00000029045	APOBEC3C	98	48.128	ENSHGLG00100003105	-	93	48.128	Heterocephalus_glaber_male
ENSRROG00000029045	APOBEC3C	100	82.105	ENSMFAG00000016792	APOBEC3C	100	82.105	Macaca_fascicularis
ENSRROG00000029045	APOBEC3C	100	91.421	ENSMFAG00000004037	APOBEC3F	100	91.421	Macaca_fascicularis
ENSRROG00000029045	APOBEC3C	100	79.570	ENSMFAG00000002331	-	100	79.570	Macaca_fascicularis
ENSRROG00000029045	APOBEC3C	97	82.609	ENSMMUG00000004018	APOBEC3C	95	82.609	Macaca_mulatta
ENSRROG00000029045	APOBEC3C	100	90.489	ENSMMUG00000004017	APOBEC3F	99	90.270	Macaca_mulatta
ENSRROG00000029045	APOBEC3C	100	83.684	ENSMNEG00000045196	APOBEC3C	100	83.684	Macaca_nemestrina
ENSRROG00000029045	APOBEC3C	100	81.233	ENSMNEG00000043316	APOBEC3D	100	81.233	Macaca_nemestrina
ENSRROG00000029045	APOBEC3C	100	93.566	ENSMLEG00000029642	APOBEC3F	100	93.566	Mandrillus_leucophaeus
ENSRROG00000029045	APOBEC3C	100	84.737	ENSMLEG00000036992	APOBEC3C	100	84.737	Mandrillus_leucophaeus
ENSRROG00000029045	APOBEC3C	99	57.447	ENSMICG00000042615	-	89	57.447	Microcebus_murinus
ENSRROG00000029045	APOBEC3C	97	46.597	ENSMLUG00000023676	-	99	46.597	Myotis_lucifugus
ENSRROG00000029045	APOBEC3C	100	80.526	ENSNLEG00000028392	APOBEC3C	100	80.526	Nomascus_leucogenys
ENSRROG00000029045	APOBEC3C	100	69.689	ENSNLEG00000035811	-	100	69.689	Nomascus_leucogenys
ENSRROG00000029045	APOBEC3C	99	46.809	ENSOGAG00000030300	-	98	46.809	Otolemur_garnettii
ENSRROG00000029045	APOBEC3C	98	50.802	ENSOGAG00000032498	-	99	50.802	Otolemur_garnettii
ENSRROG00000029045	APOBEC3C	98	46.667	ENSOGAG00000033404	-	100	46.667	Otolemur_garnettii
ENSRROG00000029045	APOBEC3C	100	76.582	ENSPPAG00000028218	-	100	76.344	Pan_paniscus
ENSRROG00000029045	APOBEC3C	100	82.632	ENSPPAG00000014118	APOBEC3C	100	82.632	Pan_paniscus
ENSRROG00000029045	APOBEC3C	98	49.730	ENSPPRG00000003726	-	98	49.730	Panthera_pardus
ENSRROG00000029045	APOBEC3C	100	75.806	ENSPTRG00000041588	APOBEC3D	100	75.806	Pan_troglodytes
ENSRROG00000029045	APOBEC3C	100	88.740	ENSPTRG00000014385	APOBEC3C	100	88.740	Pan_troglodytes
ENSRROG00000029045	APOBEC3C	100	92.493	ENSPANG00000010775	APOBEC3F	100	92.493	Papio_anubis
ENSRROG00000029045	APOBEC3C	100	80.000	ENSPPYG00000011832	APOBEC3C	100	80.000	Pongo_abelii
ENSRROG00000029045	APOBEC3C	68	58.140	ENSPCOG00000022067	-	98	58.140	Propithecus_coquereli
ENSRROG00000029045	APOBEC3C	69	59.200	ENSPCOG00000018072	-	100	59.200	Propithecus_coquereli
ENSRROG00000029045	APOBEC3C	92	49.020	ENSPVAG00000009461	-	72	50.407	Pteropus_vampyrus
ENSRROG00000029045	APOBEC3C	100	100.000	ENSRBIG00000030323	-	100	100.000	Rhinopithecus_bieti
ENSRROG00000029045	APOBEC3C	100	87.936	ENSRBIG00000042297	-	100	91.720	Rhinopithecus_bieti
ENSRROG00000029045	APOBEC3C	100	81.183	ENSRBIG00000030834	-	100	81.183	Rhinopithecus_bieti
ENSRROG00000029045	APOBEC3C	100	70.261	ENSSBOG00000032780	-	100	70.261	Saimiri_boliviensis_boliviensis
ENSRROG00000029045	APOBEC3C	96	47.253	ENSUAMG00000004433	-	100	47.514	Ursus_americanus
ENSRROG00000029045	APOBEC3C	98	48.370	ENSUMAG00000014441	-	87	48.128	Ursus_maritimus
ENSRROG00000029045	APOBEC3C	77	52.349	ENSVVUG00000014628	-	91	52.055	Vulpes_vulpes