EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSRROG00000029136 (Gene tree)
Gene ID: 104676628
Gene Symbol: MBD4
Alias: MED1
Full Name: methyl-CpG binding domain 4%2C DNA glycosylase
Gene Type: protein_coding
Species: Rhinopithecus_roxellana
Status: putative
Strand: Minus strand
Length: 10295 bases
Position: chrKN298346.1:67748-78042
Accession: 104676628
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRROP00000009387	MBD	PF01429.19	2.9e-21	1	1
ENSRROP00000009390	MBD	PF01429.19	8.3e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRROT00000033475	MBD4-201	2310	XM_010381503	ENSRROP00000009387	572 (aa)	XP_010379805	A0A2K6NYN3
ENSRROT00000033478	MBD4-202	1509	-	ENSRROP00000009390	502 (aa)	-	A0A2K6NYN7

Gene Model

Click here to download ENSRROG00000029136's gene model file

Pathways

Pathway ID	Pathway Name	Source
rro03410	Base excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRROG00000029136's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRROG00000029136	MBD4	100	94.087	ENSG00000129071	MBD4	100	94.087	Homo_sapiens
ENSRROG00000029136	MBD4	64	52.459	ENSAPOG00000021668	mbd4	84	52.459	Acanthochromis_polyacanthus
ENSRROG00000029136	MBD4	99	76.256	ENSAMEG00000004562	MBD4	99	76.256	Ailuropoda_melanoleuca
ENSRROG00000029136	MBD4	52	59.494	ENSAOCG00000001157	mbd4	62	59.494	Amphiprion_ocellaris
ENSRROG00000029136	MBD4	85	38.476	ENSAPEG00000016131	mbd4	95	40.612	Amphiprion_percula
ENSRROG00000029136	MBD4	99	70.855	ENSBTAG00000021645	MBD4	100	70.855	Bos_taurus
ENSRROG00000029136	MBD4	100	86.701	ENSCJAG00000017293	MBD4	100	86.701	Callithrix_jacchus
ENSRROG00000029136	MBD4	99	75.868	ENSCAFG00000004867	MBD4	99	75.868	Canis_familiaris
ENSRROG00000029136	MBD4	99	75.868	ENSCAFG00020007082	MBD4	99	75.868	Canis_lupus_dingo
ENSRROG00000029136	MBD4	99	69.634	ENSCHIG00000009760	MBD4	100	69.634	Capra_hircus
ENSRROG00000029136	MBD4	100	87.910	ENSCCAG00000029796	MBD4	100	87.910	Cebus_capucinus
ENSRROG00000029136	MBD4	100	98.077	ENSCATG00000035211	MBD4	100	98.077	Cercocebus_atys
ENSRROG00000029136	MBD4	98	69.718	ENSCLAG00000008974	MBD4	99	69.366	Chinchilla_lanigera
ENSRROG00000029136	MBD4	100	97.028	ENSCSAG00000009037	MBD4	100	97.028	Chlorocebus_sabaeus
ENSRROG00000029136	MBD4	65	87.023	ENSCPBG00000014704	MBD4	60	87.023	Chrysemys_picta_bellii
ENSRROG00000029136	MBD4	100	98.601	ENSCANG00000007120	MBD4	100	98.601	Colobus_angolensis_palliatus
ENSRROG00000029136	MBD4	99	67.308	ENSCGRG00001003507	Mbd4	100	67.308	Cricetulus_griseus_chok1gshd
ENSRROG00000029136	MBD4	99	67.308	ENSCGRG00000010974	Mbd4	100	67.308	Cricetulus_griseus_crigri
ENSRROG00000029136	MBD4	99	76.182	ENSDNOG00000049619	MBD4	100	76.182	Dasypus_novemcinctus
ENSRROG00000029136	MBD4	80	62.955	ENSDORG00000000902	-	95	62.955	Dipodomys_ordii
ENSRROG00000029136	MBD4	54	50.382	ENSEBUG00000010816	mbd4	73	50.382	Eptatretus_burgeri
ENSRROG00000029136	MBD4	99	78.185	ENSEASG00005014800	MBD4	100	78.185	Equus_asinus_asinus
ENSRROG00000029136	MBD4	99	78.185	ENSECAG00000022106	MBD4	100	78.185	Equus_caballus
ENSRROG00000029136	MBD4	95	60.727	ENSEEUG00000011459	MBD4	93	63.690	Erinaceus_europaeus
ENSRROG00000029136	MBD4	99	77.682	ENSFCAG00000000083	MBD4	99	77.682	Felis_catus
ENSRROG00000029136	MBD4	64	73.826	ENSFALG00000013663	MBD4	67	81.061	Ficedula_albicollis
ENSRROG00000029136	MBD4	70	87.786	ENSGAGG00000018644	MBD4	65	87.786	Gopherus_agassizii
ENSRROG00000029136	MBD4	100	92.599	ENSGGOG00000010698	MBD4	100	92.599	Gorilla_gorilla
ENSRROG00000029136	MBD4	96	72.890	ENSHGLG00000009034	MBD4	98	72.890	Heterocephalus_glaber_female
ENSRROG00000029136	MBD4	96	72.890	ENSHGLG00100000135	MBD4	98	72.890	Heterocephalus_glaber_male
ENSRROG00000029136	MBD4	99	73.063	ENSSTOG00000020663	MBD4	100	73.063	Ictidomys_tridecemlineatus
ENSRROG00000029136	MBD4	83	37.447	ENSKMAG00000015015	mbd4	97	37.447	Kryptolebias_marmoratus
ENSRROG00000029136	MBD4	99	74.697	ENSLAFG00000010609	MBD4	99	74.697	Loxodonta_africana
ENSRROG00000029136	MBD4	100	97.028	ENSMFAG00000002266	MBD4	100	97.028	Macaca_fascicularis
ENSRROG00000029136	MBD4	100	96.614	ENSMMUG00000012723	MBD4	100	96.614	Macaca_mulatta
ENSRROG00000029136	MBD4	96	96.715	ENSMNEG00000029752	MBD4	99	96.715	Macaca_nemestrina
ENSRROG00000029136	MBD4	100	97.902	ENSMLEG00000024859	MBD4	100	97.902	Mandrillus_leucophaeus
ENSRROG00000029136	MBD4	100	80.484	ENSMICG00000008022	MBD4	100	80.484	Microcebus_murinus
ENSRROG00000029136	MBD4	75	49.738	ENSMOCG00000002466	-	99	49.215	Microtus_ochrogaster
ENSRROG00000029136	MBD4	86	58.683	ENSMODG00000006399	-	99	58.283	Monodelphis_domestica
ENSRROG00000029136	MBD4	99	66.434	MGP_CAROLIEiJ_G0028760	Mbd4	100	66.434	Mus_caroli
ENSRROG00000029136	MBD4	99	65.909	ENSMUSG00000030322	Mbd4	100	65.909	Mus_musculus
ENSRROG00000029136	MBD4	99	67.190	MGP_PahariEiJ_G0022511	-	100	67.190	Mus_pahari
ENSRROG00000029136	MBD4	99	65.385	MGP_SPRETEiJ_G0029788	Mbd4	100	65.385	Mus_spretus
ENSRROG00000029136	MBD4	99	74.869	ENSMPUG00000017195	MBD4	99	74.869	Mustela_putorius_furo
ENSRROG00000029136	MBD4	94	78.938	ENSMLUG00000014766	MBD4	97	79.924	Myotis_lucifugus
ENSRROG00000029136	MBD4	100	93.092	ENSNLEG00000005337	MBD4	100	93.092	Nomascus_leucogenys
ENSRROG00000029136	MBD4	99	64.421	ENSOPRG00000000473	MBD4	99	64.421	Ochotona_princeps
ENSRROG00000029136	MBD4	85	41.573	ENSONIG00000017212	mbd4	100	41.573	Oreochromis_niloticus
ENSRROG00000029136	MBD4	72	45.626	ENSOANG00000004589	-	89	47.949	Ornithorhynchus_anatinus
ENSRROG00000029136	MBD4	99	67.354	ENSOCUG00000013006	MBD4	100	67.354	Oryctolagus_cuniculus
ENSRROG00000029136	MBD4	99	76.522	ENSOGAG00000010236	MBD4	100	76.174	Otolemur_garnettii
ENSRROG00000029136	MBD4	99	69.808	ENSOARG00000014699	MBD4	100	69.808	Ovis_aries
ENSRROG00000029136	MBD4	100	93.739	ENSPPAG00000036528	MBD4	100	93.739	Pan_paniscus
ENSRROG00000029136	MBD4	99	77.448	ENSPPRG00000016480	MBD4	99	77.448	Panthera_pardus
ENSRROG00000029136	MBD4	100	92.599	ENSPTRG00000015377	MBD4	100	92.599	Pan_troglodytes
ENSRROG00000029136	MBD4	100	97.410	ENSPANG00000015047	MBD4	100	97.410	Papio_anubis
ENSRROG00000029136	MBD4	65	83.824	ENSPSIG00000007892	MBD4	59	83.824	Pelodiscus_sinensis
ENSRROG00000029136	MBD4	90	61.494	ENSPEMG00000006226	Mbd4	97	61.494	Peromyscus_maniculatus_bairdii
ENSRROG00000029136	MBD4	89	58.015	ENSPCIG00000002276	-	98	57.634	Phascolarctos_cinereus
ENSRROG00000029136	MBD4	83	41.002	ENSPFOG00000014471	mbd4	98	40.406	Poecilia_formosa
ENSRROG00000029136	MBD4	100	93.717	ENSPPYG00000013417	MBD4	100	93.717	Pongo_abelii
ENSRROG00000029136	MBD4	95	70.524	ENSPCAG00000012915	MBD4	99	70.524	Procavia_capensis
ENSRROG00000029136	MBD4	99	78.510	ENSPVAG00000005238	MBD4	99	78.163	Pteropus_vampyrus
ENSRROG00000029136	MBD4	99	66.609	ENSRNOG00000010919	Mbd4	100	66.609	Rattus_norvegicus
ENSRROG00000029136	MBD4	100	99.650	ENSRBIG00000027722	MBD4	100	99.650	Rhinopithecus_bieti
ENSRROG00000029136	MBD4	99	87.847	ENSSBOG00000016810	MBD4	100	87.326	Saimiri_boliviensis_boliviensis
ENSRROG00000029136	MBD4	93	55.823	ENSSHAG00000012953	MBD4	92	56.203	Sarcophilus_harrisii
ENSRROG00000029136	MBD4	85	43.874	ENSSFOG00015016292	mbd4	95	43.676	Scleropages_formosus
ENSRROG00000029136	MBD4	86	44.639	ENSSMAG00000013958	-	68	44.158	Scophthalmus_maximus
ENSRROG00000029136	MBD4	80	61.588	ENSSARG00000004496	-	80	61.588	Sorex_araneus
ENSRROG00000029136	MBD4	69	86.154	ENSSPUG00000017344	MBD4	67	86.154	Sphenodon_punctatus
ENSRROG00000029136	MBD4	99	74.869	ENSSSCG00000033303	MBD4	100	74.869	Sus_scrofa
ENSRROG00000029136	MBD4	83	37.391	ENSTNIG00000017927	mbd4	100	37.199	Tetraodon_nigroviridis
ENSRROG00000029136	MBD4	95	60.550	ENSTBEG00000003041	-	86	60.550	Tupaia_belangeri
ENSRROG00000029136	MBD4	97	76.241	ENSTTRG00000011265	MBD4	100	76.241	Tursiops_truncatus
ENSRROG00000029136	MBD4	86	78.758	ENSUAMG00000000814	MBD4	99	78.758	Ursus_americanus
ENSRROG00000029136	MBD4	99	76.440	ENSUMAG00000017542	MBD4	100	76.440	Ursus_maritimus
ENSRROG00000029136	MBD4	60	95.238	ENSVPAG00000004040	-	55	95.238	Vicugna_pacos
ENSRROG00000029136	MBD4	99	75.217	ENSVVUG00000014222	MBD4	99	75.347	Vulpes_vulpes
ENSRROG00000029136	MBD4	83	41.538	ENSXETG00000026622	mbd4	89	41.538	Xenopus_tropicalis