EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSRROG00000029638 (Gene tree)
Gene ID: 104668632
Gene Symbol: YBX3
Alias: CSDA|CSDA1|ZONAB|dbpA
Full Name: Y-box binding protein 3
Gene Type: protein_coding
Species: Rhinopithecus_roxellana
Status: putative
Strand: Minus strand
Length: 24944 bases
Position: chrKN296770.1:496139-521082
Accession: 104668632
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRROP00000010469	CSD	PF00313.22	6.7e-26	1	1
ENSRROP00000010467	CSD	PF00313.22	7.8e-26	1	1
ENSRROP00000010474	CSD	PF00313.22	2.5e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRROT00000034572	YBX3-203	897	-	ENSRROP00000010474	298 (aa)	-	A0A2K6P1S2
ENSRROT00000034565	YBX3-201	2888	XM_010371391	ENSRROP00000010467	371 (aa)	XP_010369693	A0A2K6P1R0
ENSRROT00000034567	YBX3-202	2350	XM_010371393	ENSRROP00000010469	302 (aa)	XP_010369695	A0A2K6P1R7

Gene Model

Click here to download ENSRROG00000029638's gene model file

Pathways

Pathway ID	Pathway Name	Source
rro04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRROG00000029638's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRROG00000029638	YBX3	80	51.768	ENSRROG00000006964	-	87	54.762
ENSRROG00000029638	YBX3	81	54.545	ENSRROG00000034332	-	97	55.932

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRROG00000029638	YBX3	100	98.387	ENSG00000060138	YBX3	100	98.387	Homo_sapiens
ENSRROG00000029638	YBX3	92	88.235	ENSAMEG00000009393	YBX3	95	89.706	Ailuropoda_melanoleuca
ENSRROG00000029638	YBX3	71	89.423	ENSAPLG00000003147	YBX3	70	100.000	Anas_platyrhynchos
ENSRROG00000029638	YBX3	100	97.035	ENSANAG00000024492	-	100	98.418	Aotus_nancymaae
ENSRROG00000029638	YBX3	98	87.692	ENSANAG00000033366	-	93	87.692	Aotus_nancymaae
ENSRROG00000029638	YBX3	100	81.137	ENSBTAG00000009663	YBX3	100	77.778	Bos_taurus
ENSRROG00000029638	YBX3	100	95.957	ENSCJAG00000021660	-	100	95.957	Callithrix_jacchus
ENSRROG00000029638	YBX3	77	90.476	ENSCJAG00000033824	-	98	93.243	Callithrix_jacchus
ENSRROG00000029638	YBX3	78	92.014	ENSCAFG00000013401	YBX3	100	92.202	Canis_familiaris
ENSRROG00000029638	YBX3	100	87.748	ENSCAFG00020006412	YBX3	100	86.093	Canis_lupus_dingo
ENSRROG00000029638	YBX3	100	81.137	ENSCHIG00000010863	YBX3	100	82.210	Capra_hircus
ENSRROG00000029638	YBX3	77	94.425	ENSTSYG00000004204	-	88	94.425	Carlito_syrichta
ENSRROG00000029638	YBX3	100	75.166	ENSTSYG00000035821	-	97	80.357	Carlito_syrichta
ENSRROG00000029638	YBX3	77	86.411	ENSCAPG00000015039	YBX3	93	86.411	Cavia_aperea
ENSRROG00000029638	YBX3	79	87.372	ENSCPOG00000011329	YBX3	86	87.372	Cavia_porcellus
ENSRROG00000029638	YBX3	100	96.370	ENSCCAG00000016469	YBX3	100	96.370	Cebus_capucinus
ENSRROG00000029638	YBX3	100	98.123	ENSCATG00000034411	YBX3	100	98.123	Cercocebus_atys
ENSRROG00000029638	YBX3	77	86.760	ENSCLAG00000016030	YBX3	94	86.760	Chinchilla_lanigera
ENSRROG00000029638	YBX3	100	98.660	ENSCSAG00000008744	YBX3	100	98.660	Chlorocebus_sabaeus
ENSRROG00000029638	YBX3	98	78.261	ENSCHOG00000011988	YBX3	77	82.081	Choloepus_hoffmanni
ENSRROG00000029638	YBX3	78	79.725	ENSCPBG00000014147	YBX3	81	78.840	Chrysemys_picta_bellii
ENSRROG00000029638	YBX3	61	54.011	ENSCING00000010654	yb1/2/3	73	49.767	Ciona_intestinalis
ENSRROG00000029638	YBX3	85	99.048	ENSCANG00000036801	YBX3	100	99.187	Colobus_angolensis_palliatus
ENSRROG00000029638	YBX3	100	85.445	ENSCGRG00001016148	Ybx3	100	84.097	Cricetulus_griseus_chok1gshd
ENSRROG00000029638	YBX3	77	90.411	ENSCGRG00000004563	Ybx3	98	89.041	Cricetulus_griseus_crigri
ENSRROG00000029638	YBX3	90	80.882	ENSDORG00000009103	Ybx3	81	90.244	Dipodomys_ordii
ENSRROG00000029638	YBX3	77	84.912	ENSETEG00000002557	YBX3	99	84.155	Echinops_telfairi
ENSRROG00000029638	YBX3	100	86.242	ENSEASG00005014726	YBX3	97	88.701	Equus_asinus_asinus
ENSRROG00000029638	YBX3	100	89.933	ENSECAG00000013777	YBX3	100	90.604	Equus_caballus
ENSRROG00000029638	YBX3	77	92.254	ENSEEUG00000010415	YBX3	100	92.254	Erinaceus_europaeus
ENSRROG00000029638	YBX3	100	91.803	ENSFCAG00000027748	YBX3	100	93.115	Felis_catus
ENSRROG00000029638	YBX3	72	94.444	ENSFALG00000003661	YBX3	71	98.837	Ficedula_albicollis
ENSRROG00000029638	YBX3	79	82.155	ENSFDAG00000021192	YBX3	92	83.275	Fukomys_damarensis
ENSRROG00000029638	YBX3	100	69.055	ENSGALG00000031890	YBX3	70	97.849	Gallus_gallus
ENSRROG00000029638	YBX3	78	79.725	ENSGAGG00000017780	YBX3	77	83.857	Gopherus_agassizii
ENSRROG00000029638	YBX3	100	98.123	ENSGGOG00000001352	YBX3	100	98.123	Gorilla_gorilla
ENSRROG00000029638	YBX3	74	79.273	ENSHGLG00000015495	-	95	72.446	Heterocephalus_glaber_female
ENSRROG00000029638	YBX3	81	75.490	ENSHGLG00000014798	-	86	76.768	Heterocephalus_glaber_female
ENSRROG00000029638	YBX3	72	88.532	ENSHGLG00100003589	YBX3	87	88.532	Heterocephalus_glaber_male
ENSRROG00000029638	YBX3	93	84.638	ENSSTOG00000032577	-	100	83.019	Ictidomys_tridecemlineatus
ENSRROG00000029638	YBX3	77	86.063	ENSSTOG00000002108	-	88	86.063	Ictidomys_tridecemlineatus
ENSRROG00000029638	YBX3	80	68.687	ENSJJAG00000014239	Ybx3	96	85.227	Jaculus_jaculus
ENSRROG00000029638	YBX3	100	91.105	ENSLAFG00000017247	YBX3	100	91.644	Loxodonta_africana
ENSRROG00000029638	YBX3	100	98.387	ENSMFAG00000039369	YBX3	100	98.387	Macaca_fascicularis
ENSRROG00000029638	YBX3	88	98.769	ENSMMUG00000022469	YBX3	100	98.769	Macaca_mulatta
ENSRROG00000029638	YBX3	100	98.118	ENSMNEG00000045109	YBX3	100	98.118	Macaca_nemestrina
ENSRROG00000029638	YBX3	92	85.131	ENSMLEG00000033618	YBX3	79	98.606	Mandrillus_leucophaeus
ENSRROG00000029638	YBX3	70	98.095	ENSMGAG00000014224	YBX3	93	100.000	Meleagris_gallopavo
ENSRROG00000029638	YBX3	88	88.379	ENSMAUG00000012185	Ybx3	98	85.981	Mesocricetus_auratus
ENSRROG00000029638	YBX3	100	89.785	ENSMICG00000038002	-	100	91.398	Microcebus_murinus
ENSRROG00000029638	YBX3	100	74.503	ENSMICG00000031459	-	100	70.530	Microcebus_murinus
ENSRROG00000029638	YBX3	84	89.068	ENSMOCG00000016291	Ybx3	96	90.847	Microtus_ochrogaster
ENSRROG00000029638	YBX3	77	82.292	ENSMODG00000018248	YBX3	91	82.986	Monodelphis_domestica
ENSRROG00000029638	YBX3	100	84.636	MGP_CAROLIEiJ_G0028947	Ybx3	100	83.558	Mus_caroli
ENSRROG00000029638	YBX3	100	84.636	ENSMUSG00000030189	Ybx3	100	83.558	Mus_musculus
ENSRROG00000029638	YBX3	100	85.175	MGP_PahariEiJ_G0022709	Ybx3	100	84.097	Mus_pahari
ENSRROG00000029638	YBX3	100	84.906	MGP_SPRETEiJ_G0029994	Ybx3	100	83.827	Mus_spretus
ENSRROG00000029638	YBX3	100	79.003	ENSMPUG00000011810	YBX3	100	78.478	Mustela_putorius_furo
ENSRROG00000029638	YBX3	71	92.937	ENSMLUG00000007476	YBX3	100	91.078	Myotis_lucifugus
ENSRROG00000029638	YBX3	80	85.522	ENSNGAG00000000710	Ybx3	91	83.333	Nannospalax_galili
ENSRROG00000029638	YBX3	96	93.239	ENSNLEG00000034844	YBX3	100	93.239	Nomascus_leucogenys
ENSRROG00000029638	YBX3	82	80.263	ENSODEG00000017957	YBX3	94	81.308	Octodon_degus
ENSRROG00000029638	YBX3	80	87.119	ENSOCUG00000001889	YBX3	85	86.780	Oryctolagus_cuniculus
ENSRROG00000029638	YBX3	100	89.182	ENSOGAG00000013245	YBX3	100	88.918	Otolemur_garnettii
ENSRROG00000029638	YBX3	70	98.980	ENSOARG00000020919	YBX3	99	82.492	Ovis_aries
ENSRROG00000029638	YBX3	100	91.398	ENSPPAG00000039068	YBX3	100	91.398	Pan_paniscus
ENSRROG00000029638	YBX3	100	91.475	ENSPPRG00000005859	YBX3	100	92.787	Panthera_pardus
ENSRROG00000029638	YBX3	77	92.632	ENSPTIG00000005322	YBX3	81	91.986	Panthera_tigris_altaica
ENSRROG00000029638	YBX3	100	97.861	ENSPTRG00000004681	YBX3	100	97.861	Pan_troglodytes
ENSRROG00000029638	YBX3	100	98.387	ENSPANG00000010280	YBX3	100	98.387	Papio_anubis
ENSRROG00000029638	YBX3	72	84.259	ENSPSIG00000009247	YBX3	95	100.000	Pelodiscus_sinensis
ENSRROG00000029638	YBX3	87	88.272	ENSPEMG00000012132	-	99	86.916	Peromyscus_maniculatus_bairdii
ENSRROG00000029638	YBX3	82	88.306	ENSPEMG00000010391	-	85	91.150	Peromyscus_maniculatus_bairdii
ENSRROG00000029638	YBX3	70	80.385	ENSPCIG00000029949	YBX3	100	78.462	Phascolarctos_cinereus
ENSRROG00000029638	YBX3	100	98.383	ENSPPYG00000004279	YBX3	100	98.383	Pongo_abelii
ENSRROG00000029638	YBX3	80	100.000	ENSPCAG00000001397	YBX3	98	90.210	Procavia_capensis
ENSRROG00000029638	YBX3	50	70.732	ENSPCOG00000011663	YBX3	100	85.328	Propithecus_coquereli
ENSRROG00000029638	YBX3	100	78.400	ENSPVAG00000006740	YBX3	77	90.690	Pteropus_vampyrus
ENSRROG00000029638	YBX3	100	85.714	ENSRNOG00000005480	Ybx3	100	84.367	Rattus_norvegicus
ENSRROG00000029638	YBX3	100	99.730	ENSRBIG00000039208	YBX3	100	99.730	Rhinopithecus_bieti
ENSRROG00000029638	YBX3	92	87.464	ENSSBOG00000030573	YBX3	87	95.593	Saimiri_boliviensis_boliviensis
ENSRROG00000029638	YBX3	65	98.837	ENSSHAG00000003262	YBX3	98	79.725	Sarcophilus_harrisii
ENSRROG00000029638	YBX3	100	87.664	ENSSSCG00000000633	YBX3	100	89.239	Sus_scrofa
ENSRROG00000029638	YBX3	70	98.077	ENSTGUG00000012047	YBX3	74	98.077	Taeniopygia_guttata
ENSRROG00000029638	YBX3	100	86.523	ENSTBEG00000012570	YBX3	100	84.097	Tupaia_belangeri
ENSRROG00000029638	YBX3	71	84.586	ENSTTRG00000008045	YBX3	100	84.586	Tursiops_truncatus
ENSRROG00000029638	YBX3	75	87.770	ENSUAMG00000016662	YBX3	100	88.129	Ursus_americanus
ENSRROG00000029638	YBX3	77	91.228	ENSUMAG00000016118	YBX3	94	91.289	Ursus_maritimus
ENSRROG00000029638	YBX3	58	100.000	ENSVPAG00000000876	YBX3	100	72.183	Vicugna_pacos
ENSRROG00000029638	YBX3	75	88.489	ENSVVUG00000004956	YBX3	100	88.849	Vulpes_vulpes
ENSRROG00000029638	YBX3	73	71.622	ENSXETG00000016239	ybx3	90	65.044	Xenopus_tropicalis