EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSRROG00000030035 (Gene tree)
Gene ID: 104664922
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Rhinopithecus_roxellana
Status: putative
Strand: Minus strand
Length: 35366 bases
Position: chrKN296093.1:209887-245252
Accession: 104664922
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRROP00000011385	EST1	PF10374.9	1.2e-23	1	1
ENSRROP00000011385	EST1_DNA_bind	PF10373.9	5e-40	1	2
ENSRROP00000011385	EST1_DNA_bind	PF10373.9	5e-40	2	2
ENSRROP00000011385	PIN_4	PF13638.6	4.7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRROT00000035488	SMG5-201	4632	XM_010366613	ENSRROP00000011385	1016 (aa)	XP_010364915	A0A2K6P4C4

Gene Model

Click here to download ENSRROG00000030035's gene model file

Pathways

Pathway ID	Pathway Name	Source
rro03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRROG00000030035's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRROG00000030035	SMG5	100	98.917	ENSG00000198952	SMG5	100	98.917	Homo_sapiens
ENSRROG00000030035	SMG5	99	67.255	ENSAPOG00000019690	smg5	99	66.503	Acanthochromis_polyacanthus
ENSRROG00000030035	SMG5	98	92.548	ENSAMEG00000014458	SMG5	100	92.548	Ailuropoda_melanoleuca
ENSRROG00000030035	SMG5	99	64.818	ENSACIG00000001353	smg5	99	66.763	Amphilophus_citrinellus
ENSRROG00000030035	SMG5	98	64.631	ENSAOCG00000019483	smg5	93	66.496	Amphiprion_ocellaris
ENSRROG00000030035	SMG5	98	65.907	ENSAPEG00000022949	smg5	98	66.235	Amphiprion_percula
ENSRROG00000030035	SMG5	99	65.868	ENSATEG00000005348	smg5	99	67.313	Anabas_testudineus
ENSRROG00000030035	SMG5	98	78.732	ENSAPLG00000010263	SMG5	100	78.439	Anas_platyrhynchos
ENSRROG00000030035	SMG5	100	97.933	ENSANAG00000032899	SMG5	100	97.933	Aotus_nancymaae
ENSRROG00000030035	SMG5	99	64.587	ENSACLG00000009311	smg5	99	66.218	Astatotilapia_calliptera
ENSRROG00000030035	SMG5	100	95.768	ENSBTAG00000009435	SMG5	100	95.768	Bos_taurus
ENSRROG00000030035	SMG5	99	44.197	ENSBTAG00000021747	-	99	43.575	Bos_taurus
ENSRROG00000030035	SMG5	100	97.933	ENSCJAG00000005684	SMG5	100	97.933	Callithrix_jacchus
ENSRROG00000030035	SMG5	100	94.587	ENSCAFG00000016839	SMG5	100	93.799	Canis_familiaris
ENSRROG00000030035	SMG5	100	94.587	ENSCAFG00020006061	SMG5	100	93.799	Canis_lupus_dingo
ENSRROG00000030035	SMG5	99	44.906	ENSCHIG00000006323	-	99	43.652	Capra_hircus
ENSRROG00000030035	SMG5	100	95.669	ENSCHIG00000007709	SMG5	100	95.669	Capra_hircus
ENSRROG00000030035	SMG5	100	96.853	ENSTSYG00000004099	SMG5	100	96.853	Carlito_syrichta
ENSRROG00000030035	SMG5	97	74.848	ENSCAPG00000003631	SMG5	100	75.493	Cavia_aperea
ENSRROG00000030035	SMG5	100	96.071	ENSCPOG00000015696	SMG5	100	95.776	Cavia_porcellus
ENSRROG00000030035	SMG5	100	97.933	ENSCCAG00000027409	SMG5	100	97.933	Cebus_capucinus
ENSRROG00000030035	SMG5	100	99.606	ENSCATG00000030539	SMG5	100	99.606	Cercocebus_atys
ENSRROG00000030035	SMG5	100	96.365	ENSCLAG00000003983	SMG5	100	96.365	Chinchilla_lanigera
ENSRROG00000030035	SMG5	100	99.508	ENSCSAG00000002120	SMG5	100	99.508	Chlorocebus_sabaeus
ENSRROG00000030035	SMG5	54	93.431	ENSCHOG00000008741	-	57	93.431	Choloepus_hoffmanni
ENSRROG00000030035	SMG5	94	78.296	ENSCPBG00000025848	SMG5	100	77.992	Chrysemys_picta_bellii
ENSRROG00000030035	SMG5	93	35.088	ENSCING00000008706	-	99	35.179	Ciona_intestinalis
ENSRROG00000030035	SMG5	100	95.571	ENSCANG00000029208	SMG5	100	95.571	Colobus_angolensis_palliatus
ENSRROG00000030035	SMG5	100	92.731	ENSCGRG00001006336	Smg5	100	92.338	Cricetulus_griseus_chok1gshd
ENSRROG00000030035	SMG5	98	92.757	ENSCGRG00000005111	Smg5	100	92.346	Cricetulus_griseus_crigri
ENSRROG00000030035	SMG5	99	65.500	ENSCSEG00000014220	smg5	92	78.251	Cynoglossus_semilaevis
ENSRROG00000030035	SMG5	99	60.721	ENSCVAG00000000529	smg5	99	61.613	Cyprinodon_variegatus
ENSRROG00000030035	SMG5	92	36.825	ENSDNOG00000039862	-	100	35.338	Dasypus_novemcinctus
ENSRROG00000030035	SMG5	100	91.437	ENSDNOG00000000051	SMG5	100	91.437	Dasypus_novemcinctus
ENSRROG00000030035	SMG5	100	93.517	ENSDORG00000010382	Smg5	100	93.320	Dipodomys_ordii
ENSRROG00000030035	SMG5	66	35.484	FBgn0019890	Smg5	62	35.484	Drosophila_melanogaster
ENSRROG00000030035	SMG5	82	96.117	ENSETEG00000010336	SMG5	83	96.117	Echinops_telfairi
ENSRROG00000030035	SMG5	90	46.170	ENSEBUG00000003739	smg5	98	45.895	Eptatretus_burgeri
ENSRROG00000030035	SMG5	100	96.654	ENSEASG00005019122	SMG5	100	96.654	Equus_asinus_asinus
ENSRROG00000030035	SMG5	100	96.654	ENSECAG00000001389	SMG5	100	96.654	Equus_caballus
ENSRROG00000030035	SMG5	72	97.983	ENSEEUG00000012690	SMG5	73	97.983	Erinaceus_europaeus
ENSRROG00000030035	SMG5	99	65.063	ENSELUG00000012585	smg5	99	64.966	Esox_lucius
ENSRROG00000030035	SMG5	100	93.898	ENSFCAG00000011783	SMG5	100	93.215	Felis_catus
ENSRROG00000030035	SMG5	58	81.803	ENSFALG00000001166	-	99	81.910	Ficedula_albicollis
ENSRROG00000030035	SMG5	98	92.951	ENSFDAG00000017388	SMG5	100	92.850	Fukomys_damarensis
ENSRROG00000030035	SMG5	97	62.260	ENSFHEG00000013939	smg5	95	68.476	Fundulus_heteroclitus
ENSRROG00000030035	SMG5	99	61.214	ENSGMOG00000007310	smg5	92	76.606	Gadus_morhua
ENSRROG00000030035	SMG5	99	77.724	ENSGALG00000029918	-	100	77.429	Gallus_gallus
ENSRROG00000030035	SMG5	100	79.107	ENSGAGG00000016131	SMG5	100	78.917	Gopherus_agassizii
ENSRROG00000030035	SMG5	100	98.917	ENSGGOG00000010932	SMG5	100	98.917	Gorilla_gorilla
ENSRROG00000030035	SMG5	99	64.115	ENSHBUG00000008654	smg5	99	65.271	Haplochromis_burtoni
ENSRROG00000030035	SMG5	100	92.731	ENSHGLG00000019152	SMG5	100	92.927	Heterocephalus_glaber_female
ENSRROG00000030035	SMG5	90	92.771	ENSHGLG00100015948	SMG5	99	92.990	Heterocephalus_glaber_male
ENSRROG00000030035	SMG5	86	73.350	ENSHCOG00000010229	smg5	83	78.571	Hippocampus_comes
ENSRROG00000030035	SMG5	99	61.378	ENSIPUG00000006624	Smg5	99	61.987	Ictalurus_punctatus
ENSRROG00000030035	SMG5	100	96.460	ENSSTOG00000001780	SMG5	100	96.460	Ictidomys_tridecemlineatus
ENSRROG00000030035	SMG5	100	92.738	ENSJJAG00000022763	Smg5	100	92.542	Jaculus_jaculus
ENSRROG00000030035	SMG5	50	59.341	ENSKMAG00000014586	smg5	99	61.333	Kryptolebias_marmoratus
ENSRROG00000030035	SMG5	99	66.409	ENSLBEG00000002145	smg5	99	66.344	Labrus_bergylta
ENSRROG00000030035	SMG5	100	64.957	ENSLACG00000010521	SMG5	100	64.862	Latimeria_chalumnae
ENSRROG00000030035	SMG5	96	79.108	ENSLOCG00000008380	smg5	92	79.147	Lepisosteus_oculatus
ENSRROG00000030035	SMG5	100	94.193	ENSLAFG00000006241	SMG5	100	94.193	Loxodonta_africana
ENSRROG00000030035	SMG5	100	99.508	ENSMFAG00000045357	SMG5	100	99.508	Macaca_fascicularis
ENSRROG00000030035	SMG5	100	99.409	ENSMMUG00000000090	SMG5	100	99.409	Macaca_mulatta
ENSRROG00000030035	SMG5	100	99.409	ENSMNEG00000044425	SMG5	100	99.409	Macaca_nemestrina
ENSRROG00000030035	SMG5	100	93.235	ENSMLEG00000041192	SMG5	100	93.235	Mandrillus_leucophaeus
ENSRROG00000030035	SMG5	99	61.106	ENSMAMG00000010683	smg5	58	56.423	Mastacembelus_armatus
ENSRROG00000030035	SMG5	63	58.559	ENSMZEG00005016543	smg5	100	59.125	Maylandia_zebra
ENSRROG00000030035	SMG5	99	63.645	ENSMZEG00005015815	smg5	99	64.599	Maylandia_zebra
ENSRROG00000030035	SMG5	100	91.847	ENSMAUG00000010381	Smg5	100	91.650	Mesocricetus_auratus
ENSRROG00000030035	SMG5	55	45.184	ENSMAUG00000000043	-	96	44.444	Mesocricetus_auratus
ENSRROG00000030035	SMG5	100	97.047	ENSMICG00000002257	SMG5	100	97.047	Microcebus_murinus
ENSRROG00000030035	SMG5	100	91.863	ENSMOCG00000016590	Smg5	100	91.275	Microtus_ochrogaster
ENSRROG00000030035	SMG5	99	59.216	ENSMMOG00000017199	smg5	99	59.821	Mola_mola
ENSRROG00000030035	SMG5	87	89.741	ENSMODG00000016901	SMG5	98	90.192	Monodelphis_domestica
ENSRROG00000030035	SMG5	97	34.891	ENSMODG00000004511	-	99	34.095	Monodelphis_domestica
ENSRROG00000030035	SMG5	93	37.317	ENSMODG00000004532	-	83	37.802	Monodelphis_domestica
ENSRROG00000030035	SMG5	78	37.783	ENSMODG00000010675	-	84	38.032	Monodelphis_domestica
ENSRROG00000030035	SMG5	80	38.876	ENSMODG00000004735	-	86	40.267	Monodelphis_domestica
ENSRROG00000030035	SMG5	99	60.676	ENSMALG00000010375	smg5	99	59.556	Monopterus_albus
ENSRROG00000030035	SMG5	100	92.338	MGP_CAROLIEiJ_G0025163	Smg5	100	98.883	Mus_caroli
ENSRROG00000030035	SMG5	100	92.534	ENSMUSG00000001415	Smg5	99	98.883	Mus_musculus
ENSRROG00000030035	SMG5	100	92.149	MGP_PahariEiJ_G0026606	Smg5	100	98.883	Mus_pahari
ENSRROG00000030035	SMG5	100	92.338	MGP_SPRETEiJ_G0026104	Smg5	100	98.883	Mus_spretus
ENSRROG00000030035	SMG5	94	92.842	ENSMPUG00000004546	SMG5	100	92.211	Mustela_putorius_furo
ENSRROG00000030035	SMG5	100	94.716	ENSMLUG00000008518	SMG5	100	93.836	Myotis_lucifugus
ENSRROG00000030035	SMG5	100	93.805	ENSNGAG00000020706	Smg5	100	93.510	Nannospalax_galili
ENSRROG00000030035	SMG5	98	44.578	ENSNGAG00000012101	-	98	44.786	Nannospalax_galili
ENSRROG00000030035	SMG5	97	62.937	ENSNBRG00000004332	smg5	98	64.193	Neolamprologus_brichardi
ENSRROG00000030035	SMG5	100	98.819	ENSNLEG00000012439	SMG5	100	98.819	Nomascus_leucogenys
ENSRROG00000030035	SMG5	100	87.709	ENSMEUG00000012834	SMG5	100	86.824	Notamacropus_eugenii
ENSRROG00000030035	SMG5	100	94.193	ENSOPRG00000009152	SMG5	100	94.193	Ochotona_princeps
ENSRROG00000030035	SMG5	100	95.571	ENSODEG00000012237	SMG5	100	95.571	Octodon_degus
ENSRROG00000030035	SMG5	50	59.415	ENSONIG00000008632	smg5	55	55.429	Oreochromis_niloticus
ENSRROG00000030035	SMG5	89	40.810	ENSOCUG00000023338	-	99	40.700	Oryctolagus_cuniculus
ENSRROG00000030035	SMG5	98	95.161	ENSOCUG00000012886	SMG5	100	95.161	Oryctolagus_cuniculus
ENSRROG00000030035	SMG5	99	64.522	ENSORLG00020013127	smg5	99	66.018	Oryzias_latipes_hni
ENSRROG00000030035	SMG5	99	64.237	ENSORLG00015019014	smg5	99	65.889	Oryzias_latipes_hsok
ENSRROG00000030035	SMG5	100	95.079	ENSOGAG00000004966	SMG5	100	95.079	Otolemur_garnettii
ENSRROG00000030035	SMG5	100	95.768	ENSOARG00000005778	SMG5	100	95.768	Ovis_aries
ENSRROG00000030035	SMG5	99	44.575	ENSOARG00000011963	-	99	43.665	Ovis_aries
ENSRROG00000030035	SMG5	100	98.622	ENSPPAG00000011996	SMG5	100	98.622	Pan_paniscus
ENSRROG00000030035	SMG5	98	93.750	ENSPPRG00000011901	SMG5	100	93.044	Panthera_pardus
ENSRROG00000030035	SMG5	99	85.558	ENSPTIG00000007892	SMG5	98	85.628	Panthera_tigris_altaica
ENSRROG00000030035	SMG5	100	98.819	ENSPTRG00000023925	SMG5	100	98.819	Pan_troglodytes
ENSRROG00000030035	SMG5	100	98.819	ENSPTRG00000049282	-	100	98.819	Pan_troglodytes
ENSRROG00000030035	SMG5	100	99.606	ENSPANG00000011201	SMG5	100	99.606	Papio_anubis
ENSRROG00000030035	SMG5	99	65.411	ENSPKIG00000009402	smg5	99	65.661	Paramormyrops_kingsleyae
ENSRROG00000030035	SMG5	98	80.437	ENSPSIG00000015198	SMG5	100	80.079	Pelodiscus_sinensis
ENSRROG00000030035	SMG5	99	60.422	ENSPMGG00000010465	smg5	99	60.813	Periophthalmus_magnuspinnatus
ENSRROG00000030035	SMG5	100	93.026	ENSPEMG00000001819	Smg5	100	92.633	Peromyscus_maniculatus_bairdii
ENSRROG00000030035	SMG5	56	46.060	ENSPEMG00000010022	-	95	44.845	Peromyscus_maniculatus_bairdii
ENSRROG00000030035	SMG5	99	49.517	ENSPMAG00000000410	smg5	100	49.477	Petromyzon_marinus
ENSRROG00000030035	SMG5	100	89.194	ENSPCIG00000018938	SMG5	100	89.587	Phascolarctos_cinereus
ENSRROG00000030035	SMG5	50	60.037	ENSPFOG00000010191	smg5	99	62.177	Poecilia_formosa
ENSRROG00000030035	SMG5	50	60.111	ENSPLAG00000009332	smg5	99	61.909	Poecilia_latipinna
ENSRROG00000030035	SMG5	99	65.418	ENSPMEG00000014105	smg5	99	65.226	Poecilia_mexicana
ENSRROG00000030035	SMG5	93	69.425	ENSPREG00000017713	smg5	99	61.820	Poecilia_reticulata
ENSRROG00000030035	SMG5	100	99.114	ENSPPYG00000000723	SMG5	100	99.114	Pongo_abelii
ENSRROG00000030035	SMG5	75	97.238	ENSPCAG00000008412	SMG5	81	97.238	Procavia_capensis
ENSRROG00000030035	SMG5	100	97.146	ENSPCOG00000004741	SMG5	100	97.146	Propithecus_coquereli
ENSRROG00000030035	SMG5	100	85.925	ENSPVAG00000016748	SMG5	100	85.925	Pteropus_vampyrus
ENSRROG00000030035	SMG5	93	63.883	ENSPNYG00000013397	smg5	99	60.939	Pundamilia_nyererei
ENSRROG00000030035	SMG5	100	92.534	ENSRNOG00000019590	Smg5	100	92.141	Rattus_norvegicus
ENSRROG00000030035	SMG5	100	99.902	ENSRBIG00000027428	SMG5	100	99.902	Rhinopithecus_bieti
ENSRROG00000030035	SMG5	100	97.933	ENSSBOG00000033339	SMG5	100	97.933	Saimiri_boliviensis_boliviensis
ENSRROG00000030035	SMG5	64	39.766	ENSSHAG00000000935	-	82	40.854	Sarcophilus_harrisii
ENSRROG00000030035	SMG5	98	88.789	ENSSHAG00000014163	SMG5	100	89.189	Sarcophilus_harrisii
ENSRROG00000030035	SMG5	88	40.420	ENSSHAG00000000561	-	87	40.420	Sarcophilus_harrisii
ENSRROG00000030035	SMG5	99	34.198	ENSSHAG00000009572	-	80	42.752	Sarcophilus_harrisii
ENSRROG00000030035	SMG5	99	66.148	ENSSFOG00015024175	smg5	99	66.407	Scleropages_formosus
ENSRROG00000030035	SMG5	99	60.727	ENSSMAG00000013059	smg5	99	62.299	Scophthalmus_maximus
ENSRROG00000030035	SMG5	50	60.145	ENSSDUG00000007122	smg5	92	77.336	Seriola_dumerili
ENSRROG00000030035	SMG5	99	60.298	ENSSLDG00000011418	smg5	92	78.066	Seriola_lalandi_dorsalis
ENSRROG00000030035	SMG5	90	80.916	ENSSARG00000012484	SMG5	100	80.916	Sorex_araneus
ENSRROG00000030035	SMG5	94	77.149	ENSSPUG00000002260	SMG5	100	75.859	Sphenodon_punctatus
ENSRROG00000030035	SMG5	91	77.049	ENSSPAG00000014266	smg5	99	65.255	Stegastes_partitus
ENSRROG00000030035	SMG5	99	74.778	ENSSSCG00000039308	-	100	74.975	Sus_scrofa
ENSRROG00000030035	SMG5	100	96.752	ENSSSCG00000006490	-	100	96.752	Sus_scrofa
ENSRROG00000030035	SMG5	99	80.218	ENSTGUG00000003748	-	100	79.980	Taeniopygia_guttata
ENSRROG00000030035	SMG5	99	63.680	ENSTRUG00000012580	smg5	99	64.479	Takifugu_rubripes
ENSRROG00000030035	SMG5	99	65.116	ENSTNIG00000010303	smg5	99	64.888	Tetraodon_nigroviridis
ENSRROG00000030035	SMG5	60	100.000	ENSTBEG00000002777	SMG5	60	100.000	Tupaia_belangeri
ENSRROG00000030035	SMG5	100	91.535	ENSTTRG00000001401	SMG5	100	91.535	Tursiops_truncatus
ENSRROG00000030035	SMG5	100	93.406	ENSUAMG00000013721	SMG5	100	92.815	Ursus_americanus
ENSRROG00000030035	SMG5	98	88.945	ENSUMAG00000018041	SMG5	97	88.342	Ursus_maritimus
ENSRROG00000030035	SMG5	98	86.579	ENSVPAG00000009446	SMG5	99	86.579	Vicugna_pacos
ENSRROG00000030035	SMG5	100	94.291	ENSVVUG00000005887	SMG5	100	93.701	Vulpes_vulpes
ENSRROG00000030035	SMG5	77	65.574	ENSXETG00000033791	SMG5	99	64.817	Xenopus_tropicalis
ENSRROG00000030035	SMG5	99	65.474	ENSXMAG00000013499	smg5	99	65.673	Xiphophorus_maculatus