EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSRROG00000030423 (Gene tree)
Gene ID: 104682020
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Rhinopithecus_roxellana
Status: putative
Strand: Plus strand
Length: 249664 bases
Position: chrKN299137.1:759376-1009039
Accession: 104682020
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRROP00000012242	EST1	PF10374.9	5.3e-15	1	1
ENSRROP00000012238	EST1	PF10374.9	5.5e-15	1	1
ENSRROP00000012240	EST1	PF10374.9	5.9e-15	1	1
ENSRROP00000012242	EST1_DNA_bind	PF10373.9	1.6e-60	1	1
ENSRROP00000012238	EST1_DNA_bind	PF10373.9	1.6e-60	1	1
ENSRROP00000012240	EST1_DNA_bind	PF10373.9	2e-36	1	2
ENSRROP00000012240	EST1_DNA_bind	PF10373.9	2e-36	2	2
ENSRROP00000012247	EST1_DNA_bind	PF10373.9	5.2e-18	1	1
ENSRROP00000012247	PIN_4	PF13638.6	1.4e-21	1	1
ENSRROP00000012240	PIN_4	PF13638.6	7.3e-21	1	1
ENSRROP00000012242	PIN_4	PF13638.6	7.3e-21	1	1
ENSRROP00000012238	PIN_4	PF13638.6	7.6e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRROT00000036355	SMG6-201	6497	XM_010388492	ENSRROP00000012238	1419 (aa)	XP_010386794	A0A2K6P6T5
ENSRROT00000036357	SMG6-202	4770	-	ENSRROP00000012240	1382 (aa)	-	A0A2K6P6S6
ENSRROT00000036359	SMG6-203	6129	XM_010388493	ENSRROP00000012242	1388 (aa)	XP_010386795	A0A2K6P6S3
ENSRROT00000036364	SMG6-204	3240	XM_010388494	ENSRROP00000012247	511 (aa)	XP_010386796	A0A2K6P6S7

Gene Model

Click here to download ENSRROG00000030423's gene model file

Pathways

Pathway ID	Pathway Name	Source
rro03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRROG00000030423's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRROG00000030423	SMG6	100	98.826	ENSG00000070366	SMG6	100	98.826	Homo_sapiens
ENSRROG00000030423	SMG6	100	58.501	ENSAPOG00000019448	smg6	74	55.070	Acanthochromis_polyacanthus
ENSRROG00000030423	SMG6	100	96.477	ENSAMEG00000007632	SMG6	100	93.235	Ailuropoda_melanoleuca
ENSRROG00000030423	SMG6	100	60.714	ENSACIG00000012997	smg6	98	49.574	Amphilophus_citrinellus
ENSRROG00000030423	SMG6	100	58.135	ENSAOCG00000002630	smg6	74	55.234	Amphiprion_ocellaris
ENSRROG00000030423	SMG6	100	58.135	ENSAPEG00000019101	smg6	74	55.391	Amphiprion_percula
ENSRROG00000030423	SMG6	100	59.049	ENSATEG00000006483	smg6	73	54.977	Anabas_testudineus
ENSRROG00000030423	SMG6	87	57.402	ENSACAG00000011783	SMG6	99	58.314	Anolis_carolinensis
ENSRROG00000030423	SMG6	100	97.847	ENSANAG00000035760	SMG6	100	96.124	Aotus_nancymaae
ENSRROG00000030423	SMG6	100	59.007	ENSACLG00000005288	smg6	86	53.218	Astatotilapia_calliptera
ENSRROG00000030423	SMG6	100	62.786	ENSAMXG00000017326	smg6	99	50.864	Astyanax_mexicanus
ENSRROG00000030423	SMG6	100	96.477	ENSBTAG00000000267	SMG6	100	92.812	Bos_taurus
ENSRROG00000030423	SMG6	100	97.652	ENSCJAG00000001820	SMG6	100	95.560	Callithrix_jacchus
ENSRROG00000030423	SMG6	100	96.282	ENSCAFG00000019260	SMG6	100	93.446	Canis_familiaris
ENSRROG00000030423	SMG6	100	96.282	ENSCAFG00020009770	SMG6	100	93.446	Canis_lupus_dingo
ENSRROG00000030423	SMG6	100	96.869	ENSCHIG00000021998	SMG6	100	92.671	Capra_hircus
ENSRROG00000030423	SMG6	100	96.673	ENSTSYG00000003406	SMG6	100	96.673	Carlito_syrichta
ENSRROG00000030423	SMG6	100	77.410	ENSCAPG00000016197	SMG6	99	82.201	Cavia_aperea
ENSRROG00000030423	SMG6	100	95.890	ENSCPOG00000014878	SMG6	100	90.915	Cavia_porcellus
ENSRROG00000030423	SMG6	100	97.847	ENSCCAG00000035801	SMG6	100	96.054	Cebus_capucinus
ENSRROG00000030423	SMG6	100	99.022	ENSCATG00000031956	SMG6	100	98.309	Cercocebus_atys
ENSRROG00000030423	SMG6	100	96.282	ENSCLAG00000006748	SMG6	100	92.459	Chinchilla_lanigera
ENSRROG00000030423	SMG6	100	99.413	ENSCSAG00000013800	SMG6	100	98.732	Chlorocebus_sabaeus
ENSRROG00000030423	SMG6	57	98.507	ENSCHOG00000005024	-	73	98.507	Choloepus_hoffmanni
ENSRROG00000030423	SMG6	100	81.800	ENSCPBG00000020369	SMG6	100	72.349	Chrysemys_picta_bellii
ENSRROG00000030423	SMG6	99	34.556	ENSCING00000010099	-	99	34.990	Ciona_intestinalis
ENSRROG00000030423	SMG6	54	37.809	ENSCSAVG00000007638	-	99	38.078	Ciona_savignyi
ENSRROG00000030423	SMG6	100	99.609	ENSCANG00000031764	SMG6	100	99.609	Colobus_angolensis_palliatus
ENSRROG00000030423	SMG6	56	88.447	ENSCGRG00001019595	Smg6	98	88.235	Cricetulus_griseus_chok1gshd
ENSRROG00000030423	SMG6	100	84.942	ENSCGRG00000007782	Smg6	100	85.086	Cricetulus_griseus_crigri
ENSRROG00000030423	SMG6	100	61.017	ENSCSEG00000012757	smg6	82	53.434	Cynoglossus_semilaevis
ENSRROG00000030423	SMG6	100	57.895	ENSCVAG00000012789	smg6	74	53.774	Cyprinodon_variegatus
ENSRROG00000030423	SMG6	100	61.654	ENSDARG00000100481	smg6	91	56.511	Danio_rerio
ENSRROG00000030423	SMG6	100	96.282	ENSDNOG00000048283	SMG6	100	92.882	Dasypus_novemcinctus
ENSRROG00000030423	SMG6	100	97.260	ENSDORG00000016614	Smg6	94	97.297	Dipodomys_ordii
ENSRROG00000030423	SMG6	93	97.619	ENSETEG00000016790	SMG6	93	97.619	Echinops_telfairi
ENSRROG00000030423	SMG6	99	55.493	ENSEBUG00000005059	smg6	66	49.854	Eptatretus_burgeri
ENSRROG00000030423	SMG6	99	97.053	ENSEASG00005009318	SMG6	99	93.790	Equus_asinus_asinus
ENSRROG00000030423	SMG6	99	96.857	ENSECAG00000006519	SMG6	99	93.507	Equus_caballus
ENSRROG00000030423	SMG6	99	84.510	ENSEEUG00000003493	SMG6	100	82.100	Erinaceus_europaeus
ENSRROG00000030423	SMG6	100	62.030	ENSELUG00000005934	smg6	69	55.471	Esox_lucius
ENSRROG00000030423	SMG6	100	96.869	ENSFCAG00000028817	SMG6	100	94.151	Felis_catus
ENSRROG00000030423	SMG6	100	82.975	ENSFALG00000006538	SMG6	100	71.673	Ficedula_albicollis
ENSRROG00000030423	SMG6	100	96.086	ENSFDAG00000015106	SMG6	100	92.319	Fukomys_damarensis
ENSRROG00000030423	SMG6	100	56.673	ENSFHEG00000013282	smg6	75	53.427	Fundulus_heteroclitus
ENSRROG00000030423	SMG6	100	52.852	ENSGMOG00000019077	smg6	68	69.159	Gadus_morhua
ENSRROG00000030423	SMG6	100	83.008	ENSGALG00000003108	SMG6	98	71.686	Gallus_gallus
ENSRROG00000030423	SMG6	100	57.664	ENSGAFG00000000379	smg6	74	54.339	Gambusia_affinis
ENSRROG00000030423	SMG6	100	60.038	ENSGACG00000020521	smg6	100	54.424	Gasterosteus_aculeatus
ENSRROG00000030423	SMG6	100	82.192	ENSGAGG00000025617	SMG6	100	71.986	Gopherus_agassizii
ENSRROG00000030423	SMG6	100	99.022	ENSGGOG00000017156	SMG6	100	98.168	Gorilla_gorilla
ENSRROG00000030423	SMG6	100	59.007	ENSHBUG00000021311	smg6	78	54.322	Haplochromis_burtoni
ENSRROG00000030423	SMG6	100	96.282	ENSHGLG00000012882	SMG6	100	91.907	Heterocephalus_glaber_female
ENSRROG00000030423	SMG6	100	96.282	ENSHGLG00100017815	SMG6	100	91.977	Heterocephalus_glaber_male
ENSRROG00000030423	SMG6	100	59.510	ENSHCOG00000008761	smg6	83	59.104	Hippocampus_comes
ENSRROG00000030423	SMG6	100	62.239	ENSIPUG00000012493	smg6	75	54.659	Ictalurus_punctatus
ENSRROG00000030423	SMG6	100	97.456	ENSSTOG00000028127	SMG6	100	93.798	Ictidomys_tridecemlineatus
ENSRROG00000030423	SMG6	79	88.849	ENSJJAG00000015367	Smg6	95	86.915	Jaculus_jaculus
ENSRROG00000030423	SMG6	100	59.636	ENSKMAG00000000279	smg6	91	48.995	Kryptolebias_marmoratus
ENSRROG00000030423	SMG6	100	56.752	ENSLBEG00000002184	smg6	76	53.113	Labrus_bergylta
ENSRROG00000030423	SMG6	91	80.215	ENSLACG00000003276	SMG6	100	80.215	Latimeria_chalumnae
ENSRROG00000030423	SMG6	56	59.191	ENSLACG00000000806	-	98	59.634	Latimeria_chalumnae
ENSRROG00000030423	SMG6	100	68.015	ENSLOCG00000006448	smg6	100	55.232	Lepisosteus_oculatus
ENSRROG00000030423	SMG6	100	96.477	ENSLAFG00000001261	SMG6	100	93.023	Loxodonta_africana
ENSRROG00000030423	SMG6	100	99.609	ENSMFAG00000003394	SMG6	100	98.802	Macaca_fascicularis
ENSRROG00000030423	SMG6	100	99.609	ENSMMUG00000023161	SMG6	100	98.732	Macaca_mulatta
ENSRROG00000030423	SMG6	100	99.609	ENSMNEG00000044592	SMG6	100	93.996	Macaca_nemestrina
ENSRROG00000030423	SMG6	100	99.609	ENSMLEG00000029353	SMG6	99	97.579	Mandrillus_leucophaeus
ENSRROG00000030423	SMG6	100	59.347	ENSMAMG00000020119	smg6	79	56.191	Mastacembelus_armatus
ENSRROG00000030423	SMG6	100	59.007	ENSMZEG00005024736	smg6	80	53.450	Maylandia_zebra
ENSRROG00000030423	SMG6	73	67.053	ENSMGAG00000005401	-	99	66.320	Meleagris_gallopavo
ENSRROG00000030423	SMG6	72	84.741	ENSMGAG00000017200	-	100	84.741	Meleagris_gallopavo
ENSRROG00000030423	SMG6	100	97.260	ENSMICG00000012913	SMG6	100	95.208	Microcebus_murinus
ENSRROG00000030423	SMG6	100	60.837	ENSMMOG00000010883	smg6	100	48.095	Mola_mola
ENSRROG00000030423	SMG6	99	41.683	ENSMODG00000024410	-	99	41.683	Monodelphis_domestica
ENSRROG00000030423	SMG6	99	41.096	ENSMODG00000024395	-	98	52.361	Monodelphis_domestica
ENSRROG00000030423	SMG6	100	94.716	ENSMODG00000010622	SMG6	100	85.935	Monodelphis_domestica
ENSRROG00000030423	SMG6	99	41.487	ENSMODG00000024460	-	99	41.879	Monodelphis_domestica
ENSRROG00000030423	SMG6	99	41.683	ENSMODG00000024463	-	99	42.074	Monodelphis_domestica
ENSRROG00000030423	SMG6	100	58.029	ENSMALG00000001106	smg6	73	55.280	Monopterus_albus
ENSRROG00000030423	SMG6	100	96.869	MGP_CAROLIEiJ_G0016729	Smg6	100	91.755	Mus_caroli
ENSRROG00000030423	SMG6	100	96.869	ENSMUSG00000038290	Smg6	100	91.543	Mus_musculus
ENSRROG00000030423	SMG6	100	96.673	MGP_PahariEiJ_G0017866	Smg6	100	91.121	Mus_pahari
ENSRROG00000030423	SMG6	100	96.869	MGP_SPRETEiJ_G0017572	Smg6	100	91.543	Mus_spretus
ENSRROG00000030423	SMG6	100	96.086	ENSMPUG00000013046	SMG6	100	93.235	Mustela_putorius_furo
ENSRROG00000030423	SMG6	100	96.869	ENSMLUG00000005739	SMG6	100	92.812	Myotis_lucifugus
ENSRROG00000030423	SMG6	100	95.303	ENSNGAG00000007287	Smg6	100	90.497	Nannospalax_galili
ENSRROG00000030423	SMG6	100	58.955	ENSNBRG00000009511	smg6	100	49.142	Neolamprologus_brichardi
ENSRROG00000030423	SMG6	100	99.022	ENSNLEG00000017171	SMG6	100	99.022	Nomascus_leucogenys
ENSRROG00000030423	SMG6	100	94.129	ENSMEUG00000015804	SMG6	100	82.112	Notamacropus_eugenii
ENSRROG00000030423	SMG6	92	83.547	ENSOPRG00000000579	SMG6	85	96.842	Ochotona_princeps
ENSRROG00000030423	SMG6	100	95.898	ENSODEG00000008038	SMG6	100	86.753	Octodon_degus
ENSRROG00000030423	SMG6	100	59.191	ENSONIG00000005594	smg6	100	51.971	Oreochromis_niloticus
ENSRROG00000030423	SMG6	59	84.667	ENSOANG00000030166	-	90	84.667	Ornithorhynchus_anatinus
ENSRROG00000030423	SMG6	100	96.680	ENSOCUG00000013018	SMG6	100	93.174	Oryctolagus_cuniculus
ENSRROG00000030423	SMG6	100	57.455	ENSORLG00000003317	smg6	74	54.945	Oryzias_latipes
ENSRROG00000030423	SMG6	100	57.587	ENSORLG00020015343	smg6	74	54.638	Oryzias_latipes_hni
ENSRROG00000030423	SMG6	100	57.091	ENSORLG00015020454	smg6	74	54.902	Oryzias_latipes_hsok
ENSRROG00000030423	SMG6	100	57.559	ENSOMEG00000010838	smg6	75	54.137	Oryzias_melastigma
ENSRROG00000030423	SMG6	100	96.869	ENSOGAG00000004483	SMG6	100	94.577	Otolemur_garnettii
ENSRROG00000030423	SMG6	100	96.673	ENSOARG00000015076	SMG6	100	92.419	Ovis_aries
ENSRROG00000030423	SMG6	100	98.826	ENSPPAG00000043296	SMG6	100	97.886	Pan_paniscus
ENSRROG00000030423	SMG6	100	96.869	ENSPPRG00000014581	SMG6	100	94.292	Panthera_pardus
ENSRROG00000030423	SMG6	100	96.869	ENSPTIG00000008925	SMG6	100	96.869	Panthera_tigris_altaica
ENSRROG00000030423	SMG6	100	98.826	ENSPTRG00000008544	SMG6	100	98.826	Pan_troglodytes
ENSRROG00000030423	SMG6	100	99.609	ENSPANG00000024588	SMG6	100	98.661	Papio_anubis
ENSRROG00000030423	SMG6	90	70.501	ENSPSIG00000006660	SMG6	96	70.625	Pelodiscus_sinensis
ENSRROG00000030423	SMG6	100	60.000	ENSPMGG00000000844	smg6	100	60.870	Periophthalmus_magnuspinnatus
ENSRROG00000030423	SMG6	100	96.673	ENSPEMG00000020707	Smg6	100	92.389	Peromyscus_maniculatus_bairdii
ENSRROG00000030423	SMG6	100	60.149	ENSPFOG00000012035	smg6	100	51.408	Poecilia_formosa
ENSRROG00000030423	SMG6	100	57.664	ENSPLAG00000017660	smg6	74	54.203	Poecilia_latipinna
ENSRROG00000030423	SMG6	100	58.076	ENSPMEG00000000258	smg6	74	54.517	Poecilia_mexicana
ENSRROG00000030423	SMG6	100	57.664	ENSPREG00000010066	smg6	74	54.631	Poecilia_reticulata
ENSRROG00000030423	SMG6	100	92.405	ENSPPYG00000007790	SMG6	100	92.405	Pongo_abelii
ENSRROG00000030423	SMG6	100	88.372	ENSPCAG00000000552	SMG6	100	88.372	Procavia_capensis
ENSRROG00000030423	SMG6	100	97.260	ENSPCOG00000020925	SMG6	100	94.856	Propithecus_coquereli
ENSRROG00000030423	SMG6	100	96.282	ENSPVAG00000002159	SMG6	86	100.000	Pteropus_vampyrus
ENSRROG00000030423	SMG6	100	61.686	ENSPNYG00000024151	smg6	86	55.273	Pundamilia_nyererei
ENSRROG00000030423	SMG6	100	62.942	ENSPNAG00000015480	smg6	87	63.102	Pygocentrus_nattereri
ENSRROG00000030423	SMG6	100	96.673	ENSRNOG00000003041	Smg6	100	91.896	Rattus_norvegicus
ENSRROG00000030423	SMG6	100	100.000	ENSRBIG00000024746	SMG6	100	99.930	Rhinopithecus_bieti
ENSRROG00000030423	SMG6	100	97.847	ENSSBOG00000022518	SMG6	100	94.362	Saimiri_boliviensis_boliviensis
ENSRROG00000030423	SMG6	97	40.438	ENSSHAG00000000380	-	99	39.802	Sarcophilus_harrisii
ENSRROG00000030423	SMG6	100	93.542	ENSSHAG00000010045	SMG6	98	85.222	Sarcophilus_harrisii
ENSRROG00000030423	SMG6	100	63.178	ENSSFOG00015005436	smg6	73	55.800	Scleropages_formosus
ENSRROG00000030423	SMG6	100	57.713	ENSSMAG00000019777	smg6	73	54.961	Scophthalmus_maximus
ENSRROG00000030423	SMG6	100	58.470	ENSSDUG00000016412	smg6	74	54.957	Seriola_dumerili
ENSRROG00000030423	SMG6	91	56.461	ENSSLDG00000020747	smg6	77	54.008	Seriola_lalandi_dorsalis
ENSRROG00000030423	SMG6	100	81.359	ENSSPUG00000007152	SMG6	99	70.334	Sphenodon_punctatus
ENSRROG00000030423	SMG6	100	58.425	ENSSPAG00000015633	smg6	74	55.024	Stegastes_partitus
ENSRROG00000030423	SMG6	100	96.477	ENSSSCG00000017826	SMG6	100	92.465	Sus_scrofa
ENSRROG00000030423	SMG6	100	83.757	ENSTGUG00000005836	SMG6	100	72.090	Taeniopygia_guttata
ENSRROG00000030423	SMG6	100	59.023	ENSTRUG00000000358	smg6	81	55.422	Takifugu_rubripes
ENSRROG00000030423	SMG6	100	60.223	ENSTNIG00000016164	smg6	100	50.099	Tetraodon_nigroviridis
ENSRROG00000030423	SMG6	100	89.288	ENSTBEG00000011424	SMG6	100	89.288	Tupaia_belangeri
ENSRROG00000030423	SMG6	100	89.432	ENSTTRG00000001175	SMG6	91	91.515	Tursiops_truncatus
ENSRROG00000030423	SMG6	100	96.109	ENSUAMG00000025152	SMG6	100	92.939	Ursus_americanus
ENSRROG00000030423	SMG6	100	96.673	ENSUMAG00000009306	SMG6	100	93.791	Ursus_maritimus
ENSRROG00000030423	SMG6	85	92.593	ENSVPAG00000000225	SMG6	88	92.593	Vicugna_pacos
ENSRROG00000030423	SMG6	100	96.282	ENSVVUG00000021727	SMG6	100	93.305	Vulpes_vulpes
ENSRROG00000030423	SMG6	100	68.665	ENSXETG00000023799	SMG6	100	59.296	Xenopus_tropicalis
ENSRROG00000030423	SMG6	100	60.421	ENSXCOG00000009867	smg6	74	55.060	Xiphophorus_couchianus
ENSRROG00000030423	SMG6	100	57.847	ENSXMAG00000010321	smg6	74	54.418	Xiphophorus_maculatus