EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSRROG00000031057 (Gene tree)
Gene ID: 104678576
Gene Symbol: -
Alias: -
Full Name: small nuclear ribonucleoprotein polypeptide F
Gene Type: protein_coding
Species: Rhinopithecus_roxellana
Status: putative
Strand: Minus strand
Length: 44001 bases
Position: chrKN298724.1:1974679-2018679
Accession: 104678576
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRROP00000013650	LSM	PF01423.22	4.2e-21	1	1
ENSRROP00000013649	LSM	PF01423.22	1.2e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRROT00000037775	-	434	XM_010383898	ENSRROP00000013650	86 (aa)	XP_010382200	A0A2K6PAV0
ENSRROT00000037774	-	384	-	ENSRROP00000013649	127 (aa)	-	A0A2K6PB00

Gene Model

Click here to download ENSRROG00000031057's gene model file

Pathways

Pathway ID	Pathway Name	Source
rro03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRROG00000031057's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRROG00000031057	-	100	96.512	ENSRROG00000021975	-	100	96.512
ENSRROG00000031057	-	52	42.424	ENSRROG00000029556	-	51	42.424
ENSRROG00000031057	-	77	51.515	ENSRROG00000024868	LSM6	83	51.515

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRROG00000031057	-	50	97.674	ENSCHIG00000017139	-	87	89.831	Capra_hircus
ENSRROG00000031057	-	100	100.000	ENSCATG00000003132	-	100	100.000	Cercocebus_atys
ENSRROG00000031057	-	50	100.000	ENSCPBG00000001948	-	94	91.837	Chrysemys_picta_bellii
ENSRROG00000031057	-	100	100.000	ENSCANG00000006758	-	100	100.000	Colobus_angolensis_palliatus
ENSRROG00000031057	-	91	58.974	ENSFCAG00000037511	-	87	61.644	Felis_catus
ENSRROG00000031057	-	51	90.909	ENSFCAG00000032773	-	70	90.909	Felis_catus
ENSRROG00000031057	-	57	87.755	ENSGAGG00000014834	-	75	97.727	Gopherus_agassizii
ENSRROG00000031057	-	100	100.000	ENSMFAG00000035517	-	100	100.000	Macaca_fascicularis
ENSRROG00000031057	-	100	100.000	ENSMMUG00000009302	-	100	100.000	Macaca_mulatta
ENSRROG00000031057	-	100	100.000	ENSMNEG00000030762	-	100	100.000	Macaca_nemestrina
ENSRROG00000031057	-	100	100.000	ENSMLEG00000033558	-	100	100.000	Mandrillus_leucophaeus
ENSRROG00000031057	-	100	100.000	ENSNLEG00000005835	-	100	100.000	Nomascus_leucogenys
ENSRROG00000031057	-	50	97.674	ENSOGAG00000014320	-	100	96.226	Otolemur_garnettii
ENSRROG00000031057	-	100	100.000	ENSPPAG00000003072	-	100	100.000	Pan_paniscus
ENSRROG00000031057	-	73	76.190	ENSPPRG00000020147	-	100	76.190	Panthera_pardus
ENSRROG00000031057	-	100	100.000	ENSPTRG00000005317	-	100	94.488	Pan_troglodytes
ENSRROG00000031057	-	100	98.425	ENSPANG00000014632	-	100	98.425	Papio_anubis
ENSRROG00000031057	-	100	100.000	ENSPCIG00000017205	-	100	100.000	Phascolarctos_cinereus
ENSRROG00000031057	-	53	93.478	ENSPFOG00000020883	-	100	93.478	Poecilia_formosa
ENSRROG00000031057	-	100	100.000	ENSRBIG00000028811	-	100	100.000	Rhinopithecus_bieti
ENSRROG00000031057	-	64	78.182	ENSVVUG00000003155	-	73	78.182	Vulpes_vulpes