EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSRROG00000033355 (Gene tree)
Gene ID
104654873
Gene Symbol
PABPC4
Alias
APP-1|iPABP
Full Name
poly(A) binding protein cytoplasmic 4
Gene Type
protein_coding
Species
Rhinopithecus_roxellana
Status
putative
Strand
Minus strand
Length
16519 bases
Position
chrKN299537.1:41767-58285
Accession
104654873
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRROP00000018653PABPPF00658.182.5e-3111
ENSRROP00000018652PABPPF00658.182.9e-3111
ENSRROP00000018653RRM_5PF13893.68.6e-0911
ENSRROP00000018652RRM_5PF13893.61.1e-0811
ENSRROP00000018653RRM_1PF00076.221.1e-9114
ENSRROP00000018653RRM_1PF00076.221.1e-9124
ENSRROP00000018653RRM_1PF00076.221.1e-9134
ENSRROP00000018653RRM_1PF00076.221.1e-9144
ENSRROP00000018652RRM_1PF00076.221.4e-9114
ENSRROP00000018652RRM_1PF00076.221.4e-9124
ENSRROP00000018652RRM_1PF00076.221.4e-9134
ENSRROP00000018652RRM_1PF00076.221.4e-9144
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRROT00000042814PABPC4-2022780XM_010354187ENSRROP00000018653631 (aa)XP_010352489A0A2K6PQ44
ENSRROT00000042813PABPC4-2012867XM_010354184ENSRROP00000018652660 (aa)XP_010352486A0A2K6PQ38
Gene Model
Click here to download ENSRROG00000033355's gene model file
Pathways
Pathway IDPathway NameSource
rro03013RNA transportKEGG
rro03015mRNA surveillance pathwayKEGG
rro03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSRROG00000033355's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSRROG00000033355PABPC49959.874ENSRROG00000028723-9959.874
ENSRROG00000033355PABPC45431.481ENSRROG00000002558HNRNPA05032.450
ENSRROG00000033355PABPC49866.667ENSRROG00000044498PABPC1L9967.203
ENSRROG00000033355PABPC45876.650ENSRROG00000017404-9976.650
ENSRROG00000033355PABPC49979.717ENSRROG00000042796-9990.000
ENSRROG00000033355PABPC46172.554ENSRROG00000020367PABPC4L9972.554
ENSRROG00000033355PABPC46755.116ENSRROG00000029758-9355.116
ENSRROG00000033355PABPC45730.189ENSRROG00000032699TIA18530.189
ENSRROG00000033355PABPC45731.250ENSRROG00000043377TIAL19631.250
ENSRROG00000033355PABPC46030.605ENSRROG00000037769ELAVL19430.605
ENSRROG00000033355PABPC49974.168ENSRROG00000036871PABPC39874.168
ENSRROG00000033355PABPC49974.411ENSRROG00000032349-9974.254
ENSRROG00000033355PABPC45931.579ENSRROG00000041782ELAVL28934.940
ENSRROG00000033355PABPC45830.952ENSRROG00000044786ELAVL48930.921
ENSRROG00000033355PABPC48176.768ENSRROG00000044781-9776.768
ENSRROG00000033355PABPC46067.135ENSRROG00000036708PABPC59666.942
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRROG00000033355PABPC410099.848ENSG00000090621PABPC4100100.000Homo_sapiens
ENSRROG00000033355PABPC49983.360ENSAPOG00000001161pabpc410082.453Acanthochromis_polyacanthus
ENSRROG00000033355PABPC410099.091ENSAMEG00000011535-10099.091Ailuropoda_melanoleuca
ENSRROG00000033355PABPC49857.717ENSAMEG00000015083-9957.395Ailuropoda_melanoleuca
ENSRROG00000033355PABPC410083.594ENSACIG00000023343pabpc410084.219Amphilophus_citrinellus
ENSRROG00000033355PABPC49983.518ENSAOCG00000021529pabpc410090.807Amphiprion_ocellaris
ENSRROG00000033355PABPC49983.518ENSAPEG00000019196pabpc410083.750Amphiprion_percula
ENSRROG00000033355PABPC49982.622ENSATEG00000007402pabpc410082.426Anabas_testudineus
ENSRROG00000033355PABPC49991.429ENSAPLG00000009729-10091.429Anas_platyrhynchos
ENSRROG00000033355PABPC49990.161ENSACAG00000002544PABPC410090.161Anolis_carolinensis
ENSRROG00000033355PABPC410099.697ENSANAG00000025079PABPC410099.697Aotus_nancymaae
ENSRROG00000033355PABPC410083.125ENSACLG00000019558pabpc410083.204Astatotilapia_calliptera
ENSRROG00000033355PABPC49978.922ENSAMXG00000018779pabpc49979.556Astyanax_mexicanus
ENSRROG00000033355PABPC410096.672ENSBTAG00000017125PABPC410096.672Bos_taurus
ENSRROG00000033355PABPC45786.826ENSBTAG00000048536-9886.826Bos_taurus
ENSRROG00000033355PABPC410099.545ENSCJAG00000002512-10099.545Callithrix_jacchus
ENSRROG00000033355PABPC47790.164ENSCJAG00000045953-9290.123Callithrix_jacchus
ENSRROG00000033355PABPC410099.366ENSCAFG00000003081PABPC410099.366Canis_familiaris
ENSRROG00000033355PABPC410099.242ENSCAFG00020004161PABPC410099.242Canis_lupus_dingo
ENSRROG00000033355PABPC410099.091ENSCHIG00000019398-10099.091Capra_hircus
ENSRROG00000033355PABPC410076.515ENSCHIG00000023385-10076.515Capra_hircus
ENSRROG00000033355PABPC410099.545ENSTSYG00000006532PABPC410099.545Carlito_syrichta
ENSRROG00000033355PABPC49999.544ENSCAPG00000015984PABPC410099.544Cavia_aperea
ENSRROG00000033355PABPC410099.545ENSCPOG00000009552PABPC410099.545Cavia_porcellus
ENSRROG00000033355PABPC410099.697ENSCCAG00000037306PABPC410099.697Cebus_capucinus
ENSRROG00000033355PABPC4100100.000ENSCATG00000042164PABPC4100100.000Cercocebus_atys
ENSRROG00000033355PABPC410099.242ENSCLAG00000011899PABPC410099.242Chinchilla_lanigera
ENSRROG00000033355PABPC4100100.000ENSCSAG00000001135PABPC4100100.000Chlorocebus_sabaeus
ENSRROG00000033355PABPC48697.625ENSCHOG00000005327PABPC48197.625Choloepus_hoffmanni
ENSRROG00000033355PABPC49991.746ENSCPBG00000001038PABPC410091.746Chrysemys_picta_bellii
ENSRROG00000033355PABPC49999.846ENSCANG00000034177PABPC410099.846Colobus_angolensis_palliatus
ENSRROG00000033355PABPC410097.440ENSCGRG00001018166Pabpc410097.440Cricetulus_griseus_chok1gshd
ENSRROG00000033355PABPC49994.962ENSCGRG00000009777Pabpc410094.962Cricetulus_griseus_crigri
ENSRROG00000033355PABPC410082.344ENSCSEG00000000130pabpc410082.426Cynoglossus_semilaevis
ENSRROG00000033355PABPC49983.625ENSCVAG00000019246pabpc410083.861Cyprinodon_variegatus
ENSRROG00000033355PABPC49984.921ENSDARG00000059259pabpc410085.691Danio_rerio
ENSRROG00000033355PABPC49999.643ENSDNOG00000018444-10099.643Dasypus_novemcinctus
ENSRROG00000033355PABPC410097.121ENSDORG00000011581Pabpc410097.121Dipodomys_ordii
ENSRROG00000033355PABPC48665.370ENSETEG00000009172-9965.385Echinops_telfairi
ENSRROG00000033355PABPC4100100.000ENSETEG00000018453-84100.000Echinops_telfairi
ENSRROG00000033355PABPC49776.898ENSEBUG00000013782pabpc49976.108Eptatretus_burgeri
ENSRROG00000033355PABPC49976.582ENSEBUG00000000992pabpc49980.346Eptatretus_burgeri
ENSRROG00000033355PABPC410099.697ENSEASG00005014119PABPC410099.697Equus_asinus_asinus
ENSRROG00000033355PABPC410099.697ENSECAG00000009396PABPC410099.697Equus_caballus
ENSRROG00000033355PABPC410096.364ENSEEUG00000002962PABPC410096.364Erinaceus_europaeus
ENSRROG00000033355PABPC49983.599ENSELUG00000003195pabpc49884.177Esox_lucius
ENSRROG00000033355PABPC410099.394ENSFCAG00000015254-10099.394Felis_catus
ENSRROG00000033355PABPC49990.952ENSFALG00000000543PABPC410090.952Ficedula_albicollis
ENSRROG00000033355PABPC49067.490ENSFDAG00000010581-10063.361Fukomys_damarensis
ENSRROG00000033355PABPC410099.545ENSFDAG00000020016-10099.545Fukomys_damarensis
ENSRROG00000033355PABPC410083.412ENSFHEG00000007548pabpc49688.578Fundulus_heteroclitus
ENSRROG00000033355PABPC49982.965ENSGMOG00000019025pabpc49983.596Gadus_morhua
ENSRROG00000033355PABPC49991.746ENSGALG00000003800PABPC410091.746Gallus_gallus
ENSRROG00000033355PABPC49990.566ENSGAFG00000018195pabpc49895.556Gambusia_affinis
ENSRROG00000033355PABPC410081.591ENSGACG00000007179pabpc410082.215Gasterosteus_aculeatus
ENSRROG00000033355PABPC49991.587ENSGAGG00000001888PABPC410091.587Gopherus_agassizii
ENSRROG00000033355PABPC410099.848ENSGGOG00000004002PABPC410099.848Gorilla_gorilla
ENSRROG00000033355PABPC410083.281ENSHBUG00000020206pabpc410083.359Haplochromis_burtoni
ENSRROG00000033355PABPC410099.697ENSHGLG00000011162PABPC410099.697Heterocephalus_glaber_female
ENSRROG00000033355PABPC410099.683ENSHGLG00100001580PABPC410099.683Heterocephalus_glaber_male
ENSRROG00000033355PABPC410082.316ENSHCOG00000012694pabpc410082.942Hippocampus_comes
ENSRROG00000033355PABPC49883.146ENSIPUG00000016620pabpc49983.176Ictalurus_punctatus
ENSRROG00000033355PABPC410097.121ENSSTOG00000010416PABPC410097.121Ictidomys_tridecemlineatus
ENSRROG00000033355PABPC410094.848ENSJJAG00000007781Pabpc410094.848Jaculus_jaculus
ENSRROG00000033355PABPC49982.677ENSKMAG00000013597pabpc49982.188Kryptolebias_marmoratus
ENSRROG00000033355PABPC410082.582ENSLBEG00000013654pabpc410082.143Labrus_bergylta
ENSRROG00000033355PABPC49988.170ENSLACG00000011907PABPC410088.170Latimeria_chalumnae
ENSRROG00000033355PABPC49985.512ENSLOCG00000001877pabpc49986.299Lepisosteus_oculatus
ENSRROG00000033355PABPC410099.242ENSLAFG00000000151PABPC410099.242Loxodonta_africana
ENSRROG00000033355PABPC4100100.000ENSMFAG00000041481PABPC4100100.000Macaca_fascicularis
ENSRROG00000033355PABPC4100100.000ENSMMUG00000007497PABPC4100100.000Macaca_mulatta
ENSRROG00000033355PABPC410099.848ENSMNEG00000043054PABPC410099.848Macaca_nemestrina
ENSRROG00000033355PABPC4100100.000ENSMLEG00000040716PABPC4100100.000Mandrillus_leucophaeus
ENSRROG00000033355PABPC49983.201ENSMAMG00000010025pabpc49982.059Mastacembelus_armatus
ENSRROG00000033355PABPC410082.969ENSMZEG00005006141pabpc410083.048Maylandia_zebra
ENSRROG00000033355PABPC49987.905ENSMGAG00000005408PABPC410087.905Meleagris_gallopavo
ENSRROG00000033355PABPC47795.413ENSMAUG00000019763-8495.413Mesocricetus_auratus
ENSRROG00000033355PABPC45781.287ENSMAUG00000004089-9281.287Mesocricetus_auratus
ENSRROG00000033355PABPC47289.423ENSMAUG00000001295-9789.423Mesocricetus_auratus
ENSRROG00000033355PABPC49984.725ENSMICG00000036729-10085.435Microcebus_murinus
ENSRROG00000033355PABPC48996.619ENSMICG00000016633-10096.619Microcebus_murinus
ENSRROG00000033355PABPC410097.892ENSMOCG00000006763Pabpc410097.892Microtus_ochrogaster
ENSRROG00000033355PABPC410080.346ENSMMOG00000002363pabpc49979.507Mola_mola
ENSRROG00000033355PABPC45974.011ENSMODG00000018051-9174.011Monodelphis_domestica
ENSRROG00000033355PABPC49889.352ENSMODG00000017657-10088.939Monodelphis_domestica
ENSRROG00000033355PABPC49982.780ENSMALG00000011017pabpc410082.326Monopterus_albus
ENSRROG00000033355PABPC410097.576MGP_CAROLIEiJ_G0026435-10099.291Mus_caroli
ENSRROG00000033355PABPC49983.898MGP_CAROLIEiJ_G0024864-10083.898Mus_caroli
ENSRROG00000033355PABPC410098.030ENSMUSG00000011257Pabpc410099.405Mus_musculus
ENSRROG00000033355PABPC49997.696MGP_PahariEiJ_G0028765Pabpc4100100.000Mus_pahari
ENSRROG00000033355PABPC49978.752MGP_SPRETEiJ_G0027415Pabpc410099.291Mus_spretus
ENSRROG00000033355PABPC410099.394ENSMPUG00000014414-10099.394Mustela_putorius_furo
ENSRROG00000033355PABPC49553.808ENSMPUG00000006836-10053.642Mustela_putorius_furo
ENSRROG00000033355PABPC410096.672ENSMLUG00000012068PABPC410096.672Myotis_lucifugus
ENSRROG00000033355PABPC410096.970ENSNGAG00000018292Pabpc410096.970Nannospalax_galili
ENSRROG00000033355PABPC45992.788ENSNBRG00000009708pabpc49892.788Neolamprologus_brichardi
ENSRROG00000033355PABPC46786.441ENSNBRG00000010047-7586.441Neolamprologus_brichardi
ENSRROG00000033355PABPC4100100.000ENSNLEG00000011928PABPC4100100.000Nomascus_leucogenys
ENSRROG00000033355PABPC48598.737ENSOPRG00000011984PABPC48798.737Ochotona_princeps
ENSRROG00000033355PABPC49989.528ENSODEG00000017434-10089.409Octodon_degus
ENSRROG00000033355PABPC45385.714ENSODEG00000013457-10085.714Octodon_degus
ENSRROG00000033355PABPC410098.636ENSODEG00000006592-10098.636Octodon_degus
ENSRROG00000033355PABPC410083.281ENSONIG00000008176pabpc410083.906Oreochromis_niloticus
ENSRROG00000033355PABPC49991.429ENSOANG00000010001PABPC410091.429Ornithorhynchus_anatinus
ENSRROG00000033355PABPC49699.367ENSOCUG00000000562PABPC48899.367Oryctolagus_cuniculus
ENSRROG00000033355PABPC49991.049ENSORLG00000017479pabpc49991.049Oryzias_latipes
ENSRROG00000033355PABPC49991.049ENSORLG00020018644pabpc49991.049Oryzias_latipes_hni
ENSRROG00000033355PABPC49991.049ENSORLG00015015042pabpc49991.049Oryzias_latipes_hsok
ENSRROG00000033355PABPC49983.201ENSOMEG00000014410pabpc49983.648Oryzias_melastigma
ENSRROG00000033355PABPC410096.983ENSOGAG00000004067PABPC410096.983Otolemur_garnettii
ENSRROG00000033355PABPC410099.091ENSOARG00000020060PABPC410099.091Ovis_aries
ENSRROG00000033355PABPC410099.848ENSPPAG00000043625PABPC410099.848Pan_paniscus
ENSRROG00000033355PABPC410099.394ENSPPRG00000024727PABPC410099.394Panthera_pardus
ENSRROG00000033355PABPC410099.394ENSPTIG00000005829PABPC410099.394Panthera_tigris_altaica
ENSRROG00000033355PABPC410099.848ENSPTRG00000000573PABPC410099.848Pan_troglodytes
ENSRROG00000033355PABPC410099.848ENSPANG00000009484PABPC410099.848Papio_anubis
ENSRROG00000033355PABPC49984.810ENSPKIG00000025356pabpc49985.443Paramormyrops_kingsleyae
ENSRROG00000033355PABPC49991.746ENSPSIG00000016892PABPC410091.746Pelodiscus_sinensis
ENSRROG00000033355PABPC410081.732ENSPMGG00000009073pabpc49981.476Periophthalmus_magnuspinnatus
ENSRROG00000033355PABPC410097.424ENSPEMG00000023569-9997.424Peromyscus_maniculatus_bairdii
ENSRROG00000033355PABPC410091.212ENSPEMG00000024193-9991.212Peromyscus_maniculatus_bairdii
ENSRROG00000033355PABPC48973.484ENSPMAG00000002836pabpc410073.196Petromyzon_marinus
ENSRROG00000033355PABPC49571.311ENSPMAG00000007885pabpc410069.822Petromyzon_marinus
ENSRROG00000033355PABPC49794.033ENSPCIG00000020674PABPC410093.810Phascolarctos_cinereus
ENSRROG00000033355PABPC410082.786ENSPFOG00000002682pabpc410082.919Poecilia_formosa
ENSRROG00000033355PABPC410082.629ENSPLAG00000010112pabpc410083.333Poecilia_latipinna
ENSRROG00000033355PABPC49983.307ENSPMEG00000019739pabpc410083.075Poecilia_mexicana
ENSRROG00000033355PABPC410083.447ENSPREG00000001589pabpc410083.447Poecilia_reticulata
ENSRROG00000033355PABPC410099.848ENSPPYG00000001506PABPC410099.848Pongo_abelii
ENSRROG00000033355PABPC410094.394ENSPCAG00000003341PABPC410094.394Procavia_capensis
ENSRROG00000033355PABPC410099.697ENSPCOG00000023725-10099.697Propithecus_coquereli
ENSRROG00000033355PABPC49982.173ENSPCOG00000025882-9594.059Propithecus_coquereli
ENSRROG00000033355PABPC49998.824ENSPVAG00000002187PABPC410098.824Pteropus_vampyrus
ENSRROG00000033355PABPC410083.125ENSPNYG00000006134pabpc410083.204Pundamilia_nyererei
ENSRROG00000033355PABPC410083.412ENSPNAG00000024355pabpc410084.038Pygocentrus_nattereri
ENSRROG00000033355PABPC410093.636ENSRNOG00000028592AABR07035074.110093.636Rattus_norvegicus
ENSRROG00000033355PABPC410095.758ENSRNOG00000015642Pabpc410095.758Rattus_norvegicus
ENSRROG00000033355PABPC4100100.000ENSRBIG00000039761PABPC4100100.000Rhinopithecus_bieti
ENSRROG00000033355PABPC410099.545ENSSBOG00000026193PABPC410099.545Saimiri_boliviensis_boliviensis
ENSRROG00000033355PABPC49892.718ENSSHAG00000018139PABPC410092.222Sarcophilus_harrisii
ENSRROG00000033355PABPC49985.714ENSSFOG00015023514pabpc49985.714Scleropages_formosus
ENSRROG00000033355PABPC49982.753ENSSMAG00000009007pabpc49982.104Scophthalmus_maximus
ENSRROG00000033355PABPC49982.726ENSSDUG00000012683pabpc49588.046Seriola_dumerili
ENSRROG00000033355PABPC49982.726ENSSLDG00000013025pabpc410082.969Seriola_lalandi_dorsalis
ENSRROG00000033355PABPC410092.121ENSSARG00000000310PABPC410092.121Sorex_araneus
ENSRROG00000033355PABPC49990.000ENSSPUG00000003204PABPC410090.000Sphenodon_punctatus
ENSRROG00000033355PABPC49990.562ENSSPAG00000009252pabpc49983.176Stegastes_partitus
ENSRROG00000033355PABPC410099.242ENSSSCG00000003660-10099.242Sus_scrofa
ENSRROG00000033355PABPC48950.337ENSSSCG00000036170-9650.337Sus_scrofa
ENSRROG00000033355PABPC49987.595ENSTGUG00000001266PABPC410087.595Taeniopygia_guttata
ENSRROG00000033355PABPC410082.075ENSTRUG00000005907pabpc49982.003Takifugu_rubripes
ENSRROG00000033355PABPC410078.213ENSTNIG00000016902pabpc49978.213Tetraodon_nigroviridis
ENSRROG00000033355PABPC49988.571ENSTBEG00000009035PABPC410088.571Tupaia_belangeri
ENSRROG00000033355PABPC49983.333ENSTTRG00000014340PABPC410087.059Tursiops_truncatus
ENSRROG00000033355PABPC410099.208ENSUAMG00000000303PABPC410099.208Ursus_americanus
ENSRROG00000033355PABPC410099.091ENSUMAG00000019585PABPC410099.107Ursus_maritimus
ENSRROG00000033355PABPC48497.872ENSVPAG00000010041PABPC47797.872Vicugna_pacos
ENSRROG00000033355PABPC410099.366ENSVVUG00000005215PABPC410099.366Vulpes_vulpes
ENSRROG00000033355PABPC45997.024ENSXETG00000027221-10097.024Xenopus_tropicalis
ENSRROG00000033355PABPC49983.492ENSXETG00000010946pabpc410083.492Xenopus_tropicalis
ENSRROG00000033355PABPC49989.351ENSXCOG00000013190pabpc49690.094Xiphophorus_couchianus
ENSRROG00000033355PABPC410082.942ENSXMAG00000019007pabpc410083.178Xiphophorus_maculatus

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