EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSRROG00000033764 (Gene tree)
Gene ID: 104682193
Gene Symbol: -
Alias: -
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Rhinopithecus_roxellana
Status: putative
Strand: Plus strand
Length: 28307 bases
Position: chrKN299167.1:295134-323440
Accession: 104682193
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRROP00000019526	XRN_N	PF03159.18	7.8e-97	1	1
ENSRROP00000019528	XRN_N	PF03159.18	5.9e-43	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRROT00000043698	-	2126	XM_010388739	ENSRROP00000019526	459 (aa)	XP_010387041	A0A2K6PSM6
ENSRROT00000043700	-	312	-	ENSRROP00000019528	103 (aa)	-	A0A2K6PSL8

Gene Model

Click here to download ENSRROG00000033764's gene model file

Pathways

Pathway ID	Pathway Name	Source
rro03008	Ribosome biogenesis in eukaryotes	KEGG
rro03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRROG00000033764's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRROG00000033764	-	100	100.000	ENSG00000114127	XRN1	100	100.000	Homo_sapiens
ENSRROG00000033764	-	100	96.117	ENSAPOG00000000622	xrn1	69	72.365	Acanthochromis_polyacanthus
ENSRROG00000033764	-	100	96.117	ENSAOCG00000014097	xrn1	61	77.181	Amphiprion_ocellaris
ENSRROG00000033764	-	100	94.175	ENSAMXG00000019370	xrn1	95	94.175	Astyanax_mexicanus
ENSRROG00000033764	-	100	100.000	ENSCPOG00000035199	-	100	100.000	Cavia_porcellus
ENSRROG00000033764	-	100	85.437	ENSCING00000001334	-	95	70.109	Ciona_intestinalis
ENSRROG00000033764	-	100	96.117	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSRROG00000033764	-	100	96.117	ENSDARG00000091652	xrn1	74	77.374	Danio_rerio
ENSRROG00000033764	-	100	98.058	ENSDNOG00000034202	-	100	98.058	Dasypus_novemcinctus
ENSRROG00000033764	-	100	100.000	ENSFCAG00000027589	XRN1	100	96.304	Felis_catus
ENSRROG00000033764	-	79	64.463	ENSFHEG00000017356	-	71	63.912	Fundulus_heteroclitus
ENSRROG00000033764	-	100	95.146	ENSFHEG00000017255	-	100	95.146	Fundulus_heteroclitus
ENSRROG00000033764	-	100	94.175	ENSGAFG00000006293	-	100	94.175	Gambusia_affinis
ENSRROG00000033764	-	100	95.146	ENSHBUG00000005908	xrn1	71	69.638	Haplochromis_burtoni
ENSRROG00000033764	-	100	96.117	ENSHCOG00000013992	-	90	96.117	Hippocampus_comes
ENSRROG00000033764	-	100	94.175	ENSKMAG00000021356	xrn1	70	73.295	Kryptolebias_marmoratus
ENSRROG00000033764	-	100	96.117	ENSLBEG00000018656	xrn1	99	94.286	Labrus_bergylta
ENSRROG00000033764	-	100	100.000	ENSLAFG00000015426	XRN1	79	72.045	Loxodonta_africana
ENSRROG00000033764	-	100	100.000	ENSMLEG00000041349	-	100	99.346	Mandrillus_leucophaeus
ENSRROG00000033764	-	100	95.146	ENSMAMG00000013219	xrn1	69	75.562	Mastacembelus_armatus
ENSRROG00000033764	-	100	100.000	ENSMAUG00000014268	-	97	100.000	Mesocricetus_auratus
ENSRROG00000033764	-	100	100.000	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSRROG00000033764	-	77	74.294	ENSMMOG00000020896	-	62	74.294	Mola_mola
ENSRROG00000033764	-	100	100.000	MGP_CAROLIEiJ_G0032535	Xrn1	100	100.000	Mus_caroli
ENSRROG00000033764	-	100	100.000	ENSMUSG00000032410	Xrn1	100	100.000	Mus_musculus
ENSRROG00000033764	-	100	100.000	MGP_PahariEiJ_G0015404	Xrn1	100	100.000	Mus_pahari
ENSRROG00000033764	-	100	100.000	MGP_SPRETEiJ_G0033678	Xrn1	100	100.000	Mus_spretus
ENSRROG00000033764	-	100	95.146	ENSNBRG00000001531	-	99	95.146	Neolamprologus_brichardi
ENSRROG00000033764	-	100	100.000	ENSODEG00000008804	-	100	100.000	Octodon_degus
ENSRROG00000033764	-	100	96.117	ENSPKIG00000011903	-	79	96.117	Paramormyrops_kingsleyae
ENSRROG00000033764	-	100	96.117	ENSSPUG00000010754	-	100	96.117	Sphenodon_punctatus
ENSRROG00000033764	-	76	85.429	ENSSPUG00000010779	-	70	84.746	Sphenodon_punctatus
ENSRROG00000033764	-	80	73.315	ENSSPAG00000009856	-	72	73.315	Stegastes_partitus
ENSRROG00000033764	-	100	93.204	ENSTRUG00000004895	xrn1	72	72.022	Takifugu_rubripes
ENSRROG00000033764	-	100	100.000	ENSVVUG00000024461	XRN1	73	91.404	Vulpes_vulpes
ENSRROG00000033764	-	100	97.087	ENSXETG00000000619	xrn1	99	88.542	Xenopus_tropicalis