EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSRROG00000035151 (Gene tree)
Gene ID: 104656104
Gene Symbol: SRRM1
Alias: MGC39488|POP101|SRM160
Full Name: serine and arginine repetitive matrix 1
Gene Type: protein_coding
Species: Rhinopithecus_roxellana
Status: putative
Strand: Minus strand
Length: 29734 bases
Position: chrKN299716.1:1604522-1634255
Accession: 104656104
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRROP00000022634	PWI	PF01480.17	9.2e-30	1	1
ENSRROP00000022625	PWI	PF01480.17	9.9e-30	1	1
ENSRROP00000022630	PWI	PF01480.17	1e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRROT00000046832	SRRM1-203	2451	-	ENSRROP00000022634	816 (aa)	-	A0A2K6Q1I7
ENSRROT00000046828	SRRM1-202	2742	XM_010355720	ENSRROP00000022630	913 (aa)	XP_010354022	A0A2K6Q1H2
ENSRROT00000046823	SRRM1-201	3925	XM_010355725	ENSRROP00000022625	904 (aa)	XP_010354027	A0A2K6Q1G8

Gene Model

Click here to download ENSRROG00000035151's gene model file

Pathways

Pathway ID	Pathway Name	Source
rro03013	RNA transport	KEGG
rro03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRROG00000035151's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRROG00000035151	SRRM1	100	99.671	ENSG00000133226	SRRM1	100	100.000	Homo_sapiens
ENSRROG00000035151	SRRM1	100	98.028	ENSAMEG00000010075	SRRM1	100	98.028	Ailuropoda_melanoleuca
ENSRROG00000035151	SRRM1	100	98.673	ENSANAG00000035606	SRRM1	100	98.673	Aotus_nancymaae
ENSRROG00000035151	SRRM1	100	97.345	ENSBTAG00000013772	SRRM1	56	96.040	Bos_taurus
ENSRROG00000035151	SRRM1	100	98.248	ENSCJAG00000020822	SRRM1	100	98.248	Callithrix_jacchus
ENSRROG00000035151	SRRM1	96	89.231	ENSCAFG00020000003	-	98	89.196	Canis_lupus_dingo
ENSRROG00000035151	SRRM1	100	97.898	ENSCAFG00020020948	SRRM1	100	97.898	Canis_lupus_dingo
ENSRROG00000035151	SRRM1	100	98.028	ENSTSYG00000006782	SRRM1	100	98.028	Carlito_syrichta
ENSRROG00000035151	SRRM1	99	94.314	ENSCAPG00000011473	SRRM1	100	94.314	Cavia_aperea
ENSRROG00000035151	SRRM1	100	98.467	ENSCCAG00000029474	SRRM1	100	98.467	Cebus_capucinus
ENSRROG00000035151	SRRM1	100	99.755	ENSCATG00000031303	SRRM1	100	99.755	Cercocebus_atys
ENSRROG00000035151	SRRM1	74	97.222	ENSCHOG00000000027	SRRM1	73	98.592	Choloepus_hoffmanni
ENSRROG00000035151	SRRM1	100	99.671	ENSCANG00000028271	SRRM1	100	99.671	Colobus_angolensis_palliatus
ENSRROG00000035151	SRRM1	100	96.296	ENSEASG00005004270	SRRM1	100	96.296	Equus_asinus_asinus
ENSRROG00000035151	SRRM1	100	97.013	ENSECAG00000026981	SRRM1	100	97.013	Equus_caballus
ENSRROG00000035151	SRRM1	51	100.000	ENSEEUG00000013830	SRRM1	63	90.385	Erinaceus_europaeus
ENSRROG00000035151	SRRM1	100	98.119	ENSFCAG00000000678	-	100	98.119	Felis_catus
ENSRROG00000035151	SRRM1	100	99.562	ENSGGOG00000005209	SRRM1	100	99.562	Gorilla_gorilla
ENSRROG00000035151	SRRM1	100	98.230	ENSSTOG00000014640	SRRM1	100	98.230	Ictidomys_tridecemlineatus
ENSRROG00000035151	SRRM1	100	99.779	ENSMFAG00000025726	SRRM1	100	99.779	Macaca_fascicularis
ENSRROG00000035151	SRRM1	80	77.273	ENSMFAG00000038841	-	61	80.684	Macaca_fascicularis
ENSRROG00000035151	SRRM1	100	99.668	ENSMMUG00000006645	SRRM1	100	99.668	Macaca_mulatta
ENSRROG00000035151	SRRM1	100	99.779	ENSMNEG00000039415	SRRM1	100	99.779	Macaca_nemestrina
ENSRROG00000035151	SRRM1	59	70.709	ENSMLEG00000032221	-	61	73.384	Mandrillus_leucophaeus
ENSRROG00000035151	SRRM1	61	98.802	ENSMLEG00000038030	-	100	94.118	Mandrillus_leucophaeus
ENSRROG00000035151	SRRM1	100	98.119	ENSMICG00000006553	SRRM1	100	98.119	Microcebus_murinus
ENSRROG00000035151	SRRM1	96	94.862	ENSMLUG00000006246	SRRM1	87	94.862	Myotis_lucifugus
ENSRROG00000035151	SRRM1	100	99.671	ENSNLEG00000008966	SRRM1	100	99.671	Nomascus_leucogenys
ENSRROG00000035151	SRRM1	55	89.506	ENSMEUG00000014704	SRRM1	57	83.069	Notamacropus_eugenii
ENSRROG00000035151	SRRM1	100	96.623	ENSOGAG00000010210	SRRM1	100	96.623	Otolemur_garnettii
ENSRROG00000035151	SRRM1	92	97.052	ENSOARG00000006453	SRRM1	57	97.342	Ovis_aries
ENSRROG00000035151	SRRM1	100	99.562	ENSPPAG00000043918	SRRM1	100	99.562	Pan_paniscus
ENSRROG00000035151	SRRM1	100	98.119	ENSPPRG00000002509	SRRM1	100	98.119	Panthera_pardus
ENSRROG00000035151	SRRM1	59	94.171	ENSPTIG00000008778	-	60	93.878	Panthera_tigris_altaica
ENSRROG00000035151	SRRM1	100	99.668	ENSPTRG00000000349	SRRM1	100	99.668	Pan_troglodytes
ENSRROG00000035151	SRRM1	100	99.755	ENSPANG00000010194	SRRM1	100	99.755	Papio_anubis
ENSRROG00000035151	SRRM1	55	79.435	ENSPANG00000035568	-	59	78.427	Papio_anubis
ENSRROG00000035151	SRRM1	100	99.344	ENSPPYG00000001716	SRRM1	100	99.344	Pongo_abelii
ENSRROG00000035151	SRRM1	52	100.000	ENSPCAG00000015138	SRRM1	52	100.000	Procavia_capensis
ENSRROG00000035151	SRRM1	100	98.140	ENSPCOG00000021311	SRRM1	100	98.140	Propithecus_coquereli
ENSRROG00000035151	SRRM1	100	97.809	ENSPVAG00000005836	SRRM1	100	97.809	Pteropus_vampyrus
ENSRROG00000035151	SRRM1	100	93.333	ENSRBIG00000035461	SRRM1	99	93.311	Rhinopithecus_bieti
ENSRROG00000035151	SRRM1	100	97.371	ENSSBOG00000019884	SRRM1	99	100.000	Saimiri_boliviensis_boliviensis
ENSRROG00000035151	SRRM1	61	94.426	ENSSARG00000013718	SRRM1	60	94.426	Sorex_araneus
ENSRROG00000035151	SRRM1	60	73.519	ENSSPUG00000015890	SRRM1	57	82.657	Sphenodon_punctatus
ENSRROG00000035151	SRRM1	99	97.366	ENSSSCG00000032947	SRRM1	100	97.808	Sus_scrofa
ENSRROG00000035151	SRRM1	99	97.241	ENSTTRG00000009365	SRRM1	100	97.241	Tursiops_truncatus
ENSRROG00000035151	SRRM1	88	98.622	ENSUMAG00000013121	SRRM1	95	98.622	Ursus_maritimus
ENSRROG00000035151	SRRM1	96	93.424	ENSVPAG00000007698	SRRM1	100	93.424	Vicugna_pacos
ENSRROG00000035151	SRRM1	96	98.469	ENSVVUG00000026966	SRRM1	97	95.419	Vulpes_vulpes