EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSRROG00000036334 (Gene tree)
Gene ID: 104654051
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Rhinopithecus_roxellana
Status: putative
Strand: Plus strand
Length: 107940 bases
Position: chrKN294685.1:816908-924847
Accession: 104654051
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRROP00000025153	RRM_1	PF00076.22	1.8e-32	1	2
ENSRROP00000025153	RRM_1	PF00076.22	1.8e-32	2	2
ENSRROP00000025154	RRM_1	PF00076.22	4.3e-32	1	2
ENSRROP00000025154	RRM_1	PF00076.22	4.3e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRROT00000049369	PSPC1-202	2348	XM_010353132	ENSRROP00000025154	523 (aa)	XP_010351434	A0A2K6Q8Q8
ENSRROT00000049368	PSPC1-201	1449	-	ENSRROP00000025153	393 (aa)	-	A0A2K6Q8P4

Gene Model

Click here to download ENSRROG00000036334's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRROG00000036334's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRROG00000036334	PSPC1	91	59.034	ENSRROG00000043203	NONO	94	62.500
ENSRROG00000036334	PSPC1	80	74.528	ENSRROG00000040992	SFPQ	80	67.832

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRROG00000036334	PSPC1	100	99.426	ENSG00000121390	PSPC1	100	99.426	Homo_sapiens
ENSRROG00000036334	PSPC1	82	81.173	ENSAPOG00000015946	pspc1	84	70.897	Acanthochromis_polyacanthus
ENSRROG00000036334	PSPC1	100	98.853	ENSAMEG00000017420	PSPC1	100	98.853	Ailuropoda_melanoleuca
ENSRROG00000036334	PSPC1	98	63.868	ENSACIG00000018695	pspc1	87	59.660	Amphilophus_citrinellus
ENSRROG00000036334	PSPC1	82	80.556	ENSAOCG00000005279	pspc1	83	70.460	Amphiprion_ocellaris
ENSRROG00000036334	PSPC1	82	80.556	ENSAPEG00000015927	pspc1	84	70.460	Amphiprion_percula
ENSRROG00000036334	PSPC1	82	67.593	ENSATEG00000004878	pspc1	76	61.928	Anabas_testudineus
ENSRROG00000036334	PSPC1	77	93.812	ENSAPLG00000006246	PSPC1	100	93.812	Anas_platyrhynchos
ENSRROG00000036334	PSPC1	80	75.786	ENSAPLG00000003643	SFPQ	69	69.126	Anas_platyrhynchos
ENSRROG00000036334	PSPC1	99	83.117	ENSACAG00000002093	PSPC1	91	89.441	Anolis_carolinensis
ENSRROG00000036334	PSPC1	73	70.732	ENSACAG00000013307	-	56	64.835	Anolis_carolinensis
ENSRROG00000036334	PSPC1	100	98.662	ENSANAG00000000059	PSPC1	100	98.662	Aotus_nancymaae
ENSRROG00000036334	PSPC1	99	62.935	ENSACLG00000027220	pspc1	87	58.887	Astatotilapia_calliptera
ENSRROG00000036334	PSPC1	98	70.380	ENSAMXG00000036881	pspc1	83	71.681	Astyanax_mexicanus
ENSRROG00000036334	PSPC1	100	95.985	ENSBTAG00000003934	PSPC1	100	95.985	Bos_taurus
ENSRROG00000036334	PSPC1	100	98.662	ENSCJAG00000004554	PSPC1	100	98.662	Callithrix_jacchus
ENSRROG00000036334	PSPC1	100	98.662	ENSCAFG00020002009	PSPC1	100	98.662	Canis_lupus_dingo
ENSRROG00000036334	PSPC1	100	95.985	ENSCHIG00000016708	PSPC1	100	95.985	Capra_hircus
ENSRROG00000036334	PSPC1	80	88.389	ENSTSYG00000032882	PSPC1	93	85.748	Carlito_syrichta
ENSRROG00000036334	PSPC1	100	97.201	ENSCPOG00000000395	PSPC1	100	97.201	Cavia_porcellus
ENSRROG00000036334	PSPC1	100	98.662	ENSCCAG00000033498	PSPC1	100	98.662	Cebus_capucinus
ENSRROG00000036334	PSPC1	100	99.235	ENSCATG00000036434	PSPC1	100	99.235	Cercocebus_atys
ENSRROG00000036334	PSPC1	88	88.121	ENSCLAG00000005241	PSPC1	99	88.121	Chinchilla_lanigera
ENSRROG00000036334	PSPC1	98	96.891	ENSCHOG00000008913	PSPC1	100	91.396	Choloepus_hoffmanni
ENSRROG00000036334	PSPC1	99	86.882	ENSCPBG00000020859	PSPC1	91	93.096	Chrysemys_picta_bellii
ENSRROG00000036334	PSPC1	78	58.766	ENSCSAVG00000003533	-	58	58.065	Ciona_savignyi
ENSRROG00000036334	PSPC1	67	99.245	ENSCANG00000018948	PSPC1	88	99.245	Colobus_angolensis_palliatus
ENSRROG00000036334	PSPC1	100	96.941	ENSCGRG00001018368	Pspc1	100	96.941	Cricetulus_griseus_chok1gshd
ENSRROG00000036334	PSPC1	100	96.941	ENSCGRG00000011724	Pspc1	100	96.941	Cricetulus_griseus_crigri
ENSRROG00000036334	PSPC1	81	78.616	ENSCVAG00000007679	-	78	68.009	Cyprinodon_variegatus
ENSRROG00000036334	PSPC1	98	72.468	ENSDARG00000006621	pspc1	100	67.391	Danio_rerio
ENSRROG00000036334	PSPC1	100	96.941	ENSDNOG00000011078	PSPC1	100	96.941	Dasypus_novemcinctus
ENSRROG00000036334	PSPC1	100	94.073	ENSDORG00000016050	Pspc1	100	94.073	Dipodomys_ordii
ENSRROG00000036334	PSPC1	55	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSRROG00000036334	PSPC1	82	73.313	ENSEBUG00000003964	-	62	72.254	Eptatretus_burgeri
ENSRROG00000036334	PSPC1	79	45.238	ENSEBUG00000010133	pspc1	78	48.485	Eptatretus_burgeri
ENSRROG00000036334	PSPC1	100	97.897	ENSEASG00005000119	PSPC1	100	97.897	Equus_asinus_asinus
ENSRROG00000036334	PSPC1	100	97.897	ENSECAG00000017286	PSPC1	100	97.897	Equus_caballus
ENSRROG00000036334	PSPC1	88	81.366	ENSEEUG00000011288	-	88	81.366	Erinaceus_europaeus
ENSRROG00000036334	PSPC1	99	71.820	ENSELUG00000003746	pspc1	82	79.412	Esox_lucius
ENSRROG00000036334	PSPC1	100	98.662	ENSFCAG00000027841	PSPC1	100	98.662	Felis_catus
ENSRROG00000036334	PSPC1	89	94.647	ENSFALG00000008750	PSPC1	99	87.954	Ficedula_albicollis
ENSRROG00000036334	PSPC1	100	95.029	ENSFDAG00000002617	PSPC1	100	95.029	Fukomys_damarensis
ENSRROG00000036334	PSPC1	73	82.986	ENSGMOG00000015074	pspc1	86	65.875	Gadus_morhua
ENSRROG00000036334	PSPC1	88	95.238	ENSGALG00000017142	PSPC1	89	94.647	Gallus_gallus
ENSRROG00000036334	PSPC1	98	68.182	ENSGAFG00000006327	pspc1	70	75.588	Gambusia_affinis
ENSRROG00000036334	PSPC1	84	73.414	ENSGACG00000014901	pspc1	93	73.433	Gasterosteus_aculeatus
ENSRROG00000036334	PSPC1	84	72.892	ENSGAGG00000017325	-	58	67.105	Gopherus_agassizii
ENSRROG00000036334	PSPC1	99	86.441	ENSGAGG00000019164	PSPC1	91	93.096	Gopherus_agassizii
ENSRROG00000036334	PSPC1	100	99.235	ENSGGOG00000003414	PSPC1	100	99.235	Gorilla_gorilla
ENSRROG00000036334	PSPC1	98	69.598	ENSHBUG00000001139	pspc1	87	69.742	Haplochromis_burtoni
ENSRROG00000036334	PSPC1	100	96.941	ENSHGLG00000018811	PSPC1	100	96.941	Heterocephalus_glaber_female
ENSRROG00000036334	PSPC1	89	92.571	ENSHGLG00100007962	PSPC1	100	92.571	Heterocephalus_glaber_male
ENSRROG00000036334	PSPC1	84	72.892	ENSHCOG00000013251	pspc1	83	70.321	Hippocampus_comes
ENSRROG00000036334	PSPC1	98	73.834	ENSIPUG00000013192	pspc1	92	72.098	Ictalurus_punctatus
ENSRROG00000036334	PSPC1	100	97.897	ENSSTOG00000026833	PSPC1	100	97.897	Ictidomys_tridecemlineatus
ENSRROG00000036334	PSPC1	100	97.323	ENSJJAG00000018334	Pspc1	100	97.323	Jaculus_jaculus
ENSRROG00000036334	PSPC1	88	55.724	ENSKMAG00000013525	-	91	52.236	Kryptolebias_marmoratus
ENSRROG00000036334	PSPC1	94	73.098	ENSLBEG00000004474	pspc1	78	70.901	Labrus_bergylta
ENSRROG00000036334	PSPC1	99	77.256	ENSLACG00000010762	PSPC1	88	85.129	Latimeria_chalumnae
ENSRROG00000036334	PSPC1	88	84.382	ENSLOCG00000010832	pspc1	94	82.046	Lepisosteus_oculatus
ENSRROG00000036334	PSPC1	100	97.132	ENSLAFG00000010968	PSPC1	100	97.132	Loxodonta_africana
ENSRROG00000036334	PSPC1	100	99.235	ENSMFAG00000032728	PSPC1	100	99.235	Macaca_fascicularis
ENSRROG00000036334	PSPC1	100	99.235	ENSMMUG00000020262	PSPC1	100	99.235	Macaca_mulatta
ENSRROG00000036334	PSPC1	100	99.235	ENSMNEG00000027401	PSPC1	100	99.235	Macaca_nemestrina
ENSRROG00000036334	PSPC1	100	99.749	ENSMLEG00000039043	PSPC1	99	100.000	Mandrillus_leucophaeus
ENSRROG00000036334	PSPC1	82	78.086	ENSMAMG00000004333	pspc1	83	68.996	Mastacembelus_armatus
ENSRROG00000036334	PSPC1	99	62.935	ENSMZEG00005005726	pspc1	87	58.887	Maylandia_zebra
ENSRROG00000036334	PSPC1	77	93.596	ENSMGAG00000015134	PSPC1	100	93.596	Meleagris_gallopavo
ENSRROG00000036334	PSPC1	100	88.250	ENSMAUG00000021067	Pspc1	99	91.342	Mesocricetus_auratus
ENSRROG00000036334	PSPC1	100	98.470	ENSMICG00000013970	PSPC1	100	98.470	Microcebus_murinus
ENSRROG00000036334	PSPC1	100	97.137	ENSMOCG00000006060	Pspc1	100	97.137	Microtus_ochrogaster
ENSRROG00000036334	PSPC1	87	54.651	ENSMMOG00000004352	pspc1	61	51.884	Mola_mola
ENSRROG00000036334	PSPC1	98	97.668	ENSMODG00000008029	PSPC1	78	96.701	Monodelphis_domestica
ENSRROG00000036334	PSPC1	82	77.469	ENSMALG00000008914	pspc1	88	67.591	Monopterus_albus
ENSRROG00000036334	PSPC1	100	97.137	MGP_CAROLIEiJ_G0019341	Pspc1	100	97.137	Mus_caroli
ENSRROG00000036334	PSPC1	100	97.328	ENSMUSG00000021938	Pspc1	100	97.328	Mus_musculus
ENSRROG00000036334	PSPC1	100	97.137	MGP_PahariEiJ_G0030359	Pspc1	100	97.137	Mus_pahari
ENSRROG00000036334	PSPC1	100	97.137	MGP_SPRETEiJ_G0020232	Pspc1	100	97.137	Mus_spretus
ENSRROG00000036334	PSPC1	100	98.470	ENSMPUG00000013347	PSPC1	100	98.470	Mustela_putorius_furo
ENSRROG00000036334	PSPC1	100	96.198	ENSMLUG00000017663	PSPC1	100	96.198	Myotis_lucifugus
ENSRROG00000036334	PSPC1	100	97.132	ENSNGAG00000011271	Pspc1	100	97.132	Nannospalax_galili
ENSRROG00000036334	PSPC1	98	64.573	ENSNBRG00000014059	pspc1	76	69.207	Neolamprologus_brichardi
ENSRROG00000036334	PSPC1	100	99.235	ENSNLEG00000001294	PSPC1	100	99.235	Nomascus_leucogenys
ENSRROG00000036334	PSPC1	84	96.094	ENSMEUG00000000476	PSPC1	84	96.094	Notamacropus_eugenii
ENSRROG00000036334	PSPC1	100	86.042	ENSODEG00000007817	-	100	80.907	Octodon_degus
ENSRROG00000036334	PSPC1	99	87.500	ENSODEG00000019012	-	100	85.444	Octodon_degus
ENSRROG00000036334	PSPC1	98	69.849	ENSONIG00000012010	pspc1	87	68.856	Oreochromis_niloticus
ENSRROG00000036334	PSPC1	76	97.744	ENSOANG00000009017	-	100	97.744	Ornithorhynchus_anatinus
ENSRROG00000036334	PSPC1	99	66.412	ENSOANG00000011381	-	99	63.931	Ornithorhynchus_anatinus
ENSRROG00000036334	PSPC1	100	98.088	ENSOCUG00000006153	PSPC1	100	98.088	Oryctolagus_cuniculus
ENSRROG00000036334	PSPC1	82	79.012	ENSORLG00000004232	-	92	62.035	Oryzias_latipes
ENSRROG00000036334	PSPC1	82	78.395	ENSORLG00020000578	PSPC1	92	63.168	Oryzias_latipes_hni
ENSRROG00000036334	PSPC1	82	79.321	ENSORLG00015017480	pspc1	87	66.022	Oryzias_latipes_hsok
ENSRROG00000036334	PSPC1	53	82.857	ENSOMEG00000003779	pspc1	96	82.775	Oryzias_melastigma
ENSRROG00000036334	PSPC1	100	98.853	ENSOGAG00000012643	PSPC1	100	98.853	Otolemur_garnettii
ENSRROG00000036334	PSPC1	100	91.238	ENSOARG00000014163	PSPC1	100	91.238	Ovis_aries
ENSRROG00000036334	PSPC1	84	99.094	ENSPPAG00000009836	PSPC1	97	96.232	Pan_paniscus
ENSRROG00000036334	PSPC1	100	98.662	ENSPPRG00000008833	PSPC1	100	98.662	Panthera_pardus
ENSRROG00000036334	PSPC1	100	82.792	ENSPTIG00000016917	PSPC1	100	82.792	Panthera_tigris_altaica
ENSRROG00000036334	PSPC1	100	98.982	ENSPTRG00000005677	PSPC1	100	98.982	Pan_troglodytes
ENSRROG00000036334	PSPC1	100	99.426	ENSPANG00000001992	PSPC1	100	99.426	Papio_anubis
ENSRROG00000036334	PSPC1	98	74.936	ENSPKIG00000003578	pspc1	84	76.169	Paramormyrops_kingsleyae
ENSRROG00000036334	PSPC1	99	86.842	ENSPSIG00000005168	PSPC1	99	86.898	Pelodiscus_sinensis
ENSRROG00000036334	PSPC1	78	70.794	ENSPMGG00000015135	pspc1	86	70.833	Periophthalmus_magnuspinnatus
ENSRROG00000036334	PSPC1	100	97.514	ENSPEMG00000015214	Pspc1	100	97.514	Peromyscus_maniculatus_bairdii
ENSRROG00000036334	PSPC1	71	44.558	ENSPMAG00000004618	pspc1	89	44.558	Petromyzon_marinus
ENSRROG00000036334	PSPC1	99	97.126	ENSPCIG00000017680	PSPC1	100	97.126	Phascolarctos_cinereus
ENSRROG00000036334	PSPC1	92	71.925	ENSPFOG00000003362	pspc1	93	65.600	Poecilia_formosa
ENSRROG00000036334	PSPC1	81	63.444	ENSPLAG00000004407	-	55	58.824	Poecilia_latipinna
ENSRROG00000036334	PSPC1	97	69.424	ENSPLAG00000011540	pspc1	92	65.600	Poecilia_latipinna
ENSRROG00000036334	PSPC1	75	68.919	ENSPMEG00000001025	-	51	60.753	Poecilia_mexicana
ENSRROG00000036334	PSPC1	97	68.922	ENSPMEG00000008322	pspc1	92	65.200	Poecilia_mexicana
ENSRROG00000036334	PSPC1	97	68.672	ENSPREG00000007786	pspc1	92	65.600	Poecilia_reticulata
ENSRROG00000036334	PSPC1	100	98.853	ENSPPYG00000005186	PSPC1	100	98.853	Pongo_abelii
ENSRROG00000036334	PSPC1	73	100.000	ENSPCAG00000008314	-	66	100.000	Procavia_capensis
ENSRROG00000036334	PSPC1	98	98.705	ENSPCOG00000014364	PSPC1	100	94.264	Propithecus_coquereli
ENSRROG00000036334	PSPC1	100	94.750	ENSPVAG00000005036	PSPC1	100	94.073	Pteropus_vampyrus
ENSRROG00000036334	PSPC1	99	63.184	ENSPNYG00000008893	pspc1	87	58.887	Pundamilia_nyererei
ENSRROG00000036334	PSPC1	98	72.494	ENSPNAG00000016511	pspc1	93	70.528	Pygocentrus_nattereri
ENSRROG00000036334	PSPC1	100	97.323	ENSRNOG00000020782	Pspc1	100	97.323	Rattus_norvegicus
ENSRROG00000036334	PSPC1	93	100.000	ENSRBIG00000036057	PSPC1	100	100.000	Rhinopithecus_bieti
ENSRROG00000036334	PSPC1	79	89.104	ENSSBOG00000028172	PSPC1	91	94.624	Saimiri_boliviensis_boliviensis
ENSRROG00000036334	PSPC1	100	91.810	ENSSHAG00000004696	PSPC1	100	91.810	Sarcophilus_harrisii
ENSRROG00000036334	PSPC1	83	85.583	ENSSFOG00015001395	pspc1	90	78.372	Scleropages_formosus
ENSRROG00000036334	PSPC1	87	74.785	ENSSMAG00000001761	pspc1	86	74.785	Scophthalmus_maximus
ENSRROG00000036334	PSPC1	82	81.173	ENSSDUG00000010651	pspc1	81	71.460	Seriola_dumerili
ENSRROG00000036334	PSPC1	82	74.303	ENSSLDG00000004284	pspc1	87	60.087	Seriola_lalandi_dorsalis
ENSRROG00000036334	PSPC1	100	88.719	ENSSARG00000000888	PSPC1	100	89.101	Sorex_araneus
ENSRROG00000036334	PSPC1	99	75.283	ENSSPUG00000008550	PSPC1	89	81.064	Sphenodon_punctatus
ENSRROG00000036334	PSPC1	81	66.044	ENSSPUG00000001136	-	53	61.453	Sphenodon_punctatus
ENSRROG00000036334	PSPC1	86	78.171	ENSSPAG00000001921	pspc1	82	70.241	Stegastes_partitus
ENSRROG00000036334	PSPC1	100	96.947	ENSSSCG00000009569	PSPC1	100	96.947	Sus_scrofa
ENSRROG00000036334	PSPC1	89	94.647	ENSTGUG00000011295	PSPC1	100	94.647	Taeniopygia_guttata
ENSRROG00000036334	PSPC1	93	65.147	ENSTRUG00000011335	pspc1	77	65.937	Takifugu_rubripes
ENSRROG00000036334	PSPC1	93	66.400	ENSTNIG00000010358	pspc1	89	64.509	Tetraodon_nigroviridis
ENSRROG00000036334	PSPC1	98	86.788	ENSTBEG00000002361	PSPC1	100	76.099	Tupaia_belangeri
ENSRROG00000036334	PSPC1	100	96.947	ENSTTRG00000003343	PSPC1	100	96.947	Tursiops_truncatus
ENSRROG00000036334	PSPC1	89	98.860	ENSUAMG00000012309	PSPC1	100	98.860	Ursus_americanus
ENSRROG00000036334	PSPC1	93	98.973	ENSUMAG00000013993	PSPC1	100	98.973	Ursus_maritimus
ENSRROG00000036334	PSPC1	76	99.499	ENSVPAG00000010029	PSPC1	100	99.499	Vicugna_pacos
ENSRROG00000036334	PSPC1	100	98.662	ENSVVUG00000006414	PSPC1	100	98.705	Vulpes_vulpes
ENSRROG00000036334	PSPC1	98	68.250	ENSXCOG00000017438	pspc1	83	73.371	Xiphophorus_couchianus
ENSRROG00000036334	PSPC1	98	68.500	ENSXMAG00000007929	pspc1	83	73.654	Xiphophorus_maculatus