EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSRROG00000036496 (Gene tree)
Gene ID: 104666182
Gene Symbol: TRIM39
Alias: RNF23
Full Name: E3 ubiquitin-protein ligase TRIM39
Gene Type: protein_coding
Species: Rhinopithecus_roxellana
Status: putative
Strand: Plus strand
Length: 20377 bases
Position: chrKN296308.1:482957-503333
Accession: 104666181
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRROP00000025539	Rpr2	PF04032.16	4.7e-17	1	1
ENSRROP00000025530	Rpr2	PF04032.16	2.4e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRROT00000049727	TRIM39-202	3071	XM_010368190	ENSRROP00000025510	483 (aa)	XP_010366492	A0A2K6Q9Q8
ENSRROT00000049756	TRIM39-205	534	XM_010368191	ENSRROP00000025539	177 (aa)	XP_010366493	A0A2K6Q9T5
ENSRROT00000049723	TRIM39-201	3200	XM_010368185	ENSRROP00000025506	488 (aa)	XP_010366487	A0A2K6Q9R4
ENSRROT00000049754	TRIM39-204	1557	-	ENSRROP00000025537	518 (aa)	-	A0A2K6Q9S0
ENSRROT00000049747	TRIM39-203	1512	-	ENSRROP00000025530	503 (aa)	-	A0A2K6Q9S8

Gene Model

Click here to download ENSRROG00000036496's gene model file

Pathways

Pathway ID	Pathway Name	Source
rro03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRROG00000036496's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRROG00000036496	TRIM39	100	98.608	ENSANAG00000032075	TRIM39	100	98.608	Aotus_nancymaae
ENSRROG00000036496	TRIM39	100	98.012	ENSCJAG00000020681	TRIM39	100	98.012	Callithrix_jacchus
ENSRROG00000036496	TRIM39	100	98.410	ENSCCAG00000036784	TRIM39	100	98.410	Cebus_capucinus
ENSRROG00000036496	TRIM39	100	99.602	ENSCATG00000044044	TRIM39	100	99.602	Cercocebus_atys
ENSRROG00000036496	TRIM39	100	99.006	ENSGGOG00000016403	TRIM39	100	99.006	Gorilla_gorilla
ENSRROG00000036496	TRIM39	100	99.801	ENSMFAG00000046182	TRIM39	100	99.801	Macaca_fascicularis
ENSRROG00000036496	TRIM39	100	99.801	ENSMMUG00000011682	RPP21	100	99.801	Macaca_mulatta
ENSRROG00000036496	TRIM39	100	99.602	ENSMNEG00000034999	TRIM39	100	99.602	Macaca_nemestrina
ENSRROG00000036496	TRIM39	100	99.801	ENSMLEG00000034263	TRIM39	100	99.801	Mandrillus_leucophaeus
ENSRROG00000036496	TRIM39	100	99.006	ENSNLEG00000005026	TRIM39	100	99.006	Nomascus_leucogenys
ENSRROG00000036496	TRIM39	100	99.205	ENSPPAG00000040674	TRIM39	100	99.205	Pan_paniscus
ENSRROG00000036496	TRIM39	100	99.205	ENSPTRG00000017923	TRIM39	100	99.205	Pan_troglodytes
ENSRROG00000036496	TRIM39	100	99.602	ENSPANG00000000655	TRIM39	100	99.602	Papio_anubis
ENSRROG00000036496	TRIM39	100	100.000	ENSRBIG00000040889	TRIM39	100	100.000	Rhinopithecus_bieti