EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSRROG00000040431 (Gene tree)
Gene ID: 104672083
Gene Symbol: CPSF4
Alias: CPSF30|NAR
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Rhinopithecus_roxellana
Status: putative
Strand: Plus strand
Length: 19113 bases
Position: chrKN297476.1:724667-743779
Accession: 104672083
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRROP00000033727	zf-CCCH	PF00642.24	2.7e-20	1	2
ENSRROP00000033727	zf-CCCH	PF00642.24	2.7e-20	2	2
ENSRROP00000033724	zf-CCCH	PF00642.24	3.2e-20	1	2
ENSRROP00000033724	zf-CCCH	PF00642.24	3.2e-20	2	2
ENSRROP00000033734	zf-CCCH	PF00642.24	2.1e-15	1	2
ENSRROP00000033734	zf-CCCH	PF00642.24	2.1e-15	2	2
ENSRROP00000033734	zf-CCHC	PF00098.23	4.9e-06	1	1
ENSRROP00000033727	zf-CCHC	PF00098.23	5.9e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRROT00000058167	CPSF4-202	1869	XM_010375770	ENSRROP00000033727	244 (aa)	XP_010374072	A0A2K6QY62
ENSRROT00000058164	CPSF4-201	3856	-	ENSRROP00000033724	248 (aa)	-	A0A2K6QY84
ENSRROT00000058174	CPSF4-203	636	-	ENSRROP00000033734	211 (aa)	-	A0A2K6QY93

Gene Model

Click here to download ENSRROG00000040431's gene model file

Pathways

Pathway ID	Pathway Name	Source
rro03015	mRNA surveillance pathway	KEGG
rro05164	Influenza A	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRROG00000040431's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRROG00000040431	CPSF4	67	68.293	ENSRROG00000037051	CPSF4L	92	68.293

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRROG00000040431	CPSF4	100	100.000	ENSG00000160917	CPSF4	100	100.000	Homo_sapiens
ENSRROG00000040431	CPSF4	64	68.362	ENSAPOG00000004921	cpsf4	100	68.362	Acanthochromis_polyacanthus
ENSRROG00000040431	CPSF4	100	89.963	ENSAMEG00000006252	CPSF4	100	89.963	Ailuropoda_melanoleuca
ENSRROG00000040431	CPSF4	100	87.705	ENSACIG00000009248	cpsf4	100	87.705	Amphilophus_citrinellus
ENSRROG00000040431	CPSF4	100	81.132	ENSAOCG00000019616	cpsf4	100	81.132	Amphiprion_ocellaris
ENSRROG00000040431	CPSF4	100	81.132	ENSAPEG00000011679	cpsf4	100	81.132	Amphiprion_percula
ENSRROG00000040431	CPSF4	100	85.020	ENSATEG00000007010	cpsf4	100	85.425	Anabas_testudineus
ENSRROG00000040431	CPSF4	100	83.643	ENSACAG00000012941	CPSF4	89	85.502	Anolis_carolinensis
ENSRROG00000040431	CPSF4	100	100.000	ENSANAG00000021360	CPSF4	100	100.000	Aotus_nancymaae
ENSRROG00000040431	CPSF4	100	81.148	ENSACLG00000010374	cpsf4	100	81.148	Astatotilapia_calliptera
ENSRROG00000040431	CPSF4	100	85.782	ENSAMXG00000031647	cpsf4	100	84.434	Astyanax_mexicanus
ENSRROG00000040431	CPSF4	100	98.770	ENSBTAG00000002090	CPSF4	100	98.770	Bos_taurus
ENSRROG00000040431	CPSF4	100	100.000	ENSCJAG00000015826	CPSF4	100	100.000	Callithrix_jacchus
ENSRROG00000040431	CPSF4	100	98.113	ENSCAFG00000015036	CPSF4	100	98.113	Canis_familiaris
ENSRROG00000040431	CPSF4	100	90.521	ENSCAFG00020014462	CPSF4	100	90.521	Canis_lupus_dingo
ENSRROG00000040431	CPSF4	100	99.052	ENSCHIG00000014313	CPSF4	100	99.052	Capra_hircus
ENSRROG00000040431	CPSF4	88	92.130	ENSTSYG00000008195	-	99	91.556	Carlito_syrichta
ENSRROG00000040431	CPSF4	100	90.204	ENSTSYG00000014604	-	100	90.204	Carlito_syrichta
ENSRROG00000040431	CPSF4	100	99.180	ENSTSYG00000005712	-	100	99.180	Carlito_syrichta
ENSRROG00000040431	CPSF4	76	98.750	ENSCAPG00000013881	CPSF4	82	98.750	Cavia_aperea
ENSRROG00000040431	CPSF4	100	99.180	ENSCPOG00000001783	CPSF4	100	99.180	Cavia_porcellus
ENSRROG00000040431	CPSF4	100	100.000	ENSCCAG00000028291	CPSF4	100	100.000	Cebus_capucinus
ENSRROG00000040431	CPSF4	100	100.000	ENSCATG00000038440	CPSF4	100	100.000	Cercocebus_atys
ENSRROG00000040431	CPSF4	100	99.052	ENSCLAG00000007050	CPSF4	100	99.052	Chinchilla_lanigera
ENSRROG00000040431	CPSF4	100	90.706	ENSCSAG00000017795	CPSF4	100	90.706	Chlorocebus_sabaeus
ENSRROG00000040431	CPSF4	68	80.723	ENSCPBG00000010269	-	100	80.723	Chrysemys_picta_bellii
ENSRROG00000040431	CPSF4	78	82.407	ENSCPBG00000020869	CPSF4	100	84.722	Chrysemys_picta_bellii
ENSRROG00000040431	CPSF4	96	56.299	ENSCING00000021080	-	97	55.906	Ciona_intestinalis
ENSRROG00000040431	CPSF4	96	53.025	ENSCSAVG00000011469	-	97	50.890	Ciona_savignyi
ENSRROG00000040431	CPSF4	100	100.000	ENSCANG00000019384	CPSF4	100	100.000	Colobus_angolensis_palliatus
ENSRROG00000040431	CPSF4	100	99.180	ENSCGRG00001024184	Cpsf4	100	99.180	Cricetulus_griseus_chok1gshd
ENSRROG00000040431	CPSF4	100	99.052	ENSCGRG00000013892	Cpsf4	100	99.052	Cricetulus_griseus_crigri
ENSRROG00000040431	CPSF4	100	84.360	ENSCSEG00000019055	cpsf4	100	84.360	Cynoglossus_semilaevis
ENSRROG00000040431	CPSF4	100	80.377	ENSCVAG00000016528	cpsf4	100	80.377	Cyprinodon_variegatus
ENSRROG00000040431	CPSF4	100	79.336	ENSDARG00000020217	cpsf4	100	79.705	Danio_rerio
ENSRROG00000040431	CPSF4	100	90.335	ENSDNOG00000006344	CPSF4	100	90.335	Dasypus_novemcinctus
ENSRROG00000040431	CPSF4	79	87.097	ENSDORG00000000742	Cpsf4	100	87.097	Dipodomys_ordii
ENSRROG00000040431	CPSF4	100	51.505	FBgn0015621	Clp	99	53.082	Drosophila_melanogaster
ENSRROG00000040431	CPSF4	77	100.000	ENSETEG00000002608	CPSF4	70	100.000	Echinops_telfairi
ENSRROG00000040431	CPSF4	99	70.968	ENSEBUG00000012552	cpsf4	98	70.370	Eptatretus_burgeri
ENSRROG00000040431	CPSF4	100	99.180	ENSEASG00005002487	CPSF4	100	99.180	Equus_asinus_asinus
ENSRROG00000040431	CPSF4	100	99.052	ENSECAG00000007525	CPSF4	100	99.052	Equus_caballus
ENSRROG00000040431	CPSF4	68	100.000	ENSEEUG00000002158	CPSF4	73	100.000	Erinaceus_europaeus
ENSRROG00000040431	CPSF4	100	79.412	ENSELUG00000011481	cpsf4	100	79.412	Esox_lucius
ENSRROG00000040431	CPSF4	100	99.052	ENSFCAG00000015070	CPSF4	100	99.052	Felis_catus
ENSRROG00000040431	CPSF4	68	56.977	ENSFALG00000012906	-	100	56.977	Ficedula_albicollis
ENSRROG00000040431	CPSF4	100	95.082	ENSFALG00000013799	CPSF4	100	95.082	Ficedula_albicollis
ENSRROG00000040431	CPSF4	88	97.838	ENSFDAG00000014092	CPSF4	100	97.838	Fukomys_damarensis
ENSRROG00000040431	CPSF4	100	80.000	ENSFHEG00000010880	cpsf4	100	80.000	Fundulus_heteroclitus
ENSRROG00000040431	CPSF4	100	80.233	ENSGMOG00000002330	cpsf4	100	80.233	Gadus_morhua
ENSRROG00000040431	CPSF4	100	95.082	ENSGALG00000004714	CPSF4	100	95.082	Gallus_gallus
ENSRROG00000040431	CPSF4	99	39.888	ENSGALG00000004441	-	98	38.764	Gallus_gallus
ENSRROG00000040431	CPSF4	100	79.924	ENSGAFG00000010580	cpsf4	100	79.924	Gambusia_affinis
ENSRROG00000040431	CPSF4	100	81.102	ENSGACG00000007792	cpsf4	100	82.283	Gasterosteus_aculeatus
ENSRROG00000040431	CPSF4	75	76.923	ENSGAGG00000020579	-	92	81.212	Gopherus_agassizii
ENSRROG00000040431	CPSF4	100	85.130	ENSGAGG00000021835	CPSF4	100	84.758	Gopherus_agassizii
ENSRROG00000040431	CPSF4	100	100.000	ENSGGOG00000015131	CPSF4	100	100.000	Gorilla_gorilla
ENSRROG00000040431	CPSF4	100	80.377	ENSHBUG00000013699	cpsf4	100	80.377	Haplochromis_burtoni
ENSRROG00000040431	CPSF4	100	98.578	ENSHGLG00000017150	CPSF4	100	98.578	Heterocephalus_glaber_female
ENSRROG00000040431	CPSF4	100	70.616	ENSHGLG00100017302	-	100	68.720	Heterocephalus_glaber_male
ENSRROG00000040431	CPSF4	83	96.023	ENSHGLG00100009215	-	100	96.023	Heterocephalus_glaber_male
ENSRROG00000040431	CPSF4	100	79.245	ENSHCOG00000004397	cpsf4	100	79.245	Hippocampus_comes
ENSRROG00000040431	CPSF4	100	78.967	ENSIPUG00000017147	cpsf4	100	79.705	Ictalurus_punctatus
ENSRROG00000040431	CPSF4	100	99.052	ENSSTOG00000001688	CPSF4	100	99.052	Ictidomys_tridecemlineatus
ENSRROG00000040431	CPSF4	100	99.052	ENSJJAG00000019426	Cpsf4	100	99.052	Jaculus_jaculus
ENSRROG00000040431	CPSF4	100	78.113	ENSKMAG00000015642	cpsf4	100	78.113	Kryptolebias_marmoratus
ENSRROG00000040431	CPSF4	100	64.490	ENSLACG00000018470	-	100	64.490	Latimeria_chalumnae
ENSRROG00000040431	CPSF4	100	83.333	ENSLACG00000010938	CPSF4	100	83.333	Latimeria_chalumnae
ENSRROG00000040431	CPSF4	100	81.413	ENSLOCG00000004814	cpsf4	100	84.015	Lepisosteus_oculatus
ENSRROG00000040431	CPSF4	100	89.591	ENSLAFG00000000159	CPSF4	100	97.516	Loxodonta_africana
ENSRROG00000040431	CPSF4	100	100.000	ENSMFAG00000001462	CPSF4	100	100.000	Macaca_fascicularis
ENSRROG00000040431	CPSF4	100	100.000	ENSMMUG00000019191	CPSF4	100	100.000	Macaca_mulatta
ENSRROG00000040431	CPSF4	100	100.000	ENSMNEG00000032306	CPSF4	100	100.000	Macaca_nemestrina
ENSRROG00000040431	CPSF4	100	100.000	ENSMLEG00000034721	CPSF4	100	100.000	Mandrillus_leucophaeus
ENSRROG00000040431	CPSF4	100	80.827	ENSMAMG00000006244	cpsf4	100	80.827	Mastacembelus_armatus
ENSRROG00000040431	CPSF4	100	80.377	ENSMZEG00005007515	cpsf4	100	80.377	Maylandia_zebra
ENSRROG00000040431	CPSF4	86	94.762	ENSMGAG00000004235	CPSF4	100	94.762	Meleagris_gallopavo
ENSRROG00000040431	CPSF4	100	99.052	ENSMAUG00000021253	Cpsf4	100	99.052	Mesocricetus_auratus
ENSRROG00000040431	CPSF4	100	99.526	ENSMICG00000017429	CPSF4	100	99.526	Microcebus_murinus
ENSRROG00000040431	CPSF4	100	99.052	ENSMOCG00000014901	Cpsf4	100	99.052	Microtus_ochrogaster
ENSRROG00000040431	CPSF4	100	85.308	ENSMMOG00000001813	cpsf4	100	85.308	Mola_mola
ENSRROG00000040431	CPSF4	100	88.848	ENSMODG00000001367	CPSF4	100	88.848	Monodelphis_domestica
ENSRROG00000040431	CPSF4	100	81.273	ENSMALG00000012611	cpsf4	100	81.273	Monopterus_albus
ENSRROG00000040431	CPSF4	100	99.180	MGP_CAROLIEiJ_G0028012	Cpsf4	100	99.180	Mus_caroli
ENSRROG00000040431	CPSF4	100	99.180	ENSMUSG00000029625	Cpsf4	100	99.180	Mus_musculus
ENSRROG00000040431	CPSF4	100	99.180	MGP_PahariEiJ_G0024581	Cpsf4	100	99.180	Mus_pahari
ENSRROG00000040431	CPSF4	100	99.590	MGP_SPRETEiJ_G0029013	Cpsf4	100	99.590	Mus_spretus
ENSRROG00000040431	CPSF4	100	89.963	ENSMPUG00000016508	CPSF4	100	89.963	Mustela_putorius_furo
ENSRROG00000040431	CPSF4	86	98.095	ENSMLUG00000010980	CPSF4	100	98.095	Myotis_lucifugus
ENSRROG00000040431	CPSF4	100	98.578	ENSNGAG00000001567	Cpsf4	100	98.578	Nannospalax_galili
ENSRROG00000040431	CPSF4	90	79.668	ENSNBRG00000003943	cpsf4	98	79.668	Neolamprologus_brichardi
ENSRROG00000040431	CPSF4	100	100.000	ENSNLEG00000011074	CPSF4	100	100.000	Nomascus_leucogenys
ENSRROG00000040431	CPSF4	100	88.848	ENSMEUG00000006955	CPSF4	100	88.848	Notamacropus_eugenii
ENSRROG00000040431	CPSF4	100	89.591	ENSOPRG00000013663	CPSF4	100	89.591	Ochotona_princeps
ENSRROG00000040431	CPSF4	100	72.797	ENSODEG00000009779	-	100	72.797	Octodon_degus
ENSRROG00000040431	CPSF4	100	99.052	ENSODEG00000011181	-	100	99.052	Octodon_degus
ENSRROG00000040431	CPSF4	98	84.583	ENSODEG00000018283	-	91	84.583	Octodon_degus
ENSRROG00000040431	CPSF4	100	80.377	ENSONIG00000008495	cpsf4	100	80.377	Oreochromis_niloticus
ENSRROG00000040431	CPSF4	86	86.752	ENSOANG00000007729	CPSF4	100	86.752	Ornithorhynchus_anatinus
ENSRROG00000040431	CPSF4	100	52.878	ENSOANG00000009568	-	100	52.518	Ornithorhynchus_anatinus
ENSRROG00000040431	CPSF4	100	89.591	ENSOCUG00000002437	CPSF4	70	89.591	Oryctolagus_cuniculus
ENSRROG00000040431	CPSF4	100	80.377	ENSORLG00000022798	cpsf4	100	80.377	Oryzias_latipes
ENSRROG00000040431	CPSF4	100	80.377	ENSORLG00020008548	cpsf4	100	80.377	Oryzias_latipes_hni
ENSRROG00000040431	CPSF4	100	80.000	ENSORLG00015019575	cpsf4	100	80.000	Oryzias_latipes_hsok
ENSRROG00000040431	CPSF4	100	83.886	ENSOMEG00000005176	cpsf4	100	83.886	Oryzias_melastigma
ENSRROG00000040431	CPSF4	100	90.335	ENSOGAG00000010884	CPSF4	100	90.335	Otolemur_garnettii
ENSRROG00000040431	CPSF4	100	78.755	ENSOARG00000018668	CPSF4	100	77.656	Ovis_aries
ENSRROG00000040431	CPSF4	100	99.526	ENSPPAG00000043355	CPSF4	100	99.526	Pan_paniscus
ENSRROG00000040431	CPSF4	100	99.052	ENSPPRG00000003134	CPSF4	100	99.052	Panthera_pardus
ENSRROG00000040431	CPSF4	87	98.913	ENSPTIG00000005604	CPSF4	87	98.913	Panthera_tigris_altaica
ENSRROG00000040431	CPSF4	100	99.526	ENSPTRG00000019453	CPSF4	100	99.526	Pan_troglodytes
ENSRROG00000040431	CPSF4	100	100.000	ENSPANG00000023123	CPSF4	100	100.000	Papio_anubis
ENSRROG00000040431	CPSF4	100	80.657	ENSPKIG00000014278	cpsf4	100	80.657	Paramormyrops_kingsleyae
ENSRROG00000040431	CPSF4	78	81.944	ENSPSIG00000011229	CPSF4	100	84.259	Pelodiscus_sinensis
ENSRROG00000040431	CPSF4	79	65.306	ENSPSIG00000018198	-	100	64.767	Pelodiscus_sinensis
ENSRROG00000040431	CPSF4	100	80.328	ENSPMGG00000017735	cpsf4	100	78.862	Periophthalmus_magnuspinnatus
ENSRROG00000040431	CPSF4	100	99.052	ENSPEMG00000004508	Cpsf4	100	99.052	Peromyscus_maniculatus_bairdii
ENSRROG00000040431	CPSF4	100	88.848	ENSPCIG00000024776	CPSF4	100	88.848	Phascolarctos_cinereus
ENSRROG00000040431	CPSF4	100	79.924	ENSPFOG00000014912	cpsf4	100	79.924	Poecilia_formosa
ENSRROG00000040431	CPSF4	100	79.675	ENSPLAG00000009599	cpsf4	100	78.862	Poecilia_latipinna
ENSRROG00000040431	CPSF4	100	79.924	ENSPMEG00000009790	cpsf4	100	79.924	Poecilia_mexicana
ENSRROG00000040431	CPSF4	100	79.167	ENSPREG00000018166	cpsf4	100	76.718	Poecilia_reticulata
ENSRROG00000040431	CPSF4	86	88.462	ENSPPYG00000017378	CPSF4	100	88.462	Pongo_abelii
ENSRROG00000040431	CPSF4	100	88.848	ENSPCAG00000001892	CPSF4	100	88.848	Procavia_capensis
ENSRROG00000040431	CPSF4	100	99.052	ENSPCOG00000012771	CPSF4	100	99.052	Propithecus_coquereli
ENSRROG00000040431	CPSF4	100	83.271	ENSPVAG00000007531	CPSF4	100	83.271	Pteropus_vampyrus
ENSRROG00000040431	CPSF4	100	80.377	ENSPNYG00000018559	cpsf4	100	80.377	Pundamilia_nyererei
ENSRROG00000040431	CPSF4	100	81.481	ENSPNAG00000003736	cpsf4	100	81.852	Pygocentrus_nattereri
ENSRROG00000040431	CPSF4	100	99.052	ENSRNOG00000000985	Cpsf4	100	99.052	Rattus_norvegicus
ENSRROG00000040431	CPSF4	83	100.000	ENSRBIG00000033886	CPSF4	100	100.000	Rhinopithecus_bieti
ENSRROG00000040431	CPSF4	100	100.000	ENSSBOG00000020493	CPSF4	100	100.000	Saimiri_boliviensis_boliviensis
ENSRROG00000040431	CPSF4	100	88.848	ENSSHAG00000011533	CPSF4	100	88.848	Sarcophilus_harrisii
ENSRROG00000040431	CPSF4	100	81.884	ENSSFOG00015007883	cpsf4	100	81.884	Scleropages_formosus
ENSRROG00000040431	CPSF4	100	86.235	ENSSMAG00000006374	cpsf4	100	86.235	Scophthalmus_maximus
ENSRROG00000040431	CPSF4	100	80.075	ENSSDUG00000018887	cpsf4	100	80.524	Seriola_dumerili
ENSRROG00000040431	CPSF4	100	80.075	ENSSLDG00000019078	cpsf4	100	81.273	Seriola_lalandi_dorsalis
ENSRROG00000040431	CPSF4	86	88.889	ENSSARG00000012416	CPSF4	100	88.889	Sorex_araneus
ENSRROG00000040431	CPSF4	100	85.874	ENSSPUG00000003549	CPSF4	100	84.387	Sphenodon_punctatus
ENSRROG00000040431	CPSF4	95	64.807	ENSSPUG00000014803	-	97	64.135	Sphenodon_punctatus
ENSRROG00000040431	CPSF4	100	87.295	ENSSPAG00000006174	cpsf4	100	87.295	Stegastes_partitus
ENSRROG00000040431	CPSF4	100	99.590	ENSSSCG00000026896	CPSF4	100	99.590	Sus_scrofa
ENSRROG00000040431	CPSF4	100	93.902	ENSTGUG00000007552	CPSF4	100	93.902	Taeniopygia_guttata
ENSRROG00000040431	CPSF4	100	79.087	ENSTRUG00000024220	cpsf4	100	79.087	Takifugu_rubripes
ENSRROG00000040431	CPSF4	100	78.707	ENSTNIG00000006265	cpsf4	100	79.468	Tetraodon_nigroviridis
ENSRROG00000040431	CPSF4	86	76.923	ENSTBEG00000011406	CPSF4	100	77.350	Tupaia_belangeri
ENSRROG00000040431	CPSF4	100	78.810	ENSTTRG00000003007	CPSF4	100	78.810	Tursiops_truncatus
ENSRROG00000040431	CPSF4	94	97.845	ENSUAMG00000008051	CPSF4	89	97.845	Ursus_americanus
ENSRROG00000040431	CPSF4	100	98.770	ENSUMAG00000009474	CPSF4	100	98.770	Ursus_maritimus
ENSRROG00000040431	CPSF4	100	98.770	ENSVVUG00000008824	CPSF4	100	98.770	Vulpes_vulpes
ENSRROG00000040431	CPSF4	100	79.928	ENSXETG00000009892	cpsf4	100	79.211	Xenopus_tropicalis
ENSRROG00000040431	CPSF4	99	60.526	ENSXETG00000004641	cpsf4l	99	60.526	Xenopus_tropicalis
ENSRROG00000040431	CPSF4	100	83.886	ENSXCOG00000016040	cpsf4	100	83.886	Xiphophorus_couchianus
ENSRROG00000040431	CPSF4	100	79.924	ENSXMAG00000024670	cpsf4	100	79.924	Xiphophorus_maculatus