EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSRROG00000040935 (Gene tree)
Gene ID: -
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Rhinopithecus_roxellana
Status: putative
Strand: Plus strand
Length: 23277 bases
Position: chrKN298958.1:918629-941905
Accession: 104680634
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRROP00000034798	UPF1_Zn_bind	PF09416.10	9.9e-75	1	1
ENSRROP00000034811	UPF1_Zn_bind	PF09416.10	8.4e-24	1	1
ENSRROP00000034815	UPF1_Zn_bind	PF09416.10	8.4e-24	1	1
ENSRROP00000034811	ResIII	PF04851.15	2.9e-05	1	1
ENSRROP00000034815	ResIII	PF04851.15	2.9e-05	1	1
ENSRROP00000034798	ResIII	PF04851.15	3.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRROT00000059248	UPF1-201	3240	-	ENSRROP00000034798	1079 (aa)	-	A0A2K6R187
ENSRROT00000059261	UPF1-202	5917	-	ENSRROP00000034811	933 (aa)	-	A0A2K6R1B5
ENSRROT00000059265	UPF1-203	5493	XM_010386669	ENSRROP00000034815	933 (aa)	XP_010384971	A0A2K6R1B5

Gene Model

Click here to download ENSRROG00000040935's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRROG00000040935's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRROG00000040935	UPF1	99	99.252	ENSG00000005007	UPF1	95	99.252	Homo_sapiens
ENSRROG00000040935	UPF1	98	94.645	ENSAPOG00000010916	-	95	93.922	Acanthochromis_polyacanthus
ENSRROG00000040935	UPF1	98	93.137	ENSAPOG00000023773	upf1	95	92.519	Acanthochromis_polyacanthus
ENSRROG00000040935	UPF1	99	98.050	ENSAMEG00000011474	UPF1	96	98.050	Ailuropoda_melanoleuca
ENSRROG00000040935	UPF1	98	94.414	ENSACIG00000010985	-	100	94.112	Amphilophus_citrinellus
ENSRROG00000040935	UPF1	98	92.818	ENSACIG00000019949	upf1	95	92.519	Amphilophus_citrinellus
ENSRROG00000040935	UPF1	98	94.645	ENSAOCG00000006352	-	100	91.426	Amphiprion_ocellaris
ENSRROG00000040935	UPF1	98	92.552	ENSAOCG00000018519	upf1	95	92.502	Amphiprion_ocellaris
ENSRROG00000040935	UPF1	98	92.552	ENSAPEG00000016344	upf1	95	92.502	Amphiprion_percula
ENSRROG00000040935	UPF1	98	94.645	ENSAPEG00000006292	-	100	91.426	Amphiprion_percula
ENSRROG00000040935	UPF1	98	94.645	ENSATEG00000016606	-	95	93.922	Anabas_testudineus
ENSRROG00000040935	UPF1	98	91.515	ENSATEG00000017867	upf1	95	91.862	Anabas_testudineus
ENSRROG00000040935	UPF1	98	97.727	ENSAPLG00000009175	UPF1	99	98.192	Anas_platyrhynchos
ENSRROG00000040935	UPF1	99	97.034	ENSANAG00000024107	UPF1	98	97.034	Aotus_nancymaae
ENSRROG00000040935	UPF1	98	94.317	ENSACLG00000022630	-	95	93.726	Astatotilapia_calliptera
ENSRROG00000040935	UPF1	98	92.601	ENSACLG00000007181	upf1	95	92.330	Astatotilapia_calliptera
ENSRROG00000040935	UPF1	98	94.978	ENSAMXG00000042187	upf1	95	94.777	Astyanax_mexicanus
ENSRROG00000040935	UPF1	99	98.784	ENSBTAG00000020922	UPF1	95	98.784	Bos_taurus
ENSRROG00000040935	UPF1	84	54.088	WBGene00004880	smg-2	94	50.145	Caenorhabditis_elegans
ENSRROG00000040935	UPF1	99	99.252	ENSCJAG00000019627	UPF1	95	99.252	Callithrix_jacchus
ENSRROG00000040935	UPF1	99	98.693	ENSCAFG00000014578	UPF1	95	98.693	Canis_familiaris
ENSRROG00000040935	UPF1	98	99.671	ENSCAFG00020012347	UPF1	95	97.666	Canis_lupus_dingo
ENSRROG00000040935	UPF1	99	98.785	ENSCHIG00000011018	UPF1	95	98.785	Capra_hircus
ENSRROG00000040935	UPF1	99	98.689	ENSTSYG00000008877	UPF1	99	98.689	Carlito_syrichta
ENSRROG00000040935	UPF1	99	97.300	ENSCAPG00000005758	UPF1	97	97.300	Cavia_aperea
ENSRROG00000040935	UPF1	97	98.760	ENSCPOG00000025463	UPF1	94	98.760	Cavia_porcellus
ENSRROG00000040935	UPF1	99	99.252	ENSCCAG00000032175	UPF1	95	99.252	Cebus_capucinus
ENSRROG00000040935	UPF1	99	98.231	ENSCATG00000040306	UPF1	99	98.231	Cercocebus_atys
ENSRROG00000040935	UPF1	99	98.596	ENSCLAG00000004037	UPF1	100	99.620	Chinchilla_lanigera
ENSRROG00000040935	UPF1	98	99.781	ENSCSAG00000005276	UPF1	95	98.037	Chlorocebus_sabaeus
ENSRROG00000040935	UPF1	98	98.362	ENSCPBG00000012513	UPF1	95	96.549	Chrysemys_picta_bellii
ENSRROG00000040935	UPF1	71	83.934	ENSCING00000021399	-	91	82.497	Ciona_intestinalis
ENSRROG00000040935	UPF1	98	74.351	ENSCSAVG00000006533	-	94	73.415	Ciona_savignyi
ENSRROG00000040935	UPF1	100	99.907	ENSCANG00000029819	UPF1	100	99.907	Colobus_angolensis_palliatus
ENSRROG00000040935	UPF1	98	98.795	ENSCGRG00001021067	Upf1	95	97.196	Cricetulus_griseus_chok1gshd
ENSRROG00000040935	UPF1	99	98.126	ENSCGRG00000013480	Upf1	99	98.126	Cricetulus_griseus_crigri
ENSRROG00000040935	UPF1	98	87.322	ENSCSEG00000017239	upf1	94	87.417	Cynoglossus_semilaevis
ENSRROG00000040935	UPF1	98	94.639	ENSCSEG00000016159	-	95	93.821	Cynoglossus_semilaevis
ENSRROG00000040935	UPF1	98	94.536	ENSCVAG00000010561	upf1	95	93.637	Cyprinodon_variegatus
ENSRROG00000040935	UPF1	98	94.869	ENSDARG00000016302	upf1	95	94.587	Danio_rerio
ENSRROG00000040935	UPF1	99	95.798	ENSDORG00000009984	Upf1	97	95.798	Dipodomys_ordii
ENSRROG00000040935	UPF1	82	73.631	FBgn0030354	Upf1	80	69.650	Drosophila_melanogaster
ENSRROG00000040935	UPF1	52	87.971	ENSEBUG00000010069	upf1	89	88.727	Eptatretus_burgeri
ENSRROG00000040935	UPF1	98	99.562	ENSEASG00005006549	UPF1	96	96.942	Equus_asinus_asinus
ENSRROG00000040935	UPF1	98	99.562	ENSECAG00000010639	UPF1	96	96.942	Equus_caballus
ENSRROG00000040935	UPF1	98	91.857	ENSELUG00000020917	upf1	95	91.777	Esox_lucius
ENSRROG00000040935	UPF1	98	93.601	ENSELUG00000012916	-	95	93.019	Esox_lucius
ENSRROG00000040935	UPF1	99	98.599	ENSFCAG00000009757	UPF1	95	98.599	Felis_catus
ENSRROG00000040935	UPF1	98	98.687	ENSFALG00000009312	UPF1	98	96.007	Ficedula_albicollis
ENSRROG00000040935	UPF1	98	99.525	ENSFDAG00000014816	UPF1	100	99.525	Fukomys_damarensis
ENSRROG00000040935	UPF1	98	90.476	ENSFHEG00000006428	upf1	94	89.454	Fundulus_heteroclitus
ENSRROG00000040935	UPF1	88	96.310	ENSFHEG00000016276	-	96	93.829	Fundulus_heteroclitus
ENSRROG00000040935	UPF1	98	92.765	ENSGMOG00000007541	upf1	95	94.017	Gadus_morhua
ENSRROG00000040935	UPF1	98	98.905	ENSGALG00000003220	UPF1	95	96.558	Gallus_gallus
ENSRROG00000040935	UPF1	98	94.420	ENSGAFG00000004831	upf1	95	93.536	Gambusia_affinis
ENSRROG00000040935	UPF1	74	95.389	ENSGAFG00000015443	-	88	93.026	Gambusia_affinis
ENSRROG00000040935	UPF1	98	98.795	ENSGAGG00000022217	UPF1	96	96.732	Gopherus_agassizii
ENSRROG00000040935	UPF1	98	99.781	ENSGGOG00000002608	UPF1	99	98.955	Gorilla_gorilla
ENSRROG00000040935	UPF1	84	100.000	ENSHBUG00000008939	upf1	89	100.000	Haplochromis_burtoni
ENSRROG00000040935	UPF1	86	87.430	ENSHBUG00000014694	upf1	90	86.207	Haplochromis_burtoni
ENSRROG00000040935	UPF1	99	98.411	ENSHGLG00000010900	UPF1	95	98.411	Heterocephalus_glaber_female
ENSRROG00000040935	UPF1	99	95.926	ENSHGLG00100005904	UPF1	99	95.926	Heterocephalus_glaber_male
ENSRROG00000040935	UPF1	98	93.545	ENSHCOG00000008918	upf1	100	92.823	Hippocampus_comes
ENSRROG00000040935	UPF1	98	95.306	ENSIPUG00000005108	UPF1	95	95.157	Ictalurus_punctatus
ENSRROG00000040935	UPF1	99	98.879	ENSSTOG00000009196	UPF1	95	98.879	Ictidomys_tridecemlineatus
ENSRROG00000040935	UPF1	99	98.131	ENSJJAG00000023151	Upf1	95	98.131	Jaculus_jaculus
ENSRROG00000040935	UPF1	98	94.754	ENSKMAG00000004962	upf1	95	93.922	Kryptolebias_marmoratus
ENSRROG00000040935	UPF1	98	94.432	ENSLBEG00000027848	-	95	93.732	Labrus_bergylta
ENSRROG00000040935	UPF1	98	91.173	ENSLBEG00000014862	upf1	95	91.846	Labrus_bergylta
ENSRROG00000040935	UPF1	75	97.274	ENSLACG00000008482	UPF1	100	97.274	Latimeria_chalumnae
ENSRROG00000040935	UPF1	98	97.155	ENSLOCG00000002072	upf1	95	96.293	Lepisosteus_oculatus
ENSRROG00000040935	UPF1	99	98.410	ENSLAFG00000014963	UPF1	95	98.410	Loxodonta_africana
ENSRROG00000040935	UPF1	99	99.252	ENSMFAG00000037748	UPF1	95	99.252	Macaca_fascicularis
ENSRROG00000040935	UPF1	99	99.252	ENSMMUG00000023286	UPF1	95	99.252	Macaca_mulatta
ENSRROG00000040935	UPF1	99	99.252	ENSMNEG00000000046	UPF1	95	99.252	Macaca_nemestrina
ENSRROG00000040935	UPF1	97	100.000	ENSMLEG00000028404	UPF1	100	100.000	Mandrillus_leucophaeus
ENSRROG00000040935	UPF1	98	93.668	ENSMAMG00000006231	-	95	93.637	Mastacembelus_armatus
ENSRROG00000040935	UPF1	98	91.407	ENSMAMG00000006229	upf1	95	91.862	Mastacembelus_armatus
ENSRROG00000040935	UPF1	98	91.309	ENSMZEG00005003489	upf1	95	92.105	Maylandia_zebra
ENSRROG00000040935	UPF1	98	94.317	ENSMZEG00005016386	-	95	93.726	Maylandia_zebra
ENSRROG00000040935	UPF1	98	97.189	ENSMGAG00000004745	UPF1	100	97.719	Meleagris_gallopavo
ENSRROG00000040935	UPF1	97	99.049	ENSMAUG00000011398	Upf1	95	99.049	Mesocricetus_auratus
ENSRROG00000040935	UPF1	98	99.452	ENSMICG00000001659	UPF1	95	97.944	Microcebus_murinus
ENSRROG00000040935	UPF1	99	97.677	ENSMOCG00000005699	Upf1	96	97.677	Microtus_ochrogaster
ENSRROG00000040935	UPF1	98	92.662	ENSMMOG00000007881	upf1	94	92.564	Mola_mola
ENSRROG00000040935	UPF1	98	92.131	ENSMMOG00000007537	-	99	91.643	Mola_mola
ENSRROG00000040935	UPF1	99	98.039	ENSMODG00000003689	UPF1	95	98.039	Monodelphis_domestica
ENSRROG00000040935	UPF1	98	92.552	ENSMALG00000000144	upf1	95	92.198	Monopterus_albus
ENSRROG00000040935	UPF1	98	93.145	ENSMALG00000018100	-	95	92.628	Monopterus_albus
ENSRROG00000040935	UPF1	99	98.131	MGP_CAROLIEiJ_G0031142	Upf1	95	98.131	Mus_caroli
ENSRROG00000040935	UPF1	99	98.131	ENSMUSG00000058301	Upf1	95	98.131	Mus_musculus
ENSRROG00000040935	UPF1	99	98.131	MGP_PahariEiJ_G0021607	Upf1	95	98.131	Mus_pahari
ENSRROG00000040935	UPF1	99	98.131	MGP_SPRETEiJ_G0032260	Upf1	95	98.131	Mus_spretus
ENSRROG00000040935	UPF1	98	99.671	ENSMPUG00000015516	UPF1	95	97.666	Mustela_putorius_furo
ENSRROG00000040935	UPF1	98	99.452	ENSMLUG00000012122	UPF1	95	97.300	Myotis_lucifugus
ENSRROG00000040935	UPF1	99	98.131	ENSNGAG00000024107	Upf1	95	98.131	Nannospalax_galili
ENSRROG00000040935	UPF1	98	90.533	ENSNBRG00000000670	upf1	95	90.530	Neolamprologus_brichardi
ENSRROG00000040935	UPF1	98	93.122	ENSNBRG00000022069	-	100	92.885	Neolamprologus_brichardi
ENSRROG00000040935	UPF1	97	94.202	ENSNLEG00000006062	UPF1	100	94.202	Nomascus_leucogenys
ENSRROG00000040935	UPF1	80	94.314	ENSMEUG00000014146	-	77	94.314	Notamacropus_eugenii
ENSRROG00000040935	UPF1	98	90.471	ENSOPRG00000014018	UPF1	100	90.589	Ochotona_princeps
ENSRROG00000040935	UPF1	99	98.689	ENSODEG00000012426	UPF1	96	98.689	Octodon_degus
ENSRROG00000040935	UPF1	98	91.631	ENSONIG00000010452	upf1	95	92.387	Oreochromis_niloticus
ENSRROG00000040935	UPF1	98	94.426	ENSONIG00000012729	-	95	93.821	Oreochromis_niloticus
ENSRROG00000040935	UPF1	99	97.577	ENSOANG00000004568	UPF1	95	97.577	Ornithorhynchus_anatinus
ENSRROG00000040935	UPF1	98	94.754	ENSORLG00000008453	upf1	95	93.542	Oryzias_latipes
ENSRROG00000040935	UPF1	98	94.754	ENSORLG00020014758	upf1	95	93.542	Oryzias_latipes_hni
ENSRROG00000040935	UPF1	98	94.754	ENSORLG00015010165	upf1	100	89.692	Oryzias_latipes_hsok
ENSRROG00000040935	UPF1	98	94.863	ENSOMEG00000003665	upf1	95	93.637	Oryzias_melastigma
ENSRROG00000040935	UPF1	98	99.671	ENSOGAG00000012866	UPF1	95	98.131	Otolemur_garnettii
ENSRROG00000040935	UPF1	94	99.408	ENSOARG00000010739	UPF1	93	99.408	Ovis_aries
ENSRROG00000040935	UPF1	99	99.722	ENSPPAG00000043884	UPF1	98	99.722	Pan_paniscus
ENSRROG00000040935	UPF1	99	98.599	ENSPPRG00000023470	UPF1	95	98.599	Panthera_pardus
ENSRROG00000040935	UPF1	98	97.262	ENSPTIG00000010159	UPF1	99	96.575	Panthera_tigris_altaica
ENSRROG00000040935	UPF1	99	99.252	ENSPTRG00000010721	UPF1	95	99.252	Pan_troglodytes
ENSRROG00000040935	UPF1	99	99.252	ENSPANG00000008847	UPF1	95	99.252	Papio_anubis
ENSRROG00000040935	UPF1	91	93.529	ENSPKIG00000006069	upf1	94	93.529	Paramormyrops_kingsleyae
ENSRROG00000040935	UPF1	82	97.908	ENSPSIG00000009491	UPF1	100	97.908	Pelodiscus_sinensis
ENSRROG00000040935	UPF1	98	91.503	ENSPMGG00000017327	upf1	95	90.634	Periophthalmus_magnuspinnatus
ENSRROG00000040935	UPF1	99	98.224	ENSPEMG00000001085	Upf1	95	98.224	Peromyscus_maniculatus_bairdii
ENSRROG00000040935	UPF1	98	89.434	ENSPMAG00000001206	upf1	94	89.068	Petromyzon_marinus
ENSRROG00000040935	UPF1	98	98.905	ENSPCIG00000006156	UPF1	95	97.012	Phascolarctos_cinereus
ENSRROG00000040935	UPF1	98	94.530	ENSPLAG00000016232	-	95	93.631	Poecilia_latipinna
ENSRROG00000040935	UPF1	98	91.667	ENSPLAG00000018155	-	95	90.584	Poecilia_latipinna
ENSRROG00000040935	UPF1	98	94.426	ENSPMEG00000016319	-	95	93.726	Poecilia_mexicana
ENSRROG00000040935	UPF1	98	92.358	ENSPMEG00000011443	-	95	91.176	Poecilia_mexicana
ENSRROG00000040935	UPF1	98	94.311	ENSPREG00000011247	-	95	93.441	Poecilia_reticulata
ENSRROG00000040935	UPF1	98	92.208	ENSPREG00000009940	upf1	94	91.149	Poecilia_reticulata
ENSRROG00000040935	UPF1	99	94.019	ENSPPYG00000009752	UPF1	95	94.019	Pongo_abelii
ENSRROG00000040935	UPF1	69	100.000	ENSPCAG00000012962	UPF1	65	100.000	Procavia_capensis
ENSRROG00000040935	UPF1	99	98.692	ENSPCOG00000023813	UPF1	95	98.692	Propithecus_coquereli
ENSRROG00000040935	UPF1	66	100.000	ENSPVAG00000003183	UPF1	64	100.000	Pteropus_vampyrus
ENSRROG00000040935	UPF1	98	94.317	ENSPNYG00000016731	-	95	93.726	Pundamilia_nyererei
ENSRROG00000040935	UPF1	98	91.309	ENSPNYG00000003694	upf1	95	92.105	Pundamilia_nyererei
ENSRROG00000040935	UPF1	98	95.087	ENSPNAG00000025614	upf1	95	94.777	Pygocentrus_nattereri
ENSRROG00000040935	UPF1	99	98.131	ENSRNOG00000020134	Upf1	95	98.131	Rattus_norvegicus
ENSRROG00000040935	UPF1	100	100.000	ENSRBIG00000013894	UPF1	100	100.000	Rhinopithecus_bieti
ENSRROG00000040935	UPF1	76	57.283	YMR080C	NAM7	84	56.348	Saccharomyces_cerevisiae
ENSRROG00000040935	UPF1	99	98.422	ENSSBOG00000023632	UPF1	99	98.422	Saimiri_boliviensis_boliviensis
ENSRROG00000040935	UPF1	97	98.860	ENSSHAG00000010499	UPF1	100	98.860	Sarcophilus_harrisii
ENSRROG00000040935	UPF1	98	97.046	ENSSFOG00015021095	upf1	99	96.198	Scleropages_formosus
ENSRROG00000040935	UPF1	98	94.432	ENSSMAG00000021018	-	95	93.922	Scophthalmus_maximus
ENSRROG00000040935	UPF1	98	91.066	ENSSMAG00000005055	upf1	95	91.105	Scophthalmus_maximus
ENSRROG00000040935	UPF1	98	91.515	ENSSDUG00000013320	upf1	95	92.049	Seriola_dumerili
ENSRROG00000040935	UPF1	98	94.651	ENSSDUG00000009629	-	95	94.112	Seriola_dumerili
ENSRROG00000040935	UPF1	98	94.651	ENSSLDG00000006878	-	95	94.112	Seriola_lalandi_dorsalis
ENSRROG00000040935	UPF1	98	92.508	ENSSLDG00000020868	upf1	95	92.366	Seriola_lalandi_dorsalis
ENSRROG00000040935	UPF1	98	98.795	ENSSPUG00000010538	UPF1	95	96.632	Sphenodon_punctatus
ENSRROG00000040935	UPF1	98	93.764	ENSSPAG00000000003	upf1	95	90.142	Stegastes_partitus
ENSRROG00000040935	UPF1	98	94.858	ENSSPAG00000011521	-	95	94.011	Stegastes_partitus
ENSRROG00000040935	UPF1	99	98.690	ENSSSCG00000039301	UPF1	99	98.668	Sus_scrofa
ENSRROG00000040935	UPF1	80	91.425	ENSTGUG00000001057	UPF1	90	96.700	Taeniopygia_guttata
ENSRROG00000040935	UPF1	98	93.545	ENSTRUG00000005131	-	95	92.871	Takifugu_rubripes
ENSRROG00000040935	UPF1	98	92.990	ENSTRUG00000000150	upf1	95	91.912	Takifugu_rubripes
ENSRROG00000040935	UPF1	97	99.229	ENSTTRG00000011544	UPF1	93	94.862	Tursiops_truncatus
ENSRROG00000040935	UPF1	98	99.671	ENSUAMG00000007093	UPF1	95	97.572	Ursus_americanus
ENSRROG00000040935	UPF1	99	98.688	ENSUMAG00000006652	UPF1	99	98.769	Ursus_maritimus
ENSRROG00000040935	UPF1	98	99.671	ENSVVUG00000007797	UPF1	95	97.666	Vulpes_vulpes
ENSRROG00000040935	UPF1	97	83.602	ENSXETG00000013602	upf1	93	83.602	Xenopus_tropicalis
ENSRROG00000040935	UPF1	94	92.132	ENSXCOG00000015275	-	91	90.837	Xiphophorus_couchianus
ENSRROG00000040935	UPF1	98	94.420	ENSXCOG00000005764	-	100	93.858	Xiphophorus_couchianus
ENSRROG00000040935	UPF1	98	94.317	ENSXMAG00000002540	-	95	93.536	Xiphophorus_maculatus
ENSRROG00000040935	UPF1	98	92.232	ENSXMAG00000001703	-	95	91.065	Xiphophorus_maculatus