EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSRROG00000043547 (Gene tree)
Gene ID: 104664888
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Rhinopithecus_roxellana
Status: putative
Strand: Plus strand
Length: 133010 bases
Position: chrKN296079.1:1049962-1182971
Accession: 104664888
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRROP00000040630	Upf2	PF04050.14	7.9e-33	1	1
ENSRROP00000040637	Upf2	PF04050.14	1.3e-32	1	1
ENSRROP00000040637	MIF4G	PF02854.19	1.7e-80	1	3
ENSRROP00000040637	MIF4G	PF02854.19	1.7e-80	2	3
ENSRROP00000040637	MIF4G	PF02854.19	1.7e-80	3	3
ENSRROP00000040630	MIF4G	PF02854.19	1.7e-80	1	3
ENSRROP00000040630	MIF4G	PF02854.19	1.7e-80	2	3
ENSRROP00000040630	MIF4G	PF02854.19	1.7e-80	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRROT00000065121	UPF2-201	5672	XM_010366572	ENSRROP00000040630	1271 (aa)	XP_010364874	A0A2K6RI04
ENSRROT00000065128	UPF2-202	3789	-	ENSRROP00000040637	1262 (aa)	-	A0A2K6RHW0

Gene Model

Click here to download ENSRROG00000043547's gene model file

Pathways

Pathway ID	Pathway Name	Source
rro03013	RNA transport	KEGG
rro03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRROG00000043547's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRROG00000043547	UPF2	100	99.450	ENSG00000151461	UPF2	100	99.450	Homo_sapiens
ENSRROG00000043547	UPF2	99	78.230	ENSAPOG00000015837	UPF2	100	78.152	Acanthochromis_polyacanthus
ENSRROG00000043547	UPF2	100	97.720	ENSAMEG00000004586	UPF2	100	97.720	Ailuropoda_melanoleuca
ENSRROG00000043547	UPF2	99	82.279	ENSACIG00000018078	UPF2	100	82.279	Amphilophus_citrinellus
ENSRROG00000043547	UPF2	100	82.307	ENSAOCG00000016766	UPF2	100	82.385	Amphiprion_ocellaris
ENSRROG00000043547	UPF2	100	82.385	ENSAPEG00000019084	UPF2	100	82.463	Amphiprion_percula
ENSRROG00000043547	UPF2	100	82.207	ENSATEG00000021677	UPF2	99	82.490	Anabas_testudineus
ENSRROG00000043547	UPF2	100	86.861	ENSAPLG00000010287	UPF2	100	86.625	Anas_platyrhynchos
ENSRROG00000043547	UPF2	100	91.903	ENSACAG00000009259	UPF2	100	91.588	Anolis_carolinensis
ENSRROG00000043547	UPF2	99	88.601	ENSANAG00000028451	UPF2	99	86.950	Aotus_nancymaae
ENSRROG00000043547	UPF2	100	80.748	ENSACLG00000012696	UPF2	100	82.541	Astatotilapia_calliptera
ENSRROG00000043547	UPF2	99	82.864	ENSAMXG00000013700	UPF2	99	82.942	Astyanax_mexicanus
ENSRROG00000043547	UPF2	100	97.642	ENSBTAG00000000288	UPF2	100	97.642	Bos_taurus
ENSRROG00000043547	UPF2	100	99.135	ENSCJAG00000020685	UPF2	100	99.135	Callithrix_jacchus
ENSRROG00000043547	UPF2	100	97.720	ENSCAFG00000004839	UPF2	100	97.720	Canis_familiaris
ENSRROG00000043547	UPF2	100	96.355	ENSCAFG00020005882	UPF2	100	96.355	Canis_lupus_dingo
ENSRROG00000043547	UPF2	100	97.720	ENSCHIG00000020359	UPF2	100	97.720	Capra_hircus
ENSRROG00000043547	UPF2	100	97.877	ENSTSYG00000000935	UPF2	100	97.877	Carlito_syrichta
ENSRROG00000043547	UPF2	91	86.242	ENSCAPG00000016658	UPF2	100	85.796	Cavia_aperea
ENSRROG00000043547	UPF2	99	93.185	ENSCPOG00000008809	UPF2	99	94.453	Cavia_porcellus
ENSRROG00000043547	UPF2	100	93.553	ENSCCAG00000035991	UPF2	100	93.553	Cebus_capucinus
ENSRROG00000043547	UPF2	100	99.843	ENSCATG00000032679	UPF2	100	99.843	Cercocebus_atys
ENSRROG00000043547	UPF2	100	97.170	ENSCLAG00000011434	UPF2	100	97.170	Chinchilla_lanigera
ENSRROG00000043547	UPF2	100	99.764	ENSCSAG00000013372	UPF2	100	99.764	Chlorocebus_sabaeus
ENSRROG00000043547	UPF2	87	99.554	ENSCHOG00000000422	UPF2	89	99.554	Choloepus_hoffmanni
ENSRROG00000043547	UPF2	99	92.598	ENSCPBG00000027823	UPF2	100	92.283	Chrysemys_picta_bellii
ENSRROG00000043547	UPF2	79	49.264	ENSCSAVG00000007772	-	79	50.446	Ciona_savignyi
ENSRROG00000043547	UPF2	100	96.754	ENSCANG00000040396	UPF2	100	96.754	Colobus_angolensis_palliatus
ENSRROG00000043547	UPF2	100	97.561	ENSCGRG00001019347	Upf2	100	97.561	Cricetulus_griseus_chok1gshd
ENSRROG00000043547	UPF2	100	97.561	ENSCGRG00000017993	Upf2	100	97.561	Cricetulus_griseus_crigri
ENSRROG00000043547	UPF2	91	80.637	ENSCSEG00000003520	UPF2	99	77.795	Cynoglossus_semilaevis
ENSRROG00000043547	UPF2	99	81.868	ENSCVAG00000006167	UPF2	100	81.711	Cyprinodon_variegatus
ENSRROG00000043547	UPF2	100	97.720	ENSDNOG00000018160	UPF2	100	97.720	Dasypus_novemcinctus
ENSRROG00000043547	UPF2	100	97.168	ENSDORG00000002478	Upf2	100	97.168	Dipodomys_ordii
ENSRROG00000043547	UPF2	89	36.439	FBgn0029992	Upf2	83	43.860	Drosophila_melanogaster
ENSRROG00000043547	UPF2	72	100.000	ENSETEG00000011583	-	72	100.000	Echinops_telfairi
ENSRROG00000043547	UPF2	65	72.483	ENSEBUG00000012448	-	87	72.483	Eptatretus_burgeri
ENSRROG00000043547	UPF2	100	97.720	ENSEASG00005019274	UPF2	100	99.074	Equus_asinus_asinus
ENSRROG00000043547	UPF2	100	97.799	ENSECAG00000017022	UPF2	100	97.799	Equus_caballus
ENSRROG00000043547	UPF2	82	93.610	ENSEEUG00000007819	UPF2	82	93.291	Erinaceus_europaeus
ENSRROG00000043547	UPF2	99	80.718	ENSELUG00000012014	UPF2	100	81.444	Esox_lucius
ENSRROG00000043547	UPF2	100	99.448	ENSFCAG00000005785	UPF2	100	97.563	Felis_catus
ENSRROG00000043547	UPF2	100	90.409	ENSFALG00000001889	UPF2	98	92.610	Ficedula_albicollis
ENSRROG00000043547	UPF2	100	97.168	ENSFDAG00000014348	UPF2	100	97.168	Fukomys_damarensis
ENSRROG00000043547	UPF2	99	82.104	ENSFHEG00000009826	UPF2	100	82.075	Fundulus_heteroclitus
ENSRROG00000043547	UPF2	91	84.010	ENSGMOG00000005557	UPF2	100	80.094	Gadus_morhua
ENSRROG00000043547	UPF2	100	92.459	ENSGALG00000033772	UPF2	100	92.930	Gallus_gallus
ENSRROG00000043547	UPF2	100	79.267	ENSGAFG00000020867	UPF2	100	81.138	Gambusia_affinis
ENSRROG00000043547	UPF2	90	84.038	ENSGACG00000001080	UPF2	100	81.967	Gasterosteus_aculeatus
ENSRROG00000043547	UPF2	100	92.767	ENSGAGG00000002700	UPF2	100	92.610	Gopherus_agassizii
ENSRROG00000043547	UPF2	100	99.528	ENSGGOG00000001479	UPF2	100	99.528	Gorilla_gorilla
ENSRROG00000043547	UPF2	100	80.592	ENSHBUG00000004249	UPF2	100	82.514	Haplochromis_burtoni
ENSRROG00000043547	UPF2	100	97.091	ENSHGLG00000015176	-	100	97.091	Heterocephalus_glaber_female
ENSRROG00000043547	UPF2	99	85.681	ENSHGLG00000003822	-	99	84.016	Heterocephalus_glaber_female
ENSRROG00000043547	UPF2	99	92.908	ENSHGLG00100010036	UPF2	100	90.669	Heterocephalus_glaber_male
ENSRROG00000043547	UPF2	100	80.512	ENSHCOG00000004025	UPF2	99	80.202	Hippocampus_comes
ENSRROG00000043547	UPF2	100	81.903	ENSIPUG00000015524	UPF2	100	81.889	Ictalurus_punctatus
ENSRROG00000043547	UPF2	100	97.640	ENSSTOG00000013075	UPF2	100	97.640	Ictidomys_tridecemlineatus
ENSRROG00000043547	UPF2	100	96.459	ENSJJAG00000004913	Upf2	100	96.459	Jaculus_jaculus
ENSRROG00000043547	UPF2	99	81.768	ENSKMAG00000001071	UPF2	100	82.118	Kryptolebias_marmoratus
ENSRROG00000043547	UPF2	80	82.237	ENSLBEG00000000728	-	93	82.336	Labrus_bergylta
ENSRROG00000043547	UPF2	100	82.686	ENSLBEG00000016394	-	99	82.582	Labrus_bergylta
ENSRROG00000043547	UPF2	99	77.821	ENSLACG00000015945	UPF2	100	79.389	Latimeria_chalumnae
ENSRROG00000043547	UPF2	99	83.858	ENSLOCG00000015698	UPF2	100	85.669	Lepisosteus_oculatus
ENSRROG00000043547	UPF2	100	99.764	ENSMFAG00000043865	UPF2	100	99.764	Macaca_fascicularis
ENSRROG00000043547	UPF2	100	99.764	ENSMMUG00000008241	UPF2	100	99.764	Macaca_mulatta
ENSRROG00000043547	UPF2	81	99.512	ENSMNEG00000008062	UPF2	100	99.512	Macaca_nemestrina
ENSRROG00000043547	UPF2	100	99.842	ENSMLEG00000036120	UPF2	100	99.874	Mandrillus_leucophaeus
ENSRROG00000043547	UPF2	100	82.051	ENSMAMG00000018276	UPF2	100	82.257	Mastacembelus_armatus
ENSRROG00000043547	UPF2	100	80.748	ENSMZEG00005021595	UPF2	100	82.541	Maylandia_zebra
ENSRROG00000043547	UPF2	99	91.824	ENSMGAG00000004573	UPF2	99	92.296	Meleagris_gallopavo
ENSRROG00000043547	UPF2	100	95.201	ENSMAUG00000016512	Upf2	100	95.201	Mesocricetus_auratus
ENSRROG00000043547	UPF2	100	93.423	ENSMICG00000001716	UPF2	100	94.090	Microcebus_murinus
ENSRROG00000043547	UPF2	100	96.932	ENSMOCG00000008263	Upf2	100	96.932	Microtus_ochrogaster
ENSRROG00000043547	UPF2	99	80.078	ENSMMOG00000006528	UPF2	100	80.188	Mola_mola
ENSRROG00000043547	UPF2	100	94.575	ENSMODG00000016794	UPF2	100	95.047	Monodelphis_domestica
ENSRROG00000043547	UPF2	99	81.875	ENSMALG00000002663	UPF2	100	81.925	Monopterus_albus
ENSRROG00000043547	UPF2	100	97.168	MGP_CAROLIEiJ_G0023157	Upf2	100	98.664	Mus_caroli
ENSRROG00000043547	UPF2	100	97.168	ENSMUSG00000043241	Upf2	100	97.168	Mus_musculus
ENSRROG00000043547	UPF2	100	96.774	MGP_PahariEiJ_G0019217	Upf2	100	97.710	Mus_pahari
ENSRROG00000043547	UPF2	100	97.404	MGP_SPRETEiJ_G0024075	Upf2	100	98.092	Mus_spretus
ENSRROG00000043547	UPF2	100	97.720	ENSMPUG00000001064	UPF2	100	97.720	Mustela_putorius_furo
ENSRROG00000043547	UPF2	99	97.017	ENSMLUG00000000228	UPF2	100	97.017	Myotis_lucifugus
ENSRROG00000043547	UPF2	100	80.748	ENSNBRG00000013629	UPF2	100	82.541	Neolamprologus_brichardi
ENSRROG00000043547	UPF2	100	99.450	ENSNLEG00000012058	UPF2	100	99.450	Nomascus_leucogenys
ENSRROG00000043547	UPF2	61	97.927	ENSMEUG00000002180	-	60	97.927	Notamacropus_eugenii
ENSRROG00000043547	UPF2	76	100.000	ENSOPRG00000006801	-	78	100.000	Ochotona_princeps
ENSRROG00000043547	UPF2	100	95.126	ENSODEG00000001290	UPF2	100	95.597	Octodon_degus
ENSRROG00000043547	UPF2	100	80.826	ENSONIG00000017991	UPF2	100	82.619	Oreochromis_niloticus
ENSRROG00000043547	UPF2	99	97.024	ENSOCUG00000006230	UPF2	100	97.024	Oryctolagus_cuniculus
ENSRROG00000043547	UPF2	100	81.182	ENSORLG00000017189	UPF2	100	81.917	Oryzias_latipes
ENSRROG00000043547	UPF2	100	81.182	ENSORLG00020005969	UPF2	100	81.917	Oryzias_latipes_hni
ENSRROG00000043547	UPF2	100	81.182	ENSORLG00015005713	UPF2	100	81.917	Oryzias_latipes_hsok
ENSRROG00000043547	UPF2	99	77.397	ENSOMEG00000023420	UPF2	98	78.828	Oryzias_melastigma
ENSRROG00000043547	UPF2	100	98.428	ENSOGAG00000005796	UPF2	100	98.428	Otolemur_garnettii
ENSRROG00000043547	UPF2	100	97.567	ENSOARG00000014587	UPF2	100	97.567	Ovis_aries
ENSRROG00000043547	UPF2	100	98.811	ENSPPAG00000037953	UPF2	100	98.811	Pan_paniscus
ENSRROG00000043547	UPF2	100	97.563	ENSPPRG00000000690	UPF2	100	97.563	Panthera_pardus
ENSRROG00000043547	UPF2	100	97.563	ENSPTIG00000008867	UPF2	100	97.563	Panthera_tigris_altaica
ENSRROG00000043547	UPF2	100	99.528	ENSPTRG00000002291	UPF2	100	99.528	Pan_troglodytes
ENSRROG00000043547	UPF2	100	99.764	ENSPANG00000023399	UPF2	100	99.764	Papio_anubis
ENSRROG00000043547	UPF2	100	80.031	ENSPKIG00000025502	UPF2	100	81.917	Paramormyrops_kingsleyae
ENSRROG00000043547	UPF2	60	91.379	ENSPSIG00000015158	UPF2	95	91.379	Pelodiscus_sinensis
ENSRROG00000043547	UPF2	99	79.592	ENSPMGG00000005259	UPF2	100	80.220	Periophthalmus_magnuspinnatus
ENSRROG00000043547	UPF2	93	93.895	ENSPEMG00000015731	Upf2	99	93.895	Peromyscus_maniculatus_bairdii
ENSRROG00000043547	UPF2	100	92.217	ENSPCIG00000006656	UPF2	100	94.733	Phascolarctos_cinereus
ENSRROG00000043547	UPF2	100	79.579	ENSPFOG00000017118	UPF2	100	81.684	Poecilia_formosa
ENSRROG00000043547	UPF2	100	79.579	ENSPLAG00000005094	UPF2	100	81.684	Poecilia_latipinna
ENSRROG00000043547	UPF2	100	79.579	ENSPMEG00000017009	UPF2	100	81.684	Poecilia_mexicana
ENSRROG00000043547	UPF2	99	79.343	ENSPREG00000021880	UPF2	100	81.847	Poecilia_reticulata
ENSRROG00000043547	UPF2	66	99.761	ENSPPYG00000002089	-	100	99.761	Pongo_abelii
ENSRROG00000043547	UPF2	90	87.879	ENSPCAG00000000684	UPF2	100	82.940	Procavia_capensis
ENSRROG00000043547	UPF2	100	96.355	ENSPCOG00000021656	UPF2	100	96.355	Propithecus_coquereli
ENSRROG00000043547	UPF2	100	89.945	ENSPVAG00000017286	UPF2	100	89.788	Pteropus_vampyrus
ENSRROG00000043547	UPF2	99	78.298	ENSPNYG00000017096	UPF2	100	80.094	Pundamilia_nyererei
ENSRROG00000043547	UPF2	100	83.073	ENSPNAG00000009357	UPF2	100	83.229	Pygocentrus_nattereri
ENSRROG00000043547	UPF2	99	91.209	ENSRNOG00000023593	Upf2	100	100.000	Rattus_norvegicus
ENSRROG00000043547	UPF2	100	98.891	ENSRBIG00000037780	UPF2	100	98.897	Rhinopithecus_bieti
ENSRROG00000043547	UPF2	100	98.977	ENSSBOG00000020012	UPF2	100	98.977	Saimiri_boliviensis_boliviensis
ENSRROG00000043547	UPF2	100	80.841	ENSSFOG00015023788	upf2	100	82.399	Scleropages_formosus
ENSRROG00000043547	UPF2	90	82.914	ENSSMAG00000007637	UPF2	100	79.922	Scophthalmus_maximus
ENSRROG00000043547	UPF2	100	82.229	ENSSDUG00000017244	UPF2	99	82.541	Seriola_dumerili
ENSRROG00000043547	UPF2	100	79.403	ENSSLDG00000016866	UPF2	100	79.764	Seriola_lalandi_dorsalis
ENSRROG00000043547	UPF2	100	95.283	ENSSARG00000008615	UPF2	100	94.969	Sorex_araneus
ENSRROG00000043547	UPF2	99	89.929	ENSSPUG00000014544	UPF2	99	89.536	Sphenodon_punctatus
ENSRROG00000043547	UPF2	68	98.964	ENSSSCG00000011117	-	100	98.964	Sus_scrofa
ENSRROG00000043547	UPF2	99	91.017	ENSTGUG00000002163	-	100	92.671	Taeniopygia_guttata
ENSRROG00000043547	UPF2	100	81.479	ENSTRUG00000007519	UPF2	99	81.917	Takifugu_rubripes
ENSRROG00000043547	UPF2	100	80.109	ENSTNIG00000004453	UPF2	100	80.000	Tetraodon_nigroviridis
ENSRROG00000043547	UPF2	93	90.940	ENSTBEG00000012679	UPF2	93	90.940	Tupaia_belangeri
ENSRROG00000043547	UPF2	100	97.642	ENSTTRG00000016388	UPF2	100	97.642	Tursiops_truncatus
ENSRROG00000043547	UPF2	95	100.000	ENSUAMG00000023560	UPF2	99	100.000	Ursus_americanus
ENSRROG00000043547	UPF2	100	97.956	ENSUMAG00000012953	UPF2	95	97.956	Ursus_maritimus
ENSRROG00000043547	UPF2	85	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSRROG00000043547	UPF2	100	97.642	ENSVVUG00000006166	UPF2	100	97.642	Vulpes_vulpes
ENSRROG00000043547	UPF2	100	83.359	ENSXETG00000033103	UPF2	91	89.187	Xenopus_tropicalis
ENSRROG00000043547	UPF2	92	84.116	ENSXCOG00000011604	UPF2	100	81.343	Xiphophorus_couchianus
ENSRROG00000043547	UPF2	92	84.399	ENSXMAG00000017209	UPF2	100	81.372	Xiphophorus_maculatus