EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSARG00000000310 (Gene tree)
Gene ID: -
Gene Symbol: PABPC4
Alias: APP-1|iPABP
Full Name: poly(A) binding protein cytoplasmic 4
Gene Type: protein_coding
Species: Sorex_araneus
Status: putative
Strand: Minus strand
Length: 16575 bases
Position: chrGeneScaffold_919:1933-18507
Accession: 8557
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSARP00000000279	PABP	PF00658.18	1.1e-27	1	1
ENSSARP00000000279	RRM_5	PF13893.6	2.7e-09	1	2
ENSSARP00000000279	RRM_5	PF13893.6	2.7e-09	2	2
ENSSARP00000000279	RRM_1	PF00076.22	1.7e-70	1	3
ENSSARP00000000279	RRM_1	PF00076.22	1.7e-70	2	3
ENSSARP00000000279	RRM_1	PF00076.22	1.7e-70	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSART00000000310	PABPC4-201	1899	-	ENSSARP00000000279	632 (aa)	-	UPI00015804D6

Gene Model

Click here to download ENSSARG00000000310's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSARG00000000310's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSARG00000000310	PABPC4	89	65.338	ENSSARG00000004448	PABPC1	100	65.096
ENSSARG00000000310	PABPC4	50	66.234	ENSSARG00000014012	PABPC5	96	59.341

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSARG00000000310	PABPC4	100	91.970	ENSG00000090621	PABPC4	99	100.000	Homo_sapiens
ENSSARG00000000310	PABPC4	99	73.030	ENSAPOG00000001161	pabpc4	100	73.543	Acanthochromis_polyacanthus
ENSSARG00000000310	PABPC4	93	54.746	ENSAMEG00000015083	-	89	54.068	Ailuropoda_melanoleuca
ENSSARG00000000310	PABPC4	100	91.970	ENSAMEG00000011535	-	100	91.970	Ailuropoda_melanoleuca
ENSSARG00000000310	PABPC4	100	73.842	ENSACIG00000023343	pabpc4	100	74.439	Amphilophus_citrinellus
ENSSARG00000000310	PABPC4	99	73.485	ENSAOCG00000021529	pabpc4	100	81.614	Amphiprion_ocellaris
ENSSARG00000000310	PABPC4	99	73.485	ENSAPEG00000019196	pabpc4	100	73.842	Amphiprion_percula
ENSSARG00000000310	PABPC4	99	72.205	ENSATEG00000007402	pabpc4	100	72.985	Anabas_testudineus
ENSSARG00000000310	PABPC4	98	81.972	ENSAPLG00000009729	-	100	81.972	Anas_platyrhynchos
ENSSARG00000000310	PABPC4	93	84.864	ENSACAG00000002544	PABPC4	100	84.864	Anolis_carolinensis
ENSSARG00000000310	PABPC4	100	91.818	ENSANAG00000025079	PABPC4	95	97.189	Aotus_nancymaae
ENSSARG00000000310	PABPC4	100	73.244	ENSACLG00000019558	pabpc4	100	73.842	Astatotilapia_calliptera
ENSSARG00000000310	PABPC4	99	68.997	ENSAMXG00000018779	pabpc4	99	69.605	Astyanax_mexicanus
ENSSARG00000000310	PABPC4	100	88.351	ENSBTAG00000017125	PABPC4	100	88.502	Bos_taurus
ENSSARG00000000310	PABPC4	51	70.968	ENSBTAG00000048536	-	88	70.968	Bos_taurus
ENSSARG00000000310	PABPC4	100	91.818	ENSCJAG00000002512	-	100	91.818	Callithrix_jacchus
ENSSARG00000000310	PABPC4	68	83.516	ENSCJAG00000045953	-	92	83.456	Callithrix_jacchus
ENSSARG00000000310	PABPC4	94	97.983	ENSCAFG00000003081	PABPC4	100	87.576	Canis_familiaris
ENSSARG00000000310	PABPC4	100	91.818	ENSCAFG00020004161	PABPC4	100	91.818	Canis_lupus_dingo
ENSSARG00000000310	PABPC4	100	91.667	ENSCHIG00000019398	-	100	91.667	Capra_hircus
ENSSARG00000000310	PABPC4	100	71.298	ENSCHIG00000023385	-	100	71.298	Capra_hircus
ENSSARG00000000310	PABPC4	100	91.970	ENSTSYG00000006532	PABPC4	100	91.970	Carlito_syrichta
ENSSARG00000000310	PABPC4	99	91.933	ENSCAPG00000015984	PABPC4	99	91.933	Cavia_aperea
ENSSARG00000000310	PABPC4	100	91.667	ENSCPOG00000009552	PABPC4	100	91.667	Cavia_porcellus
ENSSARG00000000310	PABPC4	100	91.818	ENSCCAG00000037306	PABPC4	100	91.818	Cebus_capucinus
ENSSARG00000000310	PABPC4	100	92.121	ENSCATG00000042164	PABPC4	95	97.189	Cercocebus_atys
ENSSARG00000000310	PABPC4	100	91.515	ENSCLAG00000011899	PABPC4	100	91.515	Chinchilla_lanigera
ENSSARG00000000310	PABPC4	100	92.121	ENSCSAG00000001135	PABPC4	100	92.121	Chlorocebus_sabaeus
ENSSARG00000000310	PABPC4	76	96.570	ENSCHOG00000005327	PABPC4	81	96.570	Choloepus_hoffmanni
ENSSARG00000000310	PABPC4	99	81.032	ENSCPBG00000001038	PABPC4	100	81.032	Chrysemys_picta_bellii
ENSSARG00000000310	PABPC4	98	92.769	ENSCANG00000034177	PABPC4	100	92.769	Colobus_angolensis_palliatus
ENSSARG00000000310	PABPC4	99	90.323	ENSCGRG00001018166	Pabpc4	100	89.307	Cricetulus_griseus_chok1gshd
ENSSARG00000000310	PABPC4	97	88.768	ENSCGRG00000009777	Pabpc4	100	87.768	Cricetulus_griseus_crigri
ENSSARG00000000310	PABPC4	100	72.646	ENSCSEG00000000130	pabpc4	100	73.094	Cynoglossus_semilaevis
ENSSARG00000000310	PABPC4	98	73.820	ENSCVAG00000019246	pabpc4	100	74.734	Cyprinodon_variegatus
ENSSARG00000000310	PABPC4	99	74.810	ENSDARG00000059259	pabpc4	100	74.439	Danio_rerio
ENSSARG00000000310	PABPC4	92	98.448	ENSDNOG00000018444	-	99	98.448	Dasypus_novemcinctus
ENSSARG00000000310	PABPC4	100	89.697	ENSDORG00000011581	Pabpc4	100	89.697	Dipodomys_ordii
ENSSARG00000000310	PABPC4	90	61.444	ENSETEG00000009172	-	99	61.498	Echinops_telfairi
ENSSARG00000000310	PABPC4	90	95.943	ENSETEG00000018453	-	75	95.943	Echinops_telfairi
ENSSARG00000000310	PABPC4	97	66.821	ENSEBUG00000013782	pabpc4	99	67.020	Eptatretus_burgeri
ENSSARG00000000310	PABPC4	99	66.868	ENSEBUG00000000992	pabpc4	99	75.806	Eptatretus_burgeri
ENSSARG00000000310	PABPC4	94	98.487	ENSEASG00005014119	PABPC4	100	92.273	Equus_asinus_asinus
ENSSARG00000000310	PABPC4	94	98.487	ENSECAG00000009396	PABPC4	100	92.273	Equus_caballus
ENSSARG00000000310	PABPC4	100	88.788	ENSEEUG00000002962	PABPC4	100	88.788	Erinaceus_europaeus
ENSSARG00000000310	PABPC4	99	73.939	ENSELUG00000003195	pabpc4	99	74.699	Esox_lucius
ENSSARG00000000310	PABPC4	100	91.970	ENSFCAG00000015254	-	100	91.970	Felis_catus
ENSSARG00000000310	PABPC4	99	80.273	ENSFALG00000000543	PABPC4	100	80.273	Ficedula_albicollis
ENSSARG00000000310	PABPC4	100	91.818	ENSFDAG00000020016	-	100	91.818	Fukomys_damarensis
ENSSARG00000000310	PABPC4	94	66.872	ENSFDAG00000010581	-	100	63.193	Fukomys_damarensis
ENSSARG00000000310	PABPC4	100	73.503	ENSFHEG00000007548	pabpc4	93	87.619	Fundulus_heteroclitus
ENSSARG00000000310	PABPC4	99	72.851	ENSGMOG00000019025	pabpc4	99	73.454	Gadus_morhua
ENSSARG00000000310	PABPC4	99	81.032	ENSGALG00000003800	PABPC4	100	81.032	Gallus_gallus
ENSSARG00000000310	PABPC4	100	73.574	ENSGAFG00000018195	pabpc4	99	83.493	Gambusia_affinis
ENSSARG00000000310	PABPC4	100	71.749	ENSGACG00000007179	pabpc4	100	72.496	Gasterosteus_aculeatus
ENSSARG00000000310	PABPC4	99	80.880	ENSGAGG00000001888	PABPC4	100	80.880	Gopherus_agassizii
ENSSARG00000000310	PABPC4	100	91.970	ENSGGOG00000004002	PABPC4	100	91.970	Gorilla_gorilla
ENSSARG00000000310	PABPC4	100	73.393	ENSHBUG00000020206	pabpc4	100	73.991	Haplochromis_burtoni
ENSSARG00000000310	PABPC4	100	91.970	ENSHGLG00000011162	PABPC4	100	91.970	Heterocephalus_glaber_female
ENSSARG00000000310	PABPC4	100	89.697	ENSHGLG00100001580	PABPC4	100	89.697	Heterocephalus_glaber_male
ENSSARG00000000310	PABPC4	100	72.904	ENSHCOG00000012694	pabpc4	100	73.054	Hippocampus_comes
ENSSARG00000000310	PABPC4	98	72.853	ENSIPUG00000016620	pabpc4	99	73.574	Ictalurus_punctatus
ENSSARG00000000310	PABPC4	100	89.545	ENSSTOG00000010416	PABPC4	100	89.545	Ictidomys_tridecemlineatus
ENSSARG00000000310	PABPC4	100	86.970	ENSJJAG00000007781	Pabpc4	100	86.970	Jaculus_jaculus
ENSSARG00000000310	PABPC4	99	73.233	ENSKMAG00000013597	pabpc4	99	73.343	Kryptolebias_marmoratus
ENSSARG00000000310	PABPC4	99	72.388	ENSLBEG00000013654	pabpc4	99	72.795	Labrus_bergylta
ENSSARG00000000310	PABPC4	99	77.677	ENSLACG00000011907	PABPC4	100	77.677	Latimeria_chalumnae
ENSSARG00000000310	PABPC4	100	75.676	ENSLOCG00000001877	pabpc4	99	75.526	Lepisosteus_oculatus
ENSSARG00000000310	PABPC4	100	91.970	ENSLAFG00000000151	PABPC4	100	91.970	Loxodonta_africana
ENSSARG00000000310	PABPC4	100	92.121	ENSMFAG00000041481	PABPC4	100	92.121	Macaca_fascicularis
ENSSARG00000000310	PABPC4	100	92.121	ENSMMUG00000007497	PABPC4	100	92.121	Macaca_mulatta
ENSSARG00000000310	PABPC4	100	91.970	ENSMNEG00000043054	PABPC4	100	91.970	Macaca_nemestrina
ENSSARG00000000310	PABPC4	100	92.121	ENSMLEG00000040716	PABPC4	95	97.189	Mandrillus_leucophaeus
ENSSARG00000000310	PABPC4	99	73.182	ENSMAMG00000010025	pabpc4	99	73.083	Mastacembelus_armatus
ENSSARG00000000310	PABPC4	100	81.693	ENSMZEG00005006141	pabpc4	92	86.792	Maylandia_zebra
ENSSARG00000000310	PABPC4	94	86.387	ENSMGAG00000005408	PABPC4	99	86.387	Meleagris_gallopavo
ENSSARG00000000310	PABPC4	52	66.879	ENSMAUG00000004089	-	89	66.879	Mesocricetus_auratus
ENSSARG00000000310	PABPC4	59	89.904	ENSMAUG00000001295	-	97	89.904	Mesocricetus_auratus
ENSSARG00000000310	PABPC4	72	98.958	ENSMAUG00000019763	-	83	94.495	Mesocricetus_auratus
ENSSARG00000000310	PABPC4	89	86.125	ENSMICG00000016633	-	97	98.723	Microcebus_murinus
ENSSARG00000000310	PABPC4	94	72.788	ENSMICG00000036729	-	100	75.169	Microcebus_murinus
ENSSARG00000000310	PABPC4	99	90.965	ENSMOCG00000006763	Pabpc4	100	90.361	Microtus_ochrogaster
ENSSARG00000000310	PABPC4	100	68.000	ENSMMOG00000002363	pabpc4	99	71.041	Mola_mola
ENSSARG00000000310	PABPC4	98	82.253	ENSMODG00000017657	-	100	81.970	Monodelphis_domestica
ENSSARG00000000310	PABPC4	50	72.871	ENSMODG00000018051	-	89	72.871	Monodelphis_domestica
ENSSARG00000000310	PABPC4	99	72.549	ENSMALG00000011017	pabpc4	100	73.214	Monopterus_albus
ENSSARG00000000310	PABPC4	93	82.881	MGP_CAROLIEiJ_G0024864	-	100	82.881	Mus_caroli
ENSSARG00000000310	PABPC4	100	90.758	MGP_CAROLIEiJ_G0026435	-	100	90.758	Mus_caroli
ENSSARG00000000310	PABPC4	100	90.758	ENSMUSG00000011257	Pabpc4	100	90.758	Mus_musculus
ENSSARG00000000310	PABPC4	98	91.231	MGP_PahariEiJ_G0028765	Pabpc4	100	91.231	Mus_pahari
ENSSARG00000000310	PABPC4	98	79.567	MGP_SPRETEiJ_G0027415	Pabpc4	100	80.292	Mus_spretus
ENSSARG00000000310	PABPC4	100	91.970	ENSMPUG00000014414	-	100	91.970	Mustela_putorius_furo
ENSSARG00000000310	PABPC4	91	51.304	ENSMPUG00000006836	-	91	51.304	Mustela_putorius_furo
ENSSARG00000000310	PABPC4	100	84.848	ENSMLUG00000012068	PABPC4	100	84.848	Myotis_lucifugus
ENSSARG00000000310	PABPC4	100	89.242	ENSNGAG00000018292	Pabpc4	100	89.242	Nannospalax_galili
ENSSARG00000000310	PABPC4	51	89.881	ENSNBRG00000010047	-	75	86.441	Neolamprologus_brichardi
ENSSARG00000000310	PABPC4	55	73.913	ENSNBRG00000009708	pabpc4	98	73.913	Neolamprologus_brichardi
ENSSARG00000000310	PABPC4	100	89.848	ENSNLEG00000011928	PABPC4	100	89.848	Nomascus_leucogenys
ENSSARG00000000310	PABPC4	81	93.651	ENSOPRG00000011984	PABPC4	87	93.651	Ochotona_princeps
ENSSARG00000000310	PABPC4	100	91.061	ENSODEG00000006592	-	100	91.061	Octodon_degus
ENSSARG00000000310	PABPC4	94	88.706	ENSODEG00000017434	-	100	88.391	Octodon_degus
ENSSARG00000000310	PABPC4	100	73.543	ENSONIG00000008176	pabpc4	100	73.692	Oreochromis_niloticus
ENSSARG00000000310	PABPC4	99	80.577	ENSOANG00000010001	PABPC4	100	80.577	Ornithorhynchus_anatinus
ENSSARG00000000310	PABPC4	96	91.297	ENSOCUG00000000562	PABPC4	88	91.297	Oryctolagus_cuniculus
ENSSARG00000000310	PABPC4	99	78.395	ENSORLG00000017479	pabpc4	99	78.395	Oryzias_latipes
ENSSARG00000000310	PABPC4	99	78.395	ENSORLG00020018644	pabpc4	99	78.395	Oryzias_latipes_hni
ENSSARG00000000310	PABPC4	99	78.395	ENSORLG00015015042	pabpc4	99	78.395	Oryzias_latipes_hsok
ENSSARG00000000310	PABPC4	99	72.879	ENSOMEG00000014410	pabpc4	99	78.814	Oryzias_melastigma
ENSSARG00000000310	PABPC4	100	88.537	ENSOGAG00000004067	PABPC4	100	88.688	Otolemur_garnettii
ENSSARG00000000310	PABPC4	100	91.667	ENSOARG00000020060	PABPC4	100	91.667	Ovis_aries
ENSSARG00000000310	PABPC4	100	91.970	ENSPPAG00000043625	PABPC4	100	91.970	Pan_paniscus
ENSSARG00000000310	PABPC4	100	91.970	ENSPPRG00000024727	PABPC4	100	91.970	Panthera_pardus
ENSSARG00000000310	PABPC4	100	91.970	ENSPTIG00000005829	PABPC4	100	91.970	Panthera_tigris_altaica
ENSSARG00000000310	PABPC4	100	91.970	ENSPTRG00000000573	PABPC4	100	91.970	Pan_troglodytes
ENSSARG00000000310	PABPC4	100	91.970	ENSPANG00000009484	PABPC4	97	95.276	Papio_anubis
ENSSARG00000000310	PABPC4	99	74.169	ENSPKIG00000025356	pabpc4	99	74.773	Paramormyrops_kingsleyae
ENSSARG00000000310	PABPC4	99	81.032	ENSPSIG00000016892	PABPC4	100	81.032	Pelodiscus_sinensis
ENSSARG00000000310	PABPC4	100	66.018	ENSPMGG00000009073	pabpc4	99	70.695	Periophthalmus_magnuspinnatus
ENSSARG00000000310	PABPC4	99	84.043	ENSPEMG00000024193	-	99	84.043	Peromyscus_maniculatus_bairdii
ENSSARG00000000310	PABPC4	100	89.848	ENSPEMG00000023569	-	99	89.848	Peromyscus_maniculatus_bairdii
ENSSARG00000000310	PABPC4	91	66.925	ENSPMAG00000007885	pabpc4	100	66.292	Petromyzon_marinus
ENSSARG00000000310	PABPC4	89	63.036	ENSPMAG00000002836	pabpc4	100	63.366	Petromyzon_marinus
ENSSARG00000000310	PABPC4	98	81.607	ENSPCIG00000020674	PABPC4	99	86.607	Phascolarctos_cinereus
ENSSARG00000000310	PABPC4	100	72.754	ENSPFOG00000002682	pabpc4	100	73.653	Poecilia_formosa
ENSSARG00000000310	PABPC4	100	72.754	ENSPLAG00000010112	pabpc4	100	74.102	Poecilia_latipinna
ENSSARG00000000310	PABPC4	99	73.100	ENSPMEG00000019739	pabpc4	100	73.802	Poecilia_mexicana
ENSSARG00000000310	PABPC4	100	74.150	ENSPREG00000001589	pabpc4	96	78.441	Poecilia_reticulata
ENSSARG00000000310	PABPC4	100	91.970	ENSPPYG00000001506	PABPC4	100	91.970	Pongo_abelii
ENSSARG00000000310	PABPC4	100	87.121	ENSPCAG00000003341	PABPC4	100	87.121	Procavia_capensis
ENSSARG00000000310	PABPC4	93	81.154	ENSPCOG00000025882	-	95	93.069	Propithecus_coquereli
ENSSARG00000000310	PABPC4	100	91.225	ENSPCOG00000023725	-	100	91.377	Propithecus_coquereli
ENSSARG00000000310	PABPC4	94	97.647	ENSPVAG00000002187	PABPC4	100	97.647	Pteropus_vampyrus
ENSSARG00000000310	PABPC4	100	73.244	ENSPNYG00000006134	pabpc4	100	73.842	Pundamilia_nyererei
ENSSARG00000000310	PABPC4	100	73.204	ENSPNAG00000024355	pabpc4	100	73.353	Pygocentrus_nattereri
ENSSARG00000000310	PABPC4	100	86.515	ENSRNOG00000028592	AABR07035074.1	100	86.515	Rattus_norvegicus
ENSSARG00000000310	PABPC4	100	88.182	ENSRNOG00000015642	Pabpc4	100	88.182	Rattus_norvegicus
ENSSARG00000000310	PABPC4	100	92.121	ENSRBIG00000039761	PABPC4	100	92.121	Rhinopithecus_bieti
ENSSARG00000000310	PABPC4	100	92.121	ENSRROG00000033355	PABPC4	100	92.121	Rhinopithecus_roxellana
ENSSARG00000000310	PABPC4	100	91.667	ENSSBOG00000026193	PABPC4	100	91.667	Saimiri_boliviensis_boliviensis
ENSSARG00000000310	PABPC4	98	81.453	ENSSHAG00000018139	PABPC4	100	81.184	Sarcophilus_harrisii
ENSSARG00000000310	PABPC4	96	77.057	ENSSFOG00015023514	pabpc4	99	76.972	Scleropages_formosus
ENSSARG00000000310	PABPC4	99	72.769	ENSSMAG00000009007	pabpc4	99	72.920	Scophthalmus_maximus
ENSSARG00000000310	PABPC4	99	72.879	ENSSDUG00000012683	pabpc4	95	83.478	Seriola_dumerili
ENSSARG00000000310	PABPC4	99	72.879	ENSSLDG00000013025	pabpc4	97	83.478	Seriola_lalandi_dorsalis
ENSSARG00000000310	PABPC4	99	80.577	ENSSPUG00000003204	PABPC4	100	80.425	Sphenodon_punctatus
ENSSARG00000000310	PABPC4	99	81.348	ENSSPAG00000009252	pabpc4	100	73.037	Stegastes_partitus
ENSSARG00000000310	PABPC4	100	91.818	ENSSSCG00000003660	-	100	91.818	Sus_scrofa
ENSSARG00000000310	PABPC4	93	50.168	ENSSSCG00000036170	-	96	50.168	Sus_scrofa
ENSSARG00000000310	PABPC4	99	80.938	ENSTGUG00000001266	PABPC4	100	80.938	Taeniopygia_guttata
ENSSARG00000000310	PABPC4	100	72.305	ENSTRUG00000005907	pabpc4	99	72.823	Takifugu_rubripes
ENSSARG00000000310	PABPC4	100	69.080	ENSTNIG00000016902	pabpc4	99	69.080	Tetraodon_nigroviridis
ENSSARG00000000310	PABPC4	94	87.227	ENSTBEG00000009035	PABPC4	100	87.227	Tupaia_belangeri
ENSSARG00000000310	PABPC4	94	82.759	ENSTTRG00000014340	PABPC4	100	86.555	Tursiops_truncatus
ENSSARG00000000310	PABPC4	100	91.667	ENSUAMG00000000303	PABPC4	100	91.667	Ursus_americanus
ENSSARG00000000310	PABPC4	100	91.667	ENSUMAG00000019585	PABPC4	100	97.793	Ursus_maritimus
ENSSARG00000000310	PABPC4	79	97.163	ENSVPAG00000010041	PABPC4	59	97.163	Vicugna_pacos
ENSSARG00000000310	PABPC4	100	91.818	ENSVVUG00000005215	PABPC4	100	91.818	Vulpes_vulpes
ENSSARG00000000310	PABPC4	57	73.810	ENSXETG00000027221	-	100	73.810	Xenopus_tropicalis
ENSSARG00000000310	PABPC4	99	72.838	ENSXETG00000010946	pabpc4	100	72.838	Xenopus_tropicalis
ENSSARG00000000310	PABPC4	95	77.076	ENSXCOG00000013190	pabpc4	96	88.208	Xiphophorus_couchianus
ENSSARG00000000310	PABPC4	100	73.054	ENSXMAG00000019007	pabpc4	100	73.952	Xiphophorus_maculatus