EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSARG00000000689 (Gene tree)
Gene ID: -
Gene Symbol: LSM6
Alias: YDR378C
Full Name: LSM6 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Sorex_araneus
Status: putative
Strand: Minus strand
Length: 1248 bases
Position: chrscaffold_136722:8486-9733
Accession: 17017
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSARP00000000633	LSM	PF01423.22	1.5e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSART00000000693	LSM6-201	147	-	ENSSARP00000000633	48 (aa)	-	UPI0000E400F1

Gene Model

Click here to download ENSSARG00000000689's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSARG00000000689's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSARG00000000689	LSM6	100	100.000	ENSG00000164167	LSM6	60	100.000	Homo_sapiens
ENSSARG00000000689	LSM6	100	91.667	ENSAPOG00000019832	lsm6	60	91.667	Acanthochromis_polyacanthus
ENSSARG00000000689	LSM6	100	100.000	ENSAMEG00000016671	LSM6	60	100.000	Ailuropoda_melanoleuca
ENSSARG00000000689	LSM6	100	91.667	ENSACIG00000016711	lsm6	60	91.667	Amphilophus_citrinellus
ENSSARG00000000689	LSM6	100	91.667	ENSAPEG00000023992	lsm6	60	91.667	Amphiprion_percula
ENSSARG00000000689	LSM6	100	91.667	ENSATEG00000012610	lsm6	60	91.667	Anabas_testudineus
ENSSARG00000000689	LSM6	100	100.000	ENSAPLG00000012594	LSM6	62	100.000	Anas_platyrhynchos
ENSSARG00000000689	LSM6	100	100.000	ENSACAG00000004004	LSM6	60	100.000	Anolis_carolinensis
ENSSARG00000000689	LSM6	100	81.250	ENSANAG00000021839	-	57	81.250	Aotus_nancymaae
ENSSARG00000000689	LSM6	100	100.000	ENSANAG00000030568	-	60	100.000	Aotus_nancymaae
ENSSARG00000000689	LSM6	100	91.667	ENSACLG00000025621	lsm6	60	91.667	Astatotilapia_calliptera
ENSSARG00000000689	LSM6	100	93.750	ENSAMXG00000038738	lsm6	60	93.750	Astyanax_mexicanus
ENSSARG00000000689	LSM6	100	93.750	ENSBTAG00000052085	-	60	93.750	Bos_taurus
ENSSARG00000000689	LSM6	100	100.000	ENSBTAG00000014060	LSM6	60	100.000	Bos_taurus
ENSSARG00000000689	LSM6	96	86.957	WBGene00003080	lsm-6	60	86.957	Caenorhabditis_elegans
ENSSARG00000000689	LSM6	100	100.000	ENSCJAG00000002482	LSM6	60	100.000	Callithrix_jacchus
ENSSARG00000000689	LSM6	100	100.000	ENSCAFG00000007738	LSM6	60	100.000	Canis_familiaris
ENSSARG00000000689	LSM6	100	100.000	ENSCAFG00020025902	LSM6	60	100.000	Canis_lupus_dingo
ENSSARG00000000689	LSM6	100	100.000	ENSCHIG00000010334	-	60	100.000	Capra_hircus
ENSSARG00000000689	LSM6	81	100.000	ENSCHIG00000012864	-	55	100.000	Capra_hircus
ENSSARG00000000689	LSM6	100	100.000	ENSTSYG00000026972	LSM6	60	100.000	Carlito_syrichta
ENSSARG00000000689	LSM6	100	79.167	ENSTSYG00000012759	-	54	79.167	Carlito_syrichta
ENSSARG00000000689	LSM6	100	100.000	ENSCAPG00000008104	LSM6	60	100.000	Cavia_aperea
ENSSARG00000000689	LSM6	69	93.939	ENSCAPG00000011179	-	51	93.939	Cavia_aperea
ENSSARG00000000689	LSM6	100	100.000	ENSCPOG00000032655	LSM6	60	100.000	Cavia_porcellus
ENSSARG00000000689	LSM6	100	100.000	ENSCCAG00000036437	LSM6	60	100.000	Cebus_capucinus
ENSSARG00000000689	LSM6	98	100.000	ENSCCAG00000020665	-	59	100.000	Cebus_capucinus
ENSSARG00000000689	LSM6	100	62.500	ENSCATG00000038799	-	55	62.500	Cercocebus_atys
ENSSARG00000000689	LSM6	100	100.000	ENSCATG00000002770	-	60	100.000	Cercocebus_atys
ENSSARG00000000689	LSM6	100	100.000	ENSCLAG00000005495	LSM6	60	100.000	Chinchilla_lanigera
ENSSARG00000000689	LSM6	81	79.487	ENSCLAG00000005685	-	54	79.487	Chinchilla_lanigera
ENSSARG00000000689	LSM6	100	100.000	ENSCSAG00000003421	LSM6	60	100.000	Chlorocebus_sabaeus
ENSSARG00000000689	LSM6	100	100.000	ENSCPBG00000027472	LSM6	51	100.000	Chrysemys_picta_bellii
ENSSARG00000000689	LSM6	98	95.745	ENSCING00000019152	-	57	95.745	Ciona_intestinalis
ENSSARG00000000689	LSM6	98	95.745	ENSCSAVG00000002065	-	57	95.745	Ciona_savignyi
ENSSARG00000000689	LSM6	100	100.000	ENSCANG00000006849	-	60	100.000	Colobus_angolensis_palliatus
ENSSARG00000000689	LSM6	100	100.000	ENSCANG00000041263	-	60	100.000	Colobus_angolensis_palliatus
ENSSARG00000000689	LSM6	100	58.333	ENSCANG00000035214	-	55	58.333	Colobus_angolensis_palliatus
ENSSARG00000000689	LSM6	100	100.000	ENSCGRG00001017142	Lsm6	60	100.000	Cricetulus_griseus_chok1gshd
ENSSARG00000000689	LSM6	100	100.000	ENSCGRG00000008320	Lsm6	60	100.000	Cricetulus_griseus_crigri
ENSSARG00000000689	LSM6	100	91.667	ENSCSEG00000000423	lsm6	60	91.667	Cynoglossus_semilaevis
ENSSARG00000000689	LSM6	100	91.667	ENSCVAG00000001592	lsm6	60	91.667	Cyprinodon_variegatus
ENSSARG00000000689	LSM6	100	93.750	ENSDARG00000036995	lsm6	60	93.750	Danio_rerio
ENSSARG00000000689	LSM6	100	97.917	ENSDNOG00000044848	-	60	97.917	Dasypus_novemcinctus
ENSSARG00000000689	LSM6	100	100.000	ENSDORG00000000933	Lsm6	60	100.000	Dipodomys_ordii
ENSSARG00000000689	LSM6	100	95.833	FBgn0034564	CG9344	61	95.833	Drosophila_melanogaster
ENSSARG00000000689	LSM6	100	100.000	ENSETEG00000013098	LSM6	100	100.000	Echinops_telfairi
ENSSARG00000000689	LSM6	100	97.917	ENSEBUG00000017073	lsm6	60	97.917	Eptatretus_burgeri
ENSSARG00000000689	LSM6	100	100.000	ENSECAG00000021036	LSM6	60	100.000	Equus_caballus
ENSSARG00000000689	LSM6	100	100.000	ENSEEUG00000002101	LSM6	62	100.000	Erinaceus_europaeus
ENSSARG00000000689	LSM6	100	93.750	ENSELUG00000014301	LSM6	60	93.750	Esox_lucius
ENSSARG00000000689	LSM6	100	100.000	ENSFCAG00000003047	LSM6	60	100.000	Felis_catus
ENSSARG00000000689	LSM6	100	100.000	ENSFALG00000005509	LSM6	55	100.000	Ficedula_albicollis
ENSSARG00000000689	LSM6	100	100.000	ENSFDAG00000020913	-	60	100.000	Fukomys_damarensis
ENSSARG00000000689	LSM6	100	87.500	ENSFDAG00000019073	-	60	87.500	Fukomys_damarensis
ENSSARG00000000689	LSM6	100	91.667	ENSFHEG00000007948	lsm6	60	91.667	Fundulus_heteroclitus
ENSSARG00000000689	LSM6	100	91.667	ENSGMOG00000015550	lsm6	60	91.667	Gadus_morhua
ENSSARG00000000689	LSM6	100	100.000	ENSGALG00000009985	LSM6	60	100.000	Gallus_gallus
ENSSARG00000000689	LSM6	100	91.667	ENSGAFG00000017763	lsm6	60	91.667	Gambusia_affinis
ENSSARG00000000689	LSM6	98	93.617	ENSGACG00000017223	lsm6	59	93.617	Gasterosteus_aculeatus
ENSSARG00000000689	LSM6	100	100.000	ENSGAGG00000020980	LSM6	60	100.000	Gopherus_agassizii
ENSSARG00000000689	LSM6	100	100.000	ENSGGOG00000001310	LSM6	60	100.000	Gorilla_gorilla
ENSSARG00000000689	LSM6	100	91.667	ENSHBUG00000008618	lsm6	60	91.667	Haplochromis_burtoni
ENSSARG00000000689	LSM6	100	100.000	ENSHGLG00000000205	LSM6	60	100.000	Heterocephalus_glaber_female
ENSSARG00000000689	LSM6	100	100.000	ENSHGLG00100014341	LSM6	60	100.000	Heterocephalus_glaber_male
ENSSARG00000000689	LSM6	100	91.667	ENSHCOG00000005591	lsm6	60	91.667	Hippocampus_comes
ENSSARG00000000689	LSM6	100	93.750	ENSIPUG00000004508	lsm6	60	93.750	Ictalurus_punctatus
ENSSARG00000000689	LSM6	100	100.000	ENSSTOG00000002678	LSM6	60	100.000	Ictidomys_tridecemlineatus
ENSSARG00000000689	LSM6	100	100.000	ENSJJAG00000013845	-	60	100.000	Jaculus_jaculus
ENSSARG00000000689	LSM6	100	91.667	ENSJJAG00000011211	-	60	91.667	Jaculus_jaculus
ENSSARG00000000689	LSM6	100	91.667	ENSJJAG00000016942	-	66	91.667	Jaculus_jaculus
ENSSARG00000000689	LSM6	100	91.667	ENSKMAG00000004105	lsm6	60	91.667	Kryptolebias_marmoratus
ENSSARG00000000689	LSM6	100	91.667	ENSLBEG00000018441	lsm6	60	91.667	Labrus_bergylta
ENSSARG00000000689	LSM6	100	100.000	ENSLACG00000006937	LSM6	60	100.000	Latimeria_chalumnae
ENSSARG00000000689	LSM6	100	93.750	ENSLOCG00000008852	lsm6	60	93.750	Lepisosteus_oculatus
ENSSARG00000000689	LSM6	100	93.750	ENSLOCG00000017683	-	60	93.750	Lepisosteus_oculatus
ENSSARG00000000689	LSM6	100	100.000	ENSLAFG00000001952	LSM6	60	100.000	Loxodonta_africana
ENSSARG00000000689	LSM6	100	100.000	ENSMFAG00000033073	LSM6	60	100.000	Macaca_fascicularis
ENSSARG00000000689	LSM6	100	62.500	ENSMNEG00000040412	-	55	62.500	Macaca_nemestrina
ENSSARG00000000689	LSM6	100	100.000	ENSMNEG00000034820	-	60	100.000	Macaca_nemestrina
ENSSARG00000000689	LSM6	100	100.000	ENSMLEG00000035153	LSM6	60	100.000	Mandrillus_leucophaeus
ENSSARG00000000689	LSM6	100	91.667	ENSMAMG00000014029	lsm6	60	91.667	Mastacembelus_armatus
ENSSARG00000000689	LSM6	100	91.667	ENSMZEG00005009146	lsm6	60	91.667	Maylandia_zebra
ENSSARG00000000689	LSM6	100	100.000	ENSMGAG00000003802	LSM6	60	100.000	Meleagris_gallopavo
ENSSARG00000000689	LSM6	100	100.000	ENSMAUG00000014938	Lsm6	60	100.000	Mesocricetus_auratus
ENSSARG00000000689	LSM6	100	100.000	ENSMICG00000042599	LSM6	60	100.000	Microcebus_murinus
ENSSARG00000000689	LSM6	96	84.783	ENSMICG00000047411	-	54	84.783	Microcebus_murinus
ENSSARG00000000689	LSM6	100	100.000	ENSMOCG00000020049	Lsm6	60	100.000	Microtus_ochrogaster
ENSSARG00000000689	LSM6	100	83.333	ENSMMOG00000007379	-	59	83.333	Mola_mola
ENSSARG00000000689	LSM6	100	91.667	ENSMMOG00000005470	lsm6	60	91.667	Mola_mola
ENSSARG00000000689	LSM6	100	100.000	ENSMODG00000000526	LSM6	60	100.000	Monodelphis_domestica
ENSSARG00000000689	LSM6	100	91.667	ENSMALG00000002419	lsm6	60	91.667	Monopterus_albus
ENSSARG00000000689	LSM6	100	100.000	MGP_CAROLIEiJ_G0031245	Lsm6	60	100.000	Mus_caroli
ENSSARG00000000689	LSM6	100	100.000	ENSMUSG00000031683	Lsm6	60	100.000	Mus_musculus
ENSSARG00000000689	LSM6	100	100.000	MGP_PahariEiJ_G0022851	Lsm6	60	100.000	Mus_pahari
ENSSARG00000000689	LSM6	100	100.000	MGP_SPRETEiJ_G0032365	Lsm6	60	100.000	Mus_spretus
ENSSARG00000000689	LSM6	98	100.000	ENSMPUG00000006936	LSM6	55	100.000	Mustela_putorius_furo
ENSSARG00000000689	LSM6	100	100.000	ENSMLUG00000026355	LSM6	60	100.000	Myotis_lucifugus
ENSSARG00000000689	LSM6	100	100.000	ENSNGAG00000019116	Lsm6	60	100.000	Nannospalax_galili
ENSSARG00000000689	LSM6	100	91.667	ENSNBRG00000004887	lsm6	60	91.667	Neolamprologus_brichardi
ENSSARG00000000689	LSM6	100	100.000	ENSNLEG00000005584	LSM6	60	100.000	Nomascus_leucogenys
ENSSARG00000000689	LSM6	100	97.917	ENSOPRG00000011199	LSM6	59	97.917	Ochotona_princeps
ENSSARG00000000689	LSM6	94	91.111	ENSODEG00000018684	-	58	91.111	Octodon_degus
ENSSARG00000000689	LSM6	100	95.833	ENSODEG00000020420	-	60	95.833	Octodon_degus
ENSSARG00000000689	LSM6	100	97.917	ENSODEG00000002307	-	60	97.917	Octodon_degus
ENSSARG00000000689	LSM6	100	95.833	ENSODEG00000019419	-	60	95.833	Octodon_degus
ENSSARG00000000689	LSM6	100	91.667	ENSONIG00000010005	lsm6	60	91.667	Oreochromis_niloticus
ENSSARG00000000689	LSM6	100	100.000	ENSOANG00000006894	-	63	100.000	Ornithorhynchus_anatinus
ENSSARG00000000689	LSM6	100	100.000	ENSOANG00000006895	-	63	100.000	Ornithorhynchus_anatinus
ENSSARG00000000689	LSM6	100	91.667	ENSORLG00000024158	lsm6	60	91.667	Oryzias_latipes
ENSSARG00000000689	LSM6	100	91.667	ENSORLG00020017383	lsm6	60	91.667	Oryzias_latipes_hni
ENSSARG00000000689	LSM6	100	91.667	ENSORLG00015016903	lsm6	60	91.667	Oryzias_latipes_hsok
ENSSARG00000000689	LSM6	100	91.667	ENSOMEG00000000074	lsm6	60	91.667	Oryzias_melastigma
ENSSARG00000000689	LSM6	100	100.000	ENSOGAG00000026665	-	60	100.000	Otolemur_garnettii
ENSSARG00000000689	LSM6	100	100.000	ENSOGAG00000033153	-	60	100.000	Otolemur_garnettii
ENSSARG00000000689	LSM6	98	100.000	ENSOARG00000011641	-	55	100.000	Ovis_aries
ENSSARG00000000689	LSM6	100	100.000	ENSPPAG00000037929	LSM6	60	100.000	Pan_paniscus
ENSSARG00000000689	LSM6	100	100.000	ENSPPRG00000012806	LSM6	60	100.000	Panthera_pardus
ENSSARG00000000689	LSM6	100	100.000	ENSPTIG00000019769	LSM6	60	100.000	Panthera_tigris_altaica
ENSSARG00000000689	LSM6	100	100.000	ENSPTRG00000016488	LSM6	60	100.000	Pan_troglodytes
ENSSARG00000000689	LSM6	100	100.000	ENSPANG00000006552	LSM6	60	100.000	Papio_anubis
ENSSARG00000000689	LSM6	100	93.750	ENSPKIG00000016176	lsm6	60	93.750	Paramormyrops_kingsleyae
ENSSARG00000000689	LSM6	100	100.000	ENSPSIG00000016942	LSM6	60	100.000	Pelodiscus_sinensis
ENSSARG00000000689	LSM6	100	91.667	ENSPMGG00000018004	lsm6	60	91.667	Periophthalmus_magnuspinnatus
ENSSARG00000000689	LSM6	100	100.000	ENSPEMG00000012410	Lsm6	60	100.000	Peromyscus_maniculatus_bairdii
ENSSARG00000000689	LSM6	100	97.917	ENSPMAG00000006949	lsm6	60	97.917	Petromyzon_marinus
ENSSARG00000000689	LSM6	100	91.667	ENSPFOG00000008881	lsm6	60	91.667	Poecilia_formosa
ENSSARG00000000689	LSM6	100	91.667	ENSPLAG00000003202	lsm6	60	91.667	Poecilia_latipinna
ENSSARG00000000689	LSM6	100	91.667	ENSPMEG00000004000	lsm6	60	91.667	Poecilia_mexicana
ENSSARG00000000689	LSM6	100	91.667	ENSPREG00000023235	lsm6	60	91.667	Poecilia_reticulata
ENSSARG00000000689	LSM6	100	100.000	ENSPPYG00000015105	LSM6	60	100.000	Pongo_abelii
ENSSARG00000000689	LSM6	100	100.000	ENSPCOG00000013899	LSM6	60	100.000	Propithecus_coquereli
ENSSARG00000000689	LSM6	100	91.667	ENSPNYG00000012614	lsm6	60	91.667	Pundamilia_nyererei
ENSSARG00000000689	LSM6	100	93.750	ENSPNAG00000018779	lsm6	60	93.750	Pygocentrus_nattereri
ENSSARG00000000689	LSM6	100	100.000	ENSRNOG00000049370	LOC100360750	60	100.000	Rattus_norvegicus
ENSSARG00000000689	LSM6	100	100.000	ENSRNOG00000030374	Lsm6	60	100.000	Rattus_norvegicus
ENSSARG00000000689	LSM6	100	100.000	ENSRBIG00000027878	LSM6	60	100.000	Rhinopithecus_bieti
ENSSARG00000000689	LSM6	100	100.000	ENSRROG00000024868	LSM6	60	100.000	Rhinopithecus_roxellana
ENSSARG00000000689	LSM6	100	100.000	ENSSBOG00000021229	-	60	100.000	Saimiri_boliviensis_boliviensis
ENSSARG00000000689	LSM6	100	85.417	ENSSBOG00000028103	-	70	85.417	Saimiri_boliviensis_boliviensis
ENSSARG00000000689	LSM6	100	93.750	ENSSFOG00015016480	lsm6	60	93.750	Scleropages_formosus
ENSSARG00000000689	LSM6	100	91.667	ENSSMAG00000004550	lsm6	60	91.667	Scophthalmus_maximus
ENSSARG00000000689	LSM6	100	91.667	ENSSLDG00000020533	lsm6	50	91.667	Seriola_lalandi_dorsalis
ENSSARG00000000689	LSM6	100	100.000	ENSSPUG00000008657	LSM6	60	100.000	Sphenodon_punctatus
ENSSARG00000000689	LSM6	100	91.667	ENSSPAG00000003246	lsm6	60	91.667	Stegastes_partitus
ENSSARG00000000689	LSM6	100	100.000	ENSSSCG00000035973	LSM6	60	100.000	Sus_scrofa
ENSSARG00000000689	LSM6	100	100.000	ENSTGUG00000002663	LSM6	60	100.000	Taeniopygia_guttata
ENSSARG00000000689	LSM6	100	91.667	ENSTRUG00000023398	lsm6	60	91.667	Takifugu_rubripes
ENSSARG00000000689	LSM6	100	91.667	ENSTNIG00000017725	lsm6	60	91.667	Tetraodon_nigroviridis
ENSSARG00000000689	LSM6	100	100.000	ENSTTRG00000004609	LSM6	60	100.000	Tursiops_truncatus
ENSSARG00000000689	LSM6	100	100.000	ENSVPAG00000006922	LSM6	60	100.000	Vicugna_pacos
ENSSARG00000000689	LSM6	100	100.000	ENSXETG00000023683	lsm6	60	100.000	Xenopus_tropicalis
ENSSARG00000000689	LSM6	100	91.667	ENSXMAG00000009606	lsm6	60	91.667	Xiphophorus_maculatus