EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSARG00000000888 (Gene tree)
Gene ID: -
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Sorex_araneus
Status: putative
Strand: Minus strand
Length: 47048 bases
Position: chrGeneScaffold_2420:2226-49273
Accession: 20320
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSARP00000000812	RRM_1	PF00076.22	1.3e-32	1	2
ENSSARP00000000812	RRM_1	PF00076.22	1.3e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSART00000000882	PSPC1-201	1560	-	ENSSARP00000000812	519 (aa)	-	UPI00015809BD

Gene Model

Click here to download ENSSARG00000000888's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSARG00000000888's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSARG00000000888	PSPC1	53	70.652	ENSSARG00000007959	NONO	81	65.500
ENSSARG00000000888	PSPC1	76	47.307	ENSSARG00000006409	SFPQ	81	58.416

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSARG00000000888	PSPC1	100	89.101	ENSG00000121390	PSPC1	100	91.532	Homo_sapiens
ENSSARG00000000888	PSPC1	89	65.199	ENSAPOG00000015946	pspc1	77	73.006	Acanthochromis_polyacanthus
ENSSARG00000000888	PSPC1	100	90.403	ENSAMEG00000017420	PSPC1	100	90.211	Ailuropoda_melanoleuca
ENSSARG00000000888	PSPC1	99	57.169	ENSACIG00000018695	pspc1	78	63.466	Amphilophus_citrinellus
ENSSARG00000000888	PSPC1	89	64.092	ENSAOCG00000005279	pspc1	76	69.343	Amphiprion_ocellaris
ENSSARG00000000888	PSPC1	88	65.096	ENSAPEG00000015927	pspc1	76	69.343	Amphiprion_percula
ENSSARG00000000888	PSPC1	89	57.749	ENSATEG00000004878	pspc1	76	64.096	Anabas_testudineus
ENSSARG00000000888	PSPC1	88	52.411	ENSAPLG00000003643	SFPQ	76	56.174	Anas_platyrhynchos
ENSSARG00000000888	PSPC1	78	85.644	ENSAPLG00000006246	PSPC1	100	85.644	Anas_platyrhynchos
ENSSARG00000000888	PSPC1	89	84.549	ENSACAG00000002093	PSPC1	88	84.764	Anolis_carolinensis
ENSSARG00000000888	PSPC1	90	50.515	ENSACAG00000013307	-	63	54.632	Anolis_carolinensis
ENSSARG00000000888	PSPC1	100	90.403	ENSANAG00000000059	PSPC1	100	90.019	Aotus_nancymaae
ENSSARG00000000888	PSPC1	99	57.278	ENSACLG00000027220	pspc1	87	60.823	Astatotilapia_calliptera
ENSSARG00000000888	PSPC1	89	62.917	ENSAMXG00000036881	pspc1	81	65.376	Astyanax_mexicanus
ENSSARG00000000888	PSPC1	100	89.101	ENSBTAG00000003934	PSPC1	100	88.654	Bos_taurus
ENSSARG00000000888	PSPC1	100	90.403	ENSCJAG00000004554	PSPC1	100	90.019	Callithrix_jacchus
ENSSARG00000000888	PSPC1	100	90.403	ENSCAFG00020002009	PSPC1	100	90.403	Canis_lupus_dingo
ENSSARG00000000888	PSPC1	100	89.101	ENSCHIG00000016708	PSPC1	100	88.654	Capra_hircus
ENSSARG00000000888	PSPC1	77	90.476	ENSTSYG00000032882	PSPC1	93	82.816	Carlito_syrichta
ENSSARG00000000888	PSPC1	100	90.019	ENSCPOG00000000395	PSPC1	100	88.269	Cavia_porcellus
ENSSARG00000000888	PSPC1	100	90.403	ENSCCAG00000033498	PSPC1	100	90.019	Cebus_capucinus
ENSSARG00000000888	PSPC1	100	88.910	ENSCATG00000036434	PSPC1	100	88.719	Cercocebus_atys
ENSSARG00000000888	PSPC1	89	80.645	ENSCLAG00000005241	PSPC1	100	80.645	Chinchilla_lanigera
ENSSARG00000000888	PSPC1	100	83.556	ENSCHOG00000008913	PSPC1	100	83.556	Choloepus_hoffmanni
ENSSARG00000000888	PSPC1	99	81.107	ENSCPBG00000020859	PSPC1	89	87.152	Chrysemys_picta_bellii
ENSSARG00000000888	PSPC1	78	84.444	ENSCANG00000018948	PSPC1	87	88.931	Colobus_angolensis_palliatus
ENSSARG00000000888	PSPC1	100	90.421	ENSCGRG00001018368	Pspc1	100	89.080	Cricetulus_griseus_chok1gshd
ENSSARG00000000888	PSPC1	100	90.421	ENSCGRG00000011724	Pspc1	100	89.080	Cricetulus_griseus_crigri
ENSSARG00000000888	PSPC1	88	60.475	ENSCVAG00000007679	-	78	62.559	Cyprinodon_variegatus
ENSSARG00000000888	PSPC1	99	60.714	ENSDARG00000006621	pspc1	89	65.229	Danio_rerio
ENSSARG00000000888	PSPC1	100	88.337	ENSDNOG00000011078	PSPC1	100	88.145	Dasypus_novemcinctus
ENSSARG00000000888	PSPC1	100	86.807	ENSDORG00000016050	Pspc1	100	85.660	Dipodomys_ordii
ENSSARG00000000888	PSPC1	88	51.653	ENSEBUG00000003964	-	62	64.740	Eptatretus_burgeri
ENSSARG00000000888	PSPC1	55	48.254	ENSEBUG00000010133	pspc1	72	51.273	Eptatretus_burgeri
ENSSARG00000000888	PSPC1	100	90.944	ENSEASG00005000119	PSPC1	100	90.944	Equus_asinus_asinus
ENSSARG00000000888	PSPC1	100	90.944	ENSECAG00000017286	PSPC1	100	90.944	Equus_caballus
ENSSARG00000000888	PSPC1	88	83.019	ENSEEUG00000011288	-	73	91.803	Erinaceus_europaeus
ENSSARG00000000888	PSPC1	99	60.886	ENSELUG00000003746	pspc1	78	74.462	Esox_lucius
ENSSARG00000000888	PSPC1	100	90.403	ENSFCAG00000027841	PSPC1	100	90.403	Felis_catus
ENSSARG00000000888	PSPC1	90	87.580	ENSFALG00000008750	PSPC1	88	87.580	Ficedula_albicollis
ENSSARG00000000888	PSPC1	100	88.247	ENSFDAG00000002617	PSPC1	100	87.669	Fukomys_damarensis
ENSSARG00000000888	PSPC1	76	82.061	ENSGMOG00000015074	pspc1	74	82.061	Gadus_morhua
ENSSARG00000000888	PSPC1	99	81.749	ENSGALG00000017142	PSPC1	99	82.046	Gallus_gallus
ENSSARG00000000888	PSPC1	66	67.529	ENSGAFG00000006327	pspc1	67	70.154	Gambusia_affinis
ENSSARG00000000888	PSPC1	88	59.827	ENSGACG00000014901	pspc1	92	65.443	Gasterosteus_aculeatus
ENSSARG00000000888	PSPC1	99	81.250	ENSGAGG00000019164	PSPC1	89	87.152	Gopherus_agassizii
ENSSARG00000000888	PSPC1	92	51.210	ENSGAGG00000017325	-	62	56.731	Gopherus_agassizii
ENSSARG00000000888	PSPC1	100	88.910	ENSGGOG00000003414	PSPC1	100	88.910	Gorilla_gorilla
ENSSARG00000000888	PSPC1	99	59.962	ENSHBUG00000001139	pspc1	87	63.948	Haplochromis_burtoni
ENSSARG00000000888	PSPC1	100	89.251	ENSHGLG00000018811	PSPC1	100	87.692	Heterocephalus_glaber_female
ENSSARG00000000888	PSPC1	61	91.195	ENSHGLG00100007962	PSPC1	91	91.195	Heterocephalus_glaber_male
ENSSARG00000000888	PSPC1	81	57.273	ENSHCOG00000013251	pspc1	85	61.832	Hippocampus_comes
ENSSARG00000000888	PSPC1	99	63.501	ENSIPUG00000013192	pspc1	81	70.901	Ictalurus_punctatus
ENSSARG00000000888	PSPC1	100	89.484	ENSSTOG00000026833	PSPC1	100	88.719	Ictidomys_tridecemlineatus
ENSSARG00000000888	PSPC1	100	88.889	ENSJJAG00000018334	Pspc1	100	88.506	Jaculus_jaculus
ENSSARG00000000888	PSPC1	89	48.164	ENSKMAG00000013525	-	76	51.756	Kryptolebias_marmoratus
ENSSARG00000000888	PSPC1	98	57.885	ENSLBEG00000004474	pspc1	83	60.811	Labrus_bergylta
ENSSARG00000000888	PSPC1	99	66.364	ENSLACG00000010762	PSPC1	88	79.095	Latimeria_chalumnae
ENSSARG00000000888	PSPC1	99	72.973	ENSLOCG00000010832	pspc1	92	77.730	Lepisosteus_oculatus
ENSSARG00000000888	PSPC1	100	88.506	ENSLAFG00000010968	PSPC1	100	88.506	Loxodonta_africana
ENSSARG00000000888	PSPC1	100	89.101	ENSMFAG00000032728	PSPC1	100	88.910	Macaca_fascicularis
ENSSARG00000000888	PSPC1	100	89.101	ENSMMUG00000020262	PSPC1	100	88.910	Macaca_mulatta
ENSSARG00000000888	PSPC1	100	89.101	ENSMNEG00000027401	PSPC1	100	88.910	Macaca_nemestrina
ENSSARG00000000888	PSPC1	100	90.727	ENSMLEG00000039043	PSPC1	100	90.727	Mandrillus_leucophaeus
ENSSARG00000000888	PSPC1	89	64.163	ENSMAMG00000004333	pspc1	82	65.581	Mastacembelus_armatus
ENSSARG00000000888	PSPC1	99	57.278	ENSMZEG00005005726	pspc1	87	60.823	Maylandia_zebra
ENSSARG00000000888	PSPC1	78	85.468	ENSMGAG00000015134	PSPC1	100	85.468	Meleagris_gallopavo
ENSSARG00000000888	PSPC1	88	89.371	ENSMAUG00000021067	Pspc1	99	84.816	Mesocricetus_auratus
ENSSARG00000000888	PSPC1	100	89.635	ENSMICG00000013970	PSPC1	100	89.635	Microcebus_murinus
ENSSARG00000000888	PSPC1	100	89.655	ENSMOCG00000006060	Pspc1	100	89.080	Microtus_ochrogaster
ENSSARG00000000888	PSPC1	88	43.033	ENSMMOG00000004352	pspc1	58	55.418	Mola_mola
ENSSARG00000000888	PSPC1	93	87.423	ENSMODG00000008029	PSPC1	78	86.804	Monodelphis_domestica
ENSSARG00000000888	PSPC1	89	63.519	ENSMALG00000008914	pspc1	81	64.965	Monopterus_albus
ENSSARG00000000888	PSPC1	100	89.293	MGP_CAROLIEiJ_G0019341	Pspc1	100	88.910	Mus_caroli
ENSSARG00000000888	PSPC1	100	89.484	ENSMUSG00000021938	Pspc1	100	89.101	Mus_musculus
ENSSARG00000000888	PSPC1	100	89.293	MGP_PahariEiJ_G0030359	Pspc1	100	88.910	Mus_pahari
ENSSARG00000000888	PSPC1	100	89.484	MGP_SPRETEiJ_G0020232	Pspc1	100	89.101	Mus_spretus
ENSSARG00000000888	PSPC1	100	90.211	ENSMPUG00000013347	PSPC1	100	89.635	Mustela_putorius_furo
ENSSARG00000000888	PSPC1	100	89.504	ENSMLUG00000017663	PSPC1	100	89.504	Myotis_lucifugus
ENSSARG00000000888	PSPC1	100	88.697	ENSNGAG00000011271	Pspc1	100	88.314	Nannospalax_galili
ENSSARG00000000888	PSPC1	73	64.872	ENSNBRG00000014059	pspc1	76	72.136	Neolamprologus_brichardi
ENSSARG00000000888	PSPC1	100	88.719	ENSNLEG00000001294	PSPC1	100	88.910	Nomascus_leucogenys
ENSSARG00000000888	PSPC1	78	91.406	ENSMEUG00000000476	PSPC1	79	90.234	Notamacropus_eugenii
ENSSARG00000000888	PSPC1	100	79.655	ENSODEG00000019012	-	100	78.897	Octodon_degus
ENSSARG00000000888	PSPC1	100	80.998	ENSODEG00000007817	-	100	81.154	Octodon_degus
ENSSARG00000000888	PSPC1	99	60.038	ENSONIG00000012010	pspc1	79	66.047	Oreochromis_niloticus
ENSSARG00000000888	PSPC1	77	89.975	ENSOANG00000009017	-	100	89.975	Ornithorhynchus_anatinus
ENSSARG00000000888	PSPC1	99	63.443	ENSOANG00000011381	-	99	61.509	Ornithorhynchus_anatinus
ENSSARG00000000888	PSPC1	100	88.910	ENSOCUG00000006153	PSPC1	100	88.719	Oryctolagus_cuniculus
ENSSARG00000000888	PSPC1	89	64.468	ENSORLG00000004232	-	82	62.273	Oryzias_latipes
ENSSARG00000000888	PSPC1	89	62.605	ENSORLG00020000578	PSPC1	82	62.929	Oryzias_latipes_hni
ENSSARG00000000888	PSPC1	89	65.032	ENSORLG00015017480	pspc1	82	62.929	Oryzias_latipes_hsok
ENSSARG00000000888	PSPC1	100	88.994	ENSOGAG00000012643	PSPC1	100	89.293	Otolemur_garnettii
ENSSARG00000000888	PSPC1	100	85.029	ENSOARG00000014163	PSPC1	100	85.029	Ovis_aries
ENSSARG00000000888	PSPC1	90	90.968	ENSPPAG00000009836	PSPC1	98	91.183	Pan_paniscus
ENSSARG00000000888	PSPC1	100	90.403	ENSPPRG00000008833	PSPC1	100	90.403	Panthera_pardus
ENSSARG00000000888	PSPC1	100	77.071	ENSPTIG00000016917	PSPC1	100	76.493	Panthera_tigris_altaica
ENSSARG00000000888	PSPC1	93	88.889	ENSPTRG00000005677	PSPC1	99	88.889	Pan_troglodytes
ENSSARG00000000888	PSPC1	100	88.910	ENSPANG00000001992	PSPC1	100	88.719	Papio_anubis
ENSSARG00000000888	PSPC1	82	72.261	ENSPKIG00000003578	pspc1	81	71.889	Paramormyrops_kingsleyae
ENSSARG00000000888	PSPC1	99	80.645	ENSPSIG00000005168	PSPC1	99	81.696	Pelodiscus_sinensis
ENSSARG00000000888	PSPC1	55	67.230	ENSPMGG00000015135	pspc1	72	71.923	Periophthalmus_magnuspinnatus
ENSSARG00000000888	PSPC1	100	89.655	ENSPEMG00000015214	Pspc1	100	89.272	Peromyscus_maniculatus_bairdii
ENSSARG00000000888	PSPC1	53	45.645	ENSPMAG00000004618	pspc1	78	47.860	Petromyzon_marinus
ENSSARG00000000888	PSPC1	99	87.931	ENSPCIG00000017680	PSPC1	100	87.356	Phascolarctos_cinereus
ENSSARG00000000888	PSPC1	97	60.694	ENSPFOG00000003362	pspc1	84	64.365	Poecilia_formosa
ENSSARG00000000888	PSPC1	99	59.404	ENSPLAG00000011540	pspc1	83	64.365	Poecilia_latipinna
ENSSARG00000000888	PSPC1	99	59.032	ENSPMEG00000008322	pspc1	83	63.920	Poecilia_mexicana
ENSSARG00000000888	PSPC1	99	59.287	ENSPREG00000007786	pspc1	83	63.697	Poecilia_reticulata
ENSSARG00000000888	PSPC1	100	89.635	ENSPPYG00000005186	PSPC1	100	89.060	Pongo_abelii
ENSSARG00000000888	PSPC1	66	88.525	ENSPCAG00000008314	-	66	88.525	Procavia_capensis
ENSSARG00000000888	PSPC1	100	85.468	ENSPCOG00000014364	PSPC1	100	84.895	Propithecus_coquereli
ENSSARG00000000888	PSPC1	100	89.017	ENSPVAG00000005036	PSPC1	100	89.017	Pteropus_vampyrus
ENSSARG00000000888	PSPC1	99	57.656	ENSPNYG00000008893	pspc1	87	60.823	Pundamilia_nyererei
ENSSARG00000000888	PSPC1	99	63.039	ENSPNAG00000016511	pspc1	86	66.106	Pygocentrus_nattereri
ENSSARG00000000888	PSPC1	100	89.272	ENSRNOG00000020782	Pspc1	100	89.080	Rattus_norvegicus
ENSSARG00000000888	PSPC1	93	90.349	ENSRBIG00000036057	PSPC1	97	91.277	Rhinopithecus_bieti
ENSSARG00000000888	PSPC1	100	89.101	ENSRROG00000036334	PSPC1	100	88.719	Rhinopithecus_roxellana
ENSSARG00000000888	PSPC1	80	87.409	ENSSBOG00000028172	PSPC1	90	84.783	Saimiri_boliviensis_boliviensis
ENSSARG00000000888	PSPC1	100	87.429	ENSSHAG00000004696	PSPC1	100	86.857	Sarcophilus_harrisii
ENSSARG00000000888	PSPC1	82	72.941	ENSSFOG00015001395	pspc1	89	72.664	Scleropages_formosus
ENSSARG00000000888	PSPC1	89	61.297	ENSSMAG00000001761	pspc1	82	69.091	Scophthalmus_maximus
ENSSARG00000000888	PSPC1	89	63.286	ENSSDUG00000010651	pspc1	76	68.372	Seriola_dumerili
ENSSARG00000000888	PSPC1	89	63.420	ENSSLDG00000004284	pspc1	81	64.019	Seriola_lalandi_dorsalis
ENSSARG00000000888	PSPC1	99	76.460	ENSSPUG00000008550	PSPC1	99	75.895	Sphenodon_punctatus
ENSSARG00000000888	PSPC1	90	45.996	ENSSPUG00000001136	-	53	52.355	Sphenodon_punctatus
ENSSARG00000000888	PSPC1	89	63.299	ENSSPAG00000001921	pspc1	77	67.209	Stegastes_partitus
ENSSARG00000000888	PSPC1	100	90.038	ENSSSCG00000009569	PSPC1	100	89.060	Sus_scrofa
ENSSARG00000000888	PSPC1	90	87.580	ENSTGUG00000011295	PSPC1	100	87.580	Taeniopygia_guttata
ENSSARG00000000888	PSPC1	89	58.849	ENSTRUG00000011335	pspc1	77	60.680	Takifugu_rubripes
ENSSARG00000000888	PSPC1	89	59.483	ENSTNIG00000010358	pspc1	84	60.808	Tetraodon_nigroviridis
ENSSARG00000000888	PSPC1	100	70.385	ENSTBEG00000002361	PSPC1	100	68.846	Tupaia_belangeri
ENSSARG00000000888	PSPC1	100	90.385	ENSTTRG00000003343	PSPC1	100	89.210	Tursiops_truncatus
ENSSARG00000000888	PSPC1	61	95.625	ENSUAMG00000012309	PSPC1	92	95.312	Ursus_americanus
ENSSARG00000000888	PSPC1	93	90.144	ENSUMAG00000013993	PSPC1	97	91.064	Ursus_maritimus
ENSSARG00000000888	PSPC1	77	90.727	ENSVPAG00000010029	PSPC1	100	90.727	Vicugna_pacos
ENSSARG00000000888	PSPC1	100	90.403	ENSVVUG00000006414	PSPC1	100	90.403	Vulpes_vulpes
ENSSARG00000000888	PSPC1	69	65.479	ENSXCOG00000017438	pspc1	77	69.325	Xiphophorus_couchianus
ENSSARG00000000888	PSPC1	69	65.753	ENSXMAG00000007929	pspc1	77	69.632	Xiphophorus_maculatus