EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSARG00000003643 (Gene tree)
Gene ID: -
Gene Symbol: CPSF1
Alias: CPSF160
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Sorex_araneus
Status: putative
Strand: Minus strand
Length: 11865 bases
Position: chrGeneScaffold_5791:6900-18764
Accession: 2324
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSARP00000003373	CPSF_A	PF03178.15	5.9e-87	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSART00000003728	CPSF1-201	4146	-	ENSSARP00000003373	1382 (aa)	-	UPI0001580B41

Gene Model

Click here to download ENSSARG00000003643's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSARG00000003643's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSARG00000003643	CPSF1	92	97.917	ENSG00000071894	CPSF1	89	97.917	Homo_sapiens
ENSSARG00000003643	CPSF1	92	74.516	ENSAPOG00000019621	cpsf1	89	74.745	Acanthochromis_polyacanthus
ENSSARG00000003643	CPSF1	88	92.078	ENSAMEG00000005557	CPSF1	88	92.078	Ailuropoda_melanoleuca
ENSSARG00000003643	CPSF1	92	74.758	ENSACIG00000006112	cpsf1	89	75.000	Amphilophus_citrinellus
ENSSARG00000003643	CPSF1	92	76.103	ENSAOCG00000007120	cpsf1	89	76.183	Amphiprion_ocellaris
ENSSARG00000003643	CPSF1	92	76.122	ENSAPEG00000005755	cpsf1	89	76.362	Amphiprion_percula
ENSSARG00000003643	CPSF1	92	74.804	ENSATEG00000011097	cpsf1	89	74.883	Anabas_testudineus
ENSSARG00000003643	CPSF1	88	89.583	ENSACAG00000009655	CPSF1	92	89.583	Anolis_carolinensis
ENSSARG00000003643	CPSF1	92	95.833	ENSANAG00000036514	CPSF1	89	95.833	Aotus_nancymaae
ENSSARG00000003643	CPSF1	92	75.118	ENSACLG00000012231	cpsf1	89	75.118	Astatotilapia_calliptera
ENSSARG00000003643	CPSF1	90	73.624	ENSAMXG00000008485	cpsf1	90	73.952	Astyanax_mexicanus
ENSSARG00000003643	CPSF1	92	95.833	ENSBTAG00000008355	CPSF1	87	95.833	Bos_taurus
ENSSARG00000003643	CPSF1	87	31.755	WBGene00022301	cpsf-1	95	32.029	Caenorhabditis_elegans
ENSSARG00000003643	CPSF1	92	97.917	ENSCJAG00000021421	CPSF1	89	97.917	Callithrix_jacchus
ENSSARG00000003643	CPSF1	88	93.371	ENSCAFG00000001600	CPSF1	96	92.750	Canis_familiaris
ENSSARG00000003643	CPSF1	92	97.917	ENSCAFG00020020821	CPSF1	89	97.917	Canis_lupus_dingo
ENSSARG00000003643	CPSF1	92	95.833	ENSCHIG00000015833	CPSF1	89	95.833	Capra_hircus
ENSSARG00000003643	CPSF1	92	97.917	ENSTSYG00000028560	CPSF1	89	97.917	Carlito_syrichta
ENSSARG00000003643	CPSF1	88	93.209	ENSCAPG00000014921	CPSF1	89	93.209	Cavia_aperea
ENSSARG00000003643	CPSF1	92	100.000	ENSCPOG00000011448	CPSF1	90	100.000	Cavia_porcellus
ENSSARG00000003643	CPSF1	92	97.917	ENSCCAG00000037658	CPSF1	89	97.917	Cebus_capucinus
ENSSARG00000003643	CPSF1	92	100.000	ENSCATG00000037234	CPSF1	89	100.000	Cercocebus_atys
ENSSARG00000003643	CPSF1	92	100.000	ENSCLAG00000012166	CPSF1	89	100.000	Chinchilla_lanigera
ENSSARG00000003643	CPSF1	92	100.000	ENSCSAG00000008502	CPSF1	89	100.000	Chlorocebus_sabaeus
ENSSARG00000003643	CPSF1	92	85.417	ENSCPBG00000018910	CPSF1	86	85.417	Chrysemys_picta_bellii
ENSSARG00000003643	CPSF1	91	56.250	ENSCING00000000514	-	92	56.250	Ciona_intestinalis
ENSSARG00000003643	CPSF1	92	54.167	ENSCSAVG00000002293	-	89	54.167	Ciona_savignyi
ENSSARG00000003643	CPSF1	88	88.691	ENSCANG00000032760	CPSF1	86	88.691	Colobus_angolensis_palliatus
ENSSARG00000003643	CPSF1	92	97.917	ENSCGRG00001016344	Cpsf1	89	97.917	Cricetulus_griseus_chok1gshd
ENSSARG00000003643	CPSF1	92	97.917	ENSCGRG00000003118	Cpsf1	89	97.917	Cricetulus_griseus_crigri
ENSSARG00000003643	CPSF1	92	75.403	ENSCSEG00000013464	cpsf1	92	74.272	Cynoglossus_semilaevis
ENSSARG00000003643	CPSF1	82	73.168	ENSCVAG00000014059	cpsf1	83	73.352	Cyprinodon_variegatus
ENSSARG00000003643	CPSF1	92	76.621	ENSDARG00000034178	cpsf1	89	76.701	Danio_rerio
ENSSARG00000003643	CPSF1	88	92.724	ENSDORG00000006278	Cpsf1	88	92.724	Dipodomys_ordii
ENSSARG00000003643	CPSF1	91	47.917	FBgn0024698	Cpsf160	89	47.917	Drosophila_melanogaster
ENSSARG00000003643	CPSF1	75	97.987	ENSETEG00000006022	CPSF1	75	97.987	Echinops_telfairi
ENSSARG00000003643	CPSF1	92	97.917	ENSEASG00005010774	CPSF1	89	97.917	Equus_asinus_asinus
ENSSARG00000003643	CPSF1	92	97.917	ENSECAG00000022209	CPSF1	89	97.917	Equus_caballus
ENSSARG00000003643	CPSF1	92	97.917	ENSEEUG00000000471	CPSF1	89	97.917	Erinaceus_europaeus
ENSSARG00000003643	CPSF1	92	74.980	ENSELUG00000012271	cpsf1	91	74.510	Esox_lucius
ENSSARG00000003643	CPSF1	92	100.000	ENSFDAG00000016060	CPSF1	89	100.000	Fukomys_damarensis
ENSSARG00000003643	CPSF1	92	73.878	ENSFHEG00000016801	cpsf1	89	73.958	Fundulus_heteroclitus
ENSSARG00000003643	CPSF1	92	74.297	ENSGMOG00000000796	cpsf1	89	74.719	Gadus_morhua
ENSSARG00000003643	CPSF1	87	72.051	ENSGAFG00000018890	cpsf1	89	72.393	Gambusia_affinis
ENSSARG00000003643	CPSF1	92	75.661	ENSGACG00000008703	cpsf1	95	74.319	Gasterosteus_aculeatus
ENSSARG00000003643	CPSF1	92	85.417	ENSGAGG00000004276	CPSF1	91	83.888	Gopherus_agassizii
ENSSARG00000003643	CPSF1	92	97.917	ENSGGOG00000016185	CPSF1	89	97.917	Gorilla_gorilla
ENSSARG00000003643	CPSF1	92	76.774	ENSHBUG00000018900	cpsf1	89	76.855	Haplochromis_burtoni
ENSSARG00000003643	CPSF1	92	100.000	ENSHGLG00000016139	CPSF1	89	100.000	Heterocephalus_glaber_female
ENSSARG00000003643	CPSF1	92	100.000	ENSHGLG00100009750	CPSF1	89	100.000	Heterocephalus_glaber_male
ENSSARG00000003643	CPSF1	92	74.074	ENSHCOG00000018509	cpsf1	89	74.232	Hippocampus_comes
ENSSARG00000003643	CPSF1	92	73.163	ENSIPUG00000011259	cpsf1	89	73.163	Ictalurus_punctatus
ENSSARG00000003643	CPSF1	88	92.512	ENSSTOG00000009957	CPSF1	88	92.512	Ictidomys_tridecemlineatus
ENSSARG00000003643	CPSF1	92	97.917	ENSJJAG00000023002	Cpsf1	89	97.917	Jaculus_jaculus
ENSSARG00000003643	CPSF1	82	84.615	ENSKMAG00000001940	cpsf1	87	84.615	Kryptolebias_marmoratus
ENSSARG00000003643	CPSF1	92	73.862	ENSLBEG00000003601	cpsf1	89	74.214	Labrus_bergylta
ENSSARG00000003643	CPSF1	79	81.250	ENSLACG00000000233	CPSF1	80	81.250	Latimeria_chalumnae
ENSSARG00000003643	CPSF1	92	77.083	ENSLOCG00000008484	cpsf1	89	77.083	Lepisosteus_oculatus
ENSSARG00000003643	CPSF1	88	91.673	ENSLAFG00000022601	CPSF1	88	91.673	Loxodonta_africana
ENSSARG00000003643	CPSF1	92	100.000	ENSMFAG00000037013	CPSF1	89	100.000	Macaca_fascicularis
ENSSARG00000003643	CPSF1	92	100.000	ENSMMUG00000007380	CPSF1	89	100.000	Macaca_mulatta
ENSSARG00000003643	CPSF1	88	92.805	ENSMNEG00000043564	CPSF1	89	92.805	Macaca_nemestrina
ENSSARG00000003643	CPSF1	92	100.000	ENSMLEG00000043010	CPSF1	90	100.000	Mandrillus_leucophaeus
ENSSARG00000003643	CPSF1	92	74.980	ENSMAMG00000003803	cpsf1	89	75.294	Mastacembelus_armatus
ENSSARG00000003643	CPSF1	91	74.758	ENSMZEG00005001168	cpsf1	89	74.919	Maylandia_zebra
ENSSARG00000003643	CPSF1	92	97.917	ENSMAUG00000003601	Cpsf1	89	97.917	Mesocricetus_auratus
ENSSARG00000003643	CPSF1	92	95.833	ENSMICG00000015767	CPSF1	89	95.833	Microcebus_murinus
ENSSARG00000003643	CPSF1	92	100.000	ENSMOCG00000022758	Cpsf1	89	100.000	Microtus_ochrogaster
ENSSARG00000003643	CPSF1	92	75.745	ENSMMOG00000021245	cpsf1	89	75.826	Mola_mola
ENSSARG00000003643	CPSF1	92	91.667	ENSMODG00000010755	CPSF1	89	91.667	Monodelphis_domestica
ENSSARG00000003643	CPSF1	92	74.391	ENSMALG00000020545	cpsf1	89	74.548	Monopterus_albus
ENSSARG00000003643	CPSF1	92	97.917	MGP_CAROLIEiJ_G0019936	Cpsf1	89	97.917	Mus_caroli
ENSSARG00000003643	CPSF1	92	97.917	ENSMUSG00000034022	Cpsf1	89	97.917	Mus_musculus
ENSSARG00000003643	CPSF1	92	100.000	MGP_PahariEiJ_G0019946	Cpsf1	89	100.000	Mus_pahari
ENSSARG00000003643	CPSF1	92	97.917	MGP_SPRETEiJ_G0020839	Cpsf1	89	97.917	Mus_spretus
ENSSARG00000003643	CPSF1	88	92.724	ENSMPUG00000006419	CPSF1	85	92.724	Mustela_putorius_furo
ENSSARG00000003643	CPSF1	92	97.917	ENSNGAG00000022460	Cpsf1	89	97.917	Nannospalax_galili
ENSSARG00000003643	CPSF1	92	71.797	ENSNBRG00000000813	cpsf1	89	71.797	Neolamprologus_brichardi
ENSSARG00000003643	CPSF1	76	97.917	ENSNLEG00000010633	-	84	97.917	Nomascus_leucogenys
ENSSARG00000003643	CPSF1	73	98.413	ENSMEUG00000014922	CPSF1	74	98.413	Notamacropus_eugenii
ENSSARG00000003643	CPSF1	59	97.449	ENSOPRG00000004693	-	67	97.449	Ochotona_princeps
ENSSARG00000003643	CPSF1	92	100.000	ENSODEG00000013995	CPSF1	89	100.000	Octodon_degus
ENSSARG00000003643	CPSF1	92	77.016	ENSONIG00000007676	cpsf1	89	77.177	Oreochromis_niloticus
ENSSARG00000003643	CPSF1	59	92.143	ENSOANG00000010716	CPSF1	87	92.143	Ornithorhynchus_anatinus
ENSSARG00000003643	CPSF1	92	74.171	ENSORLG00000013544	cpsf1	92	86.831	Oryzias_latipes
ENSSARG00000003643	CPSF1	92	74.171	ENSORLG00020021693	cpsf1	92	86.831	Oryzias_latipes_hni
ENSSARG00000003643	CPSF1	92	74.270	ENSORLG00015009979	cpsf1	89	74.270	Oryzias_latipes_hsok
ENSSARG00000003643	CPSF1	92	74.209	ENSOMEG00000011849	cpsf1	89	74.288	Oryzias_melastigma
ENSSARG00000003643	CPSF1	92	95.833	ENSOGAG00000000315	CPSF1	89	95.833	Otolemur_garnettii
ENSSARG00000003643	CPSF1	92	97.917	ENSPPAG00000019280	CPSF1	89	97.917	Pan_paniscus
ENSSARG00000003643	CPSF1	92	97.917	ENSPTRG00000051253	-	89	97.917	Pan_troglodytes
ENSSARG00000003643	CPSF1	92	97.917	ENSPTRG00000049288	-	89	97.917	Pan_troglodytes
ENSSARG00000003643	CPSF1	88	92.805	ENSPANG00000015005	CPSF1	89	92.805	Papio_anubis
ENSSARG00000003643	CPSF1	92	77.438	ENSPKIG00000002582	cpsf1	94	77.518	Paramormyrops_kingsleyae
ENSSARG00000003643	CPSF1	92	91.667	ENSPCIG00000009035	CPSF1	89	91.667	Phascolarctos_cinereus
ENSSARG00000003643	CPSF1	92	73.291	ENSPFOG00000012870	cpsf1	89	73.527	Poecilia_formosa
ENSSARG00000003643	CPSF1	92	72.998	ENSPREG00000016307	cpsf1	89	73.391	Poecilia_reticulata
ENSSARG00000003643	CPSF1	92	97.917	ENSPPYG00000018973	CPSF1	88	97.917	Pongo_abelii
ENSSARG00000003643	CPSF1	83	94.444	ENSPCAG00000011541	CPSF1	82	94.444	Procavia_capensis
ENSSARG00000003643	CPSF1	92	95.833	ENSPCOG00000020001	CPSF1	89	95.833	Propithecus_coquereli
ENSSARG00000003643	CPSF1	83	98.722	ENSPVAG00000006761	CPSF1	81	98.722	Pteropus_vampyrus
ENSSARG00000003643	CPSF1	92	75.616	ENSPNYG00000004906	cpsf1	89	75.695	Pundamilia_nyererei
ENSSARG00000003643	CPSF1	92	75.000	ENSPNAG00000024395	cpsf1	89	75.000	Pygocentrus_nattereri
ENSSARG00000003643	CPSF1	92	100.000	ENSRNOG00000030705	Cpsf1	89	100.000	Rattus_norvegicus
ENSSARG00000003643	CPSF1	92	100.000	ENSRBIG00000044907	CPSF1	89	100.000	Rhinopithecus_bieti
ENSSARG00000003643	CPSF1	92	100.000	ENSRROG00000044861	CPSF1	89	100.000	Rhinopithecus_roxellana
ENSSARG00000003643	CPSF1	88	92.805	ENSSBOG00000027177	CPSF1	89	92.805	Saimiri_boliviensis_boliviensis
ENSSARG00000003643	CPSF1	92	91.667	ENSSHAG00000006500	CPSF1	89	91.667	Sarcophilus_harrisii
ENSSARG00000003643	CPSF1	92	76.917	ENSSFOG00015004606	cpsf1	91	77.182	Scleropages_formosus
ENSSARG00000003643	CPSF1	92	75.020	ENSSMAG00000020547	cpsf1	89	75.098	Scophthalmus_maximus
ENSSARG00000003643	CPSF1	92	76.087	ENSSDUG00000001100	cpsf1	89	76.329	Seriola_dumerili
ENSSARG00000003643	CPSF1	92	76.229	ENSSLDG00000003619	cpsf1	89	76.471	Seriola_lalandi_dorsalis
ENSSARG00000003643	CPSF1	88	84.032	ENSSPUG00000014396	CPSF1	89	84.032	Sphenodon_punctatus
ENSSARG00000003643	CPSF1	92	74.725	ENSSPAG00000005349	cpsf1	89	75.118	Stegastes_partitus
ENSSARG00000003643	CPSF1	92	97.917	ENSSSCG00000005906	CPSF1	89	97.917	Sus_scrofa
ENSSARG00000003643	CPSF1	88	74.317	ENSTRUG00000013134	cpsf1	89	74.473	Takifugu_rubripes
ENSSARG00000003643	CPSF1	92	75.760	ENSTNIG00000014027	cpsf1	89	75.840	Tetraodon_nigroviridis
ENSSARG00000003643	CPSF1	68	86.085	ENSTBEG00000001756	CPSF1	81	86.085	Tupaia_belangeri
ENSSARG00000003643	CPSF1	81	97.917	ENSTTRG00000001937	CPSF1	79	97.917	Tursiops_truncatus
ENSSARG00000003643	CPSF1	88	94.018	ENSUAMG00000006476	CPSF1	87	94.018	Ursus_americanus
ENSSARG00000003643	CPSF1	92	74.698	ENSXCOG00000003608	cpsf1	89	75.101	Xiphophorus_couchianus
ENSSARG00000003643	CPSF1	92	74.175	ENSXMAG00000005798	cpsf1	89	74.417	Xiphophorus_maculatus