EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSARG00000004147 (Gene tree)
Gene ID: -
Gene Symbol: UPF3B
Alias: HUPF3B|MRX62|RENT3B|UPF3BP1|UPF3BP2|UPF3BP3|UPF3X
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Sorex_araneus
Status: putative
Strand: Plus strand
Length: 18971 bases
Position: chrscaffold_234774:547-19517
Accession: 20439
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSARP00000003757	Smg4_UPF3	PF03467.15	1.1e-52	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSART00000004139	UPF3B-201	1299	-	ENSSARP00000003757	432 (aa)	-	UPI0001581423

Gene Model

Click here to download ENSSARG00000004147's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSARG00000004147's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSARG00000004147	UPF3B	100	84.562	ENSG00000125351	UPF3B	89	85.023	Homo_sapiens
ENSSARG00000004147	UPF3B	100	52.993	ENSAPOG00000012775	upf3b	92	51.598	Acanthochromis_polyacanthus
ENSSARG00000004147	UPF3B	100	85.945	ENSAMEG00000000163	UPF3B	89	85.945	Ailuropoda_melanoleuca
ENSSARG00000004147	UPF3B	93	54.854	ENSACIG00000013582	upf3b	85	50.732	Amphilophus_citrinellus
ENSSARG00000004147	UPF3B	100	52.847	ENSAOCG00000000706	upf3b	92	50.913	Amphiprion_ocellaris
ENSSARG00000004147	UPF3B	100	53.986	ENSAPEG00000005545	upf3b	92	53.318	Amphiprion_percula
ENSSARG00000004147	UPF3B	94	58.019	ENSATEG00000018742	upf3b	86	53.938	Anabas_testudineus
ENSSARG00000004147	UPF3B	92	53.398	ENSACAG00000001540	UPF3A	92	49.633	Anolis_carolinensis
ENSSARG00000004147	UPF3B	99	65.446	ENSACAG00000003625	UPF3B	90	64.598	Anolis_carolinensis
ENSSARG00000004147	UPF3B	100	85.714	ENSANAG00000021894	-	84	95.074	Aotus_nancymaae
ENSSARG00000004147	UPF3B	100	77.880	ENSANAG00000025598	-	79	86.885	Aotus_nancymaae
ENSSARG00000004147	UPF3B	93	58.981	ENSACLG00000001649	upf3b	86	55.882	Astatotilapia_calliptera
ENSSARG00000004147	UPF3B	63	93.548	ENSBTAG00000035615	UPF3B	83	95.567	Bos_taurus
ENSSARG00000004147	UPF3B	100	85.253	ENSCJAG00000004975	UPF3B	84	94.581	Callithrix_jacchus
ENSSARG00000004147	UPF3B	100	85.880	ENSCAFG00000018426	UPF3B	89	85.880	Canis_familiaris
ENSSARG00000004147	UPF3B	100	80.556	ENSCAFG00020004074	UPF3B	79	92.308	Canis_lupus_dingo
ENSSARG00000004147	UPF3B	100	86.406	ENSCHIG00000000247	-	89	86.406	Capra_hircus
ENSSARG00000004147	UPF3B	97	86.288	ENSCHIG00000018011	-	83	95.567	Capra_hircus
ENSSARG00000004147	UPF3B	100	58.333	ENSCHIG00000011454	-	90	55.787	Capra_hircus
ENSSARG00000004147	UPF3B	100	82.870	ENSTSYG00000014690	UPF3B	88	86.423	Carlito_syrichta
ENSSARG00000004147	UPF3B	51	90.196	ENSCCAG00000021964	-	73	92.086	Cebus_capucinus
ENSSARG00000004147	UPF3B	100	84.562	ENSCATG00000017506	UPF3B	84	95.074	Cercocebus_atys
ENSSARG00000004147	UPF3B	100	81.336	ENSCLAG00000003260	UPF3B	89	80.184	Chinchilla_lanigera
ENSSARG00000004147	UPF3B	100	84.562	ENSCSAG00000018348	UPF3B	89	85.023	Chlorocebus_sabaeus
ENSSARG00000004147	UPF3B	99	63.182	ENSCPBG00000020685	UPF3B	90	62.557	Chrysemys_picta_bellii
ENSSARG00000004147	UPF3B	66	93.548	ENSCANG00000029220	UPF3B	84	95.074	Colobus_angolensis_palliatus
ENSSARG00000004147	UPF3B	100	77.880	ENSCGRG00001006858	-	89	75.688	Cricetulus_griseus_chok1gshd
ENSSARG00000004147	UPF3B	72	78.914	ENSCGRG00001013643	-	79	72.131	Cricetulus_griseus_chok1gshd
ENSSARG00000004147	UPF3B	100	77.650	ENSCGRG00000007627	Upf3b	100	75.459	Cricetulus_griseus_crigri
ENSSARG00000004147	UPF3B	92	56.127	ENSCSEG00000002046	upf3b	82	54.703	Cynoglossus_semilaevis
ENSSARG00000004147	UPF3B	96	52.995	ENSCVAG00000005030	upf3b	92	52.315	Cyprinodon_variegatus
ENSSARG00000004147	UPF3B	93	56.068	ENSDARG00000000489	upf3b	87	55.294	Danio_rerio
ENSSARG00000004147	UPF3B	100	85.484	ENSDNOG00000008665	UPF3B	89	85.484	Dasypus_novemcinctus
ENSSARG00000004147	UPF3B	100	81.481	ENSDORG00000006077	Upf3b	89	79.167	Dipodomys_ordii
ENSSARG00000004147	UPF3B	99	79.446	ENSEASG00005012919	UPF3B	79	90.164	Equus_asinus_asinus
ENSSARG00000004147	UPF3B	99	79.446	ENSECAG00000016947	UPF3B	89	78.753	Equus_caballus
ENSSARG00000004147	UPF3B	72	60.383	ENSELUG00000020389	upf3b	92	51.178	Esox_lucius
ENSSARG00000004147	UPF3B	100	85.321	ENSFCAG00000004388	UPF3B	89	85.780	Felis_catus
ENSSARG00000004147	UPF3B	99	65.265	ENSFALG00000001569	UPF3B	88	65.247	Ficedula_albicollis
ENSSARG00000004147	UPF3B	100	81.567	ENSFDAG00000018869	UPF3B	89	80.184	Fukomys_damarensis
ENSSARG00000004147	UPF3B	93	54.146	ENSFHEG00000017895	upf3b	90	50.572	Fundulus_heteroclitus
ENSSARG00000004147	UPF3B	93	52.798	ENSGMOG00000001621	upf3b	85	52.311	Gadus_morhua
ENSSARG00000004147	UPF3B	99	62.697	ENSGALG00000008618	UPF3B	88	65.446	Gallus_gallus
ENSSARG00000004147	UPF3B	97	55.660	ENSGAFG00000000829	upf3b	89	54.157	Gambusia_affinis
ENSSARG00000004147	UPF3B	91	57.037	ENSGACG00000017435	upf3b	85	52.019	Gasterosteus_aculeatus
ENSSARG00000004147	UPF3B	99	66.136	ENSGAGG00000001219	UPF3B	90	65.525	Gopherus_agassizii
ENSSARG00000004147	UPF3B	100	84.562	ENSGGOG00000023995	UPF3B	84	95.074	Gorilla_gorilla
ENSSARG00000004147	UPF3B	93	58.981	ENSHBUG00000017393	upf3b	86	55.637	Haplochromis_burtoni
ENSSARG00000004147	UPF3B	100	82.028	ENSHGLG00000019582	-	89	80.415	Heterocephalus_glaber_female
ENSSARG00000004147	UPF3B	68	77.551	ENSHGLG00000011189	-	82	73.481	Heterocephalus_glaber_female
ENSSARG00000004147	UPF3B	68	77.551	ENSHGLG00100001889	-	82	72.652	Heterocephalus_glaber_male
ENSSARG00000004147	UPF3B	100	79.398	ENSHGLG00100002042	-	89	78.111	Heterocephalus_glaber_male
ENSSARG00000004147	UPF3B	100	53.864	ENSHCOG00000017004	upf3b	88	54.265	Hippocampus_comes
ENSSARG00000004147	UPF3B	100	56.823	ENSIPUG00000019249	upf3b	92	56.757	Ictalurus_punctatus
ENSSARG00000004147	UPF3B	100	82.028	ENSSTOG00000001101	UPF3B	89	80.415	Ictidomys_tridecemlineatus
ENSSARG00000004147	UPF3B	100	79.954	ENSJJAG00000000053	Upf3b	89	77.523	Jaculus_jaculus
ENSSARG00000004147	UPF3B	95	55.263	ENSKMAG00000020300	upf3b	89	53.810	Kryptolebias_marmoratus
ENSSARG00000004147	UPF3B	58	67.984	ENSLBEG00000028689	upf3b	53	66.135	Labrus_bergylta
ENSSARG00000004147	UPF3B	100	58.499	ENSLACG00000008691	UPF3B	92	59.382	Latimeria_chalumnae
ENSSARG00000004147	UPF3B	98	51.370	ENSLOCG00000002665	upf3a	86	43.636	Lepisosteus_oculatus
ENSSARG00000004147	UPF3B	64	67.266	ENSLOCG00000015238	upf3b	91	57.346	Lepisosteus_oculatus
ENSSARG00000004147	UPF3B	100	79.724	ENSLAFG00000001267	UPF3B	89	78.111	Loxodonta_africana
ENSSARG00000004147	UPF3B	100	84.332	ENSMFAG00000045414	UPF3B	84	95.074	Macaca_fascicularis
ENSSARG00000004147	UPF3B	100	84.332	ENSMMUG00000020222	UPF3B	84	95.074	Macaca_mulatta
ENSSARG00000004147	UPF3B	100	84.332	ENSMNEG00000039794	UPF3B	84	95.074	Macaca_nemestrina
ENSSARG00000004147	UPF3B	100	84.562	ENSMLEG00000010999	UPF3B	84	95.074	Mandrillus_leucophaeus
ENSSARG00000004147	UPF3B	93	58.738	ENSMZEG00005007871	upf3b	86	55.637	Maylandia_zebra
ENSSARG00000004147	UPF3B	91	61.707	ENSMGAG00000007728	UPF3B	99	62.935	Meleagris_gallopavo
ENSSARG00000004147	UPF3B	96	50.000	ENSMGAG00000014837	UPF3A	89	48.698	Meleagris_gallopavo
ENSSARG00000004147	UPF3B	100	79.724	ENSMAUG00000008705	Upf3b	89	79.817	Mesocricetus_auratus
ENSSARG00000004147	UPF3B	63	93.119	ENSMICG00000001743	UPF3B	81	95.567	Microcebus_murinus
ENSSARG00000004147	UPF3B	100	81.944	ENSMOCG00000017893	Upf3b	89	81.336	Microtus_ochrogaster
ENSSARG00000004147	UPF3B	97	53.472	ENSMMOG00000004183	upf3b	92	51.270	Mola_mola
ENSSARG00000004147	UPF3B	98	51.810	ENSMODG00000003159	UPF3A	96	47.826	Monodelphis_domestica
ENSSARG00000004147	UPF3B	99	68.037	ENSMODG00000010232	UPF3B	99	66.514	Monodelphis_domestica
ENSSARG00000004147	UPF3B	55	70.124	ENSMALG00000008042	upf3b	86	55.097	Monopterus_albus
ENSSARG00000004147	UPF3B	100	78.571	MGP_CAROLIEiJ_G0032999	Upf3b	100	80.000	Mus_caroli
ENSSARG00000004147	UPF3B	100	78.341	ENSMUSG00000036572	Upf3b	99	80.000	Mus_musculus
ENSSARG00000004147	UPF3B	100	78.802	MGP_PahariEiJ_G0031543	Upf3b	100	80.000	Mus_pahari
ENSSARG00000004147	UPF3B	100	78.341	MGP_SPRETEiJ_G0034152	Upf3b	100	80.000	Mus_spretus
ENSSARG00000004147	UPF3B	97	82.660	ENSMPUG00000001531	UPF3B	89	81.235	Mustela_putorius_furo
ENSSARG00000004147	UPF3B	100	83.871	ENSMLUG00000010821	UPF3B	89	82.028	Myotis_lucifugus
ENSSARG00000004147	UPF3B	100	75.806	ENSNGAG00000008231	Upf3b	89	74.541	Nannospalax_galili
ENSSARG00000004147	UPF3B	93	44.608	ENSNLEG00000007563	UPF3A	80	48.537	Nomascus_leucogenys
ENSSARG00000004147	UPF3B	100	84.793	ENSNLEG00000014897	UPF3B	89	85.253	Nomascus_leucogenys
ENSSARG00000004147	UPF3B	71	83.226	ENSMEUG00000015615	UPF3B	81	83.333	Notamacropus_eugenii
ENSSARG00000004147	UPF3B	100	75.346	ENSODEG00000002186	-	89	73.502	Octodon_degus
ENSSARG00000004147	UPF3B	100	54.955	ENSONIG00000002536	upf3b	92	53.933	Oreochromis_niloticus
ENSSARG00000004147	UPF3B	100	85.714	ENSOCUG00000010213	UPF3B	89	85.714	Oryctolagus_cuniculus
ENSSARG00000004147	UPF3B	96	54.292	ENSORLG00000001026	upf3b	89	54.098	Oryzias_latipes
ENSSARG00000004147	UPF3B	96	53.828	ENSORLG00020003758	upf3b	89	53.630	Oryzias_latipes_hni
ENSSARG00000004147	UPF3B	96	54.673	ENSORLG00015012954	upf3b	89	53.864	Oryzias_latipes_hsok
ENSSARG00000004147	UPF3B	96	52.914	ENSOMEG00000014736	upf3b	89	52.133	Oryzias_melastigma
ENSSARG00000004147	UPF3B	100	82.488	ENSOGAG00000004643	-	89	80.645	Otolemur_garnettii
ENSSARG00000004147	UPF3B	97	73.349	ENSOGAG00000033003	-	89	72.170	Otolemur_garnettii
ENSSARG00000004147	UPF3B	99	62.731	ENSOARG00000007869	-	98	59.259	Ovis_aries
ENSSARG00000004147	UPF3B	100	85.812	ENSOARG00000016051	-	89	85.812	Ovis_aries
ENSSARG00000004147	UPF3B	100	84.562	ENSPPAG00000040390	UPF3B	84	95.074	Pan_paniscus
ENSSARG00000004147	UPF3B	100	86.175	ENSPPRG00000023536	UPF3B	89	86.175	Panthera_pardus
ENSSARG00000004147	UPF3B	100	81.920	ENSPTIG00000015264	UPF3B	84	95.567	Panthera_tigris_altaica
ENSSARG00000004147	UPF3B	100	84.562	ENSPTRG00000022228	UPF3B	84	95.074	Pan_troglodytes
ENSSARG00000004147	UPF3B	100	84.562	ENSPANG00000000900	UPF3B	84	95.074	Papio_anubis
ENSSARG00000004147	UPF3B	100	57.596	ENSPKIG00000019226	upf3b	91	57.273	Paramormyrops_kingsleyae
ENSSARG00000004147	UPF3B	93	54.436	ENSPSIG00000007468	UPF3A	93	50.000	Pelodiscus_sinensis
ENSSARG00000004147	UPF3B	62	68.841	ENSPSIG00000005833	UPF3B	90	67.669	Pelodiscus_sinensis
ENSSARG00000004147	UPF3B	50	73.636	ENSPMGG00000016067	upf3b	57	75.000	Periophthalmus_magnuspinnatus
ENSSARG00000004147	UPF3B	100	82.759	ENSPEMG00000012352	Upf3b	89	81.922	Peromyscus_maniculatus_bairdii
ENSSARG00000004147	UPF3B	97	65.967	ENSPCIG00000028914	UPF3B	88	62.385	Phascolarctos_cinereus
ENSSARG00000004147	UPF3B	56	70.000	ENSPLAG00000011960	upf3a	83	50.118	Poecilia_latipinna
ENSSARG00000004147	UPF3B	97	56.368	ENSPLAG00000019922	upf3b	86	56.716	Poecilia_latipinna
ENSSARG00000004147	UPF3B	97	56.368	ENSPLAG00000005105	upf3b	86	56.716	Poecilia_latipinna
ENSSARG00000004147	UPF3B	97	56.132	ENSPMEG00000023532	upf3b	86	56.468	Poecilia_mexicana
ENSSARG00000004147	UPF3B	65	93.913	ENSPPYG00000020675	-	84	93.913	Pongo_abelii
ENSSARG00000004147	UPF3B	100	84.101	ENSPCAG00000009464	UPF3B	89	84.101	Procavia_capensis
ENSSARG00000004147	UPF3B	100	85.517	ENSPCOG00000021960	UPF3B	81	94.581	Propithecus_coquereli
ENSSARG00000004147	UPF3B	100	70.737	ENSPVAG00000014075	UPF3B	89	70.737	Pteropus_vampyrus
ENSSARG00000004147	UPF3B	93	58.780	ENSPNYG00000009846	upf3b	86	56.158	Pundamilia_nyererei
ENSSARG00000004147	UPF3B	98	57.859	ENSPNAG00000021528	upf3b	91	56.264	Pygocentrus_nattereri
ENSSARG00000004147	UPF3B	100	80.645	ENSRNOG00000039994	Upf3b	89	80.505	Rattus_norvegicus
ENSSARG00000004147	UPF3B	92	81.750	ENSRBIG00000037219	UPF3B	100	82.250	Rhinopithecus_bieti
ENSSARG00000004147	UPF3B	100	84.562	ENSRROG00000041031	UPF3B	84	95.074	Rhinopithecus_roxellana
ENSSARG00000004147	UPF3B	100	85.714	ENSSBOG00000019740	UPF3B	84	95.074	Saimiri_boliviensis_boliviensis
ENSSARG00000004147	UPF3B	97	52.045	ENSSHAG00000009895	UPF3A	97	48.046	Sarcophilus_harrisii
ENSSARG00000004147	UPF3B	97	67.981	ENSSHAG00000008634	UPF3B	87	66.434	Sarcophilus_harrisii
ENSSARG00000004147	UPF3B	100	55.606	ENSSFOG00015005614	upf3b	93	59.404	Scleropages_formosus
ENSSARG00000004147	UPF3B	92	56.098	ENSSMAG00000012913	upf3b	85	54.523	Scophthalmus_maximus
ENSSARG00000004147	UPF3B	94	44.686	ENSSDUG00000009680	upf3a	52	78.824	Seriola_dumerili
ENSSARG00000004147	UPF3B	55	70.000	ENSSDUG00000005682	upf3b	86	52.555	Seriola_dumerili
ENSSARG00000004147	UPF3B	93	55.231	ENSSLDG00000003130	upf3b	86	52.812	Seriola_lalandi_dorsalis
ENSSARG00000004147	UPF3B	99	62.247	ENSSPUG00000013082	UPF3B	88	59.819	Sphenodon_punctatus
ENSSARG00000004147	UPF3B	93	54.348	ENSSPAG00000009989	upf3b	86	56.867	Stegastes_partitus
ENSSARG00000004147	UPF3B	100	83.871	ENSSSCG00000012617	UPF3B	89	82.258	Sus_scrofa
ENSSARG00000004147	UPF3B	99	63.616	ENSTGUG00000003413	UPF3B	99	65.446	Taeniopygia_guttata
ENSSARG00000004147	UPF3B	92	54.237	ENSTGUG00000009493	UPF3A	97	50.245	Taeniopygia_guttata
ENSSARG00000004147	UPF3B	97	55.269	ENSTRUG00000010645	upf3b	90	54.118	Takifugu_rubripes
ENSSARG00000004147	UPF3B	97	52.214	ENSTNIG00000015763	upf3b	89	44.836	Tetraodon_nigroviridis
ENSSARG00000004147	UPF3B	100	70.737	ENSTBEG00000003229	UPF3B	89	70.737	Tupaia_belangeri
ENSSARG00000004147	UPF3B	100	77.880	ENSUAMG00000024565	UPF3B	79	88.525	Ursus_americanus
ENSSARG00000004147	UPF3B	100	76.728	ENSUMAG00000002150	UPF3B	90	77.241	Ursus_maritimus
ENSSARG00000004147	UPF3B	95	86.441	ENSVPAG00000009971	UPF3B	100	86.441	Vicugna_pacos
ENSSARG00000004147	UPF3B	100	81.019	ENSVVUG00000011594	UPF3B	79	92.308	Vulpes_vulpes
ENSSARG00000004147	UPF3B	92	44.526	ENSXETG00000002572	upf3a	88	42.574	Xenopus_tropicalis
ENSSARG00000004147	UPF3B	97	53.009	ENSXETG00000007440	upf3b	68	81.410	Xenopus_tropicalis
ENSSARG00000004147	UPF3B	93	53.695	ENSXCOG00000016586	upf3b	78	75.000	Xiphophorus_couchianus
ENSSARG00000004147	UPF3B	93	57.320	ENSXMAG00000013680	upf3b	86	55.473	Xiphophorus_maculatus