EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSARG00000004211 (Gene tree)
Gene ID: -
Gene Symbol: LSM10
Alias: MGC15749
Full Name: LSM10%2C U7 small nuclear RNA associated
Gene Type: protein_coding
Species: Sorex_araneus
Status: putative
Strand: Plus strand
Length: 378 bases
Position: chrscaffold_208719:5352-5729
Accession: 101555305
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSARP00000003790	LSM	PF01423.22	2.5e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSART00000004175	LSM10-201	378	XM_004614324	ENSSARP00000003790	125 (aa)	XP_004614381	UPI000158025D

Gene Model

Click here to download ENSSARG00000004211's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSARG00000004211's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSARG00000004211	LSM10	54	32.836	ENSSARG00000004271	SNRPD1	100	32.836

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSARG00000004211	LSM10	100	90.400	ENSG00000181817	LSM10	100	88.800	Homo_sapiens
ENSSARG00000004211	LSM10	100	92.000	ENSAMEG00000019854	LSM10	100	90.400	Ailuropoda_melanoleuca
ENSSARG00000004211	LSM10	94	66.949	ENSACIG00000015420	oscp1a	68	68.932	Amphilophus_citrinellus
ENSSARG00000004211	LSM10	96	67.500	ENSAOCG00000015618	LSM10	98	67.500	Amphiprion_ocellaris
ENSSARG00000004211	LSM10	89	66.667	ENSAOCG00000015607	LSM10	79	71.569	Amphiprion_ocellaris
ENSSARG00000004211	LSM10	96	67.500	ENSAOCG00000014654	-	98	67.500	Amphiprion_ocellaris
ENSSARG00000004211	LSM10	89	66.667	ENSAPEG00000021851	LSM10	79	71.569	Amphiprion_percula
ENSSARG00000004211	LSM10	96	67.500	ENSAPEG00000021845	-	98	67.500	Amphiprion_percula
ENSSARG00000004211	LSM10	94	61.864	ENSATEG00000006310	oscp1a	78	64.762	Anabas_testudineus
ENSSARG00000004211	LSM10	100	68.000	ENSACAG00000001231	LSM10	87	71.028	Anolis_carolinensis
ENSSARG00000004211	LSM10	98	89.344	ENSANAG00000031489	-	98	87.705	Aotus_nancymaae
ENSSARG00000004211	LSM10	100	89.600	ENSANAG00000018759	-	100	88.000	Aotus_nancymaae
ENSSARG00000004211	LSM10	96	65.833	ENSACLG00000004728	oscp1a	85	68.571	Astatotilapia_calliptera
ENSSARG00000004211	LSM10	96	68.333	ENSAMXG00000025301	oscp1a	88	70.476	Astyanax_mexicanus
ENSSARG00000004211	LSM10	98	90.164	ENSBTAG00000024096	LSM10	98	88.525	Bos_taurus
ENSSARG00000004211	LSM10	100	88.800	ENSCJAG00000044880	LSM10	100	87.200	Callithrix_jacchus
ENSSARG00000004211	LSM10	100	94.400	ENSCAFG00000003382	LSM10	100	92.800	Canis_familiaris
ENSSARG00000004211	LSM10	100	94.400	ENSCAFG00020008920	LSM10	100	92.800	Canis_lupus_dingo
ENSSARG00000004211	LSM10	98	90.164	ENSCHIG00000009398	LSM10	98	88.525	Capra_hircus
ENSSARG00000004211	LSM10	100	92.000	ENSCAPG00000012567	LSM10	100	90.400	Cavia_aperea
ENSSARG00000004211	LSM10	100	92.000	ENSCPOG00000039302	LSM10	100	90.400	Cavia_porcellus
ENSSARG00000004211	LSM10	98	90.164	ENSCCAG00000008378	-	98	87.705	Cebus_capucinus
ENSSARG00000004211	LSM10	100	89.600	ENSCCAG00000018913	-	100	88.000	Cebus_capucinus
ENSSARG00000004211	LSM10	100	90.400	ENSCATG00000006589	LSM10	100	88.800	Cercocebus_atys
ENSSARG00000004211	LSM10	100	94.400	ENSCLAG00000008633	LSM10	100	92.800	Chinchilla_lanigera
ENSSARG00000004211	LSM10	100	90.400	ENSCSAG00000000134	LSM10	100	88.800	Chlorocebus_sabaeus
ENSSARG00000004211	LSM10	100	92.000	ENSCHOG00000008615	LSM10	100	92.000	Choloepus_hoffmanni
ENSSARG00000004211	LSM10	82	31.373	ENSCSAVG00000001896	-	87	31.373	Ciona_savignyi
ENSSARG00000004211	LSM10	100	90.400	ENSCANG00000019928	LSM10	100	88.800	Colobus_angolensis_palliatus
ENSSARG00000004211	LSM10	94	82.353	ENSCGRG00001022673	-	94	80.672	Cricetulus_griseus_chok1gshd
ENSSARG00000004211	LSM10	98	91.870	ENSCGRG00001004317	-	99	90.244	Cricetulus_griseus_chok1gshd
ENSSARG00000004211	LSM10	94	82.353	ENSCGRG00000015514	-	94	80.672	Cricetulus_griseus_crigri
ENSSARG00000004211	LSM10	98	91.870	ENSCGRG00000014935	-	99	90.244	Cricetulus_griseus_crigri
ENSSARG00000004211	LSM10	96	62.500	ENSCSEG00000010374	oscp1a	70	65.714	Cynoglossus_semilaevis
ENSSARG00000004211	LSM10	97	64.463	ENSCVAG00000001536	oscp1a	82	68.868	Cyprinodon_variegatus
ENSSARG00000004211	LSM10	68	71.765	ENSDARG00000109563	CABZ01074453.1	99	71.765	Danio_rerio
ENSSARG00000004211	LSM10	98	70.732	ENSDARG00000101222	oscp1a	89	74.766	Danio_rerio
ENSSARG00000004211	LSM10	99	94.355	ENSDNOG00000036662	LSM10	99	92.742	Dasypus_novemcinctus
ENSSARG00000004211	LSM10	100	92.800	ENSDORG00000007579	Lsm10	100	91.200	Dipodomys_ordii
ENSSARG00000004211	LSM10	84	30.275	FBgn0033554	Lsm10	57	33.333	Drosophila_melanogaster
ENSSARG00000004211	LSM10	100	90.400	ENSETEG00000005703	LSM10	100	89.600	Echinops_telfairi
ENSSARG00000004211	LSM10	84	55.238	ENSEBUG00000001312	oscp1a	86	55.238	Eptatretus_burgeri
ENSSARG00000004211	LSM10	100	94.400	ENSEASG00005012194	LSM10	100	92.800	Equus_asinus_asinus
ENSSARG00000004211	LSM10	100	95.200	ENSECAG00000005071	LSM10	100	95.200	Equus_caballus
ENSSARG00000004211	LSM10	100	92.800	ENSEEUG00000012032	LSM10	100	92.000	Erinaceus_europaeus
ENSSARG00000004211	LSM10	98	67.480	ENSELUG00000007452	oscp1a	88	72.897	Esox_lucius
ENSSARG00000004211	LSM10	100	70.400	ENSFALG00000000851	LSM10	87	73.832	Ficedula_albicollis
ENSSARG00000004211	LSM10	100	90.400	ENSFDAG00000021056	LSM10	100	88.800	Fukomys_damarensis
ENSSARG00000004211	LSM10	89	67.568	ENSFHEG00000001058	oscp1a	84	69.388	Fundulus_heteroclitus
ENSSARG00000004211	LSM10	85	67.925	ENSGMOG00000019832	oscp1a	88	67.619	Gadus_morhua
ENSSARG00000004211	LSM10	100	73.600	ENSGALG00000002127	LSM10	100	72.800	Gallus_gallus
ENSSARG00000004211	LSM10	91	60.684	ENSGAFG00000016445	oscp1a	85	60.000	Gambusia_affinis
ENSSARG00000004211	LSM10	96	63.333	ENSGACG00000002329	oscp1a	86	67.619	Gasterosteus_aculeatus
ENSSARG00000004211	LSM10	100	74.400	ENSGAGG00000024848	LSM10	100	73.600	Gopherus_agassizii
ENSSARG00000004211	LSM10	100	89.600	ENSGGOG00000003556	LSM10	100	88.000	Gorilla_gorilla
ENSSARG00000004211	LSM10	96	65.833	ENSHBUG00000001722	oscp1a	85	68.571	Haplochromis_burtoni
ENSSARG00000004211	LSM10	100	92.000	ENSHGLG00000011625	LSM10	100	90.400	Heterocephalus_glaber_female
ENSSARG00000004211	LSM10	100	92.000	ENSHGLG00100001769	LSM10	100	90.400	Heterocephalus_glaber_male
ENSSARG00000004211	LSM10	84	69.524	ENSIPUG00000005808	oscp1a	90	69.231	Ictalurus_punctatus
ENSSARG00000004211	LSM10	100	92.800	ENSSTOG00000000606	LSM10	100	91.200	Ictidomys_tridecemlineatus
ENSSARG00000004211	LSM10	96	63.333	ENSKMAG00000012143	oscp1a	87	66.667	Kryptolebias_marmoratus
ENSSARG00000004211	LSM10	98	63.934	ENSLBEG00000017764	oscp1a	98	63.934	Labrus_bergylta
ENSSARG00000004211	LSM10	100	74.400	ENSLACG00000015904	LSM10	95	73.600	Latimeria_chalumnae
ENSSARG00000004211	LSM10	98	69.919	ENSLOCG00000018277	oscp1a	88	73.832	Lepisosteus_oculatus
ENSSARG00000004211	LSM10	100	91.200	ENSLAFG00000009600	LSM10	100	90.400	Loxodonta_africana
ENSSARG00000004211	LSM10	100	90.400	ENSMFAG00000009115	LSM10	100	88.800	Macaca_fascicularis
ENSSARG00000004211	LSM10	100	90.400	ENSMMUG00000017338	LSM10	100	88.800	Macaca_mulatta
ENSSARG00000004211	LSM10	100	90.400	ENSMNEG00000020023	LSM10	100	88.800	Macaca_nemestrina
ENSSARG00000004211	LSM10	100	90.400	ENSMLEG00000025150	LSM10	100	88.800	Mandrillus_leucophaeus
ENSSARG00000004211	LSM10	98	64.754	ENSMAMG00000004427	oscp1a	88	68.224	Mastacembelus_armatus
ENSSARG00000004211	LSM10	96	65.833	ENSMZEG00005026307	oscp1a	85	68.571	Maylandia_zebra
ENSSARG00000004211	LSM10	100	72.800	ENSMGAG00000015707	LSM10	100	72.000	Meleagris_gallopavo
ENSSARG00000004211	LSM10	98	89.431	ENSMAUG00000016624	Lsm10	99	87.805	Mesocricetus_auratus
ENSSARG00000004211	LSM10	98	90.244	ENSMOCG00000021943	Lsm10	99	88.618	Microtus_ochrogaster
ENSSARG00000004211	LSM10	90	66.071	ENSMMOG00000013597	oscp1a	76	69.608	Mola_mola
ENSSARG00000004211	LSM10	100	83.200	ENSMODG00000023328	LSM10	100	82.400	Monodelphis_domestica
ENSSARG00000004211	LSM10	57	59.211	ENSMALG00000012661	oscp1a	60	59.211	Monopterus_albus
ENSSARG00000004211	LSM10	98	90.244	MGP_CAROLIEiJ_G0026467	Lsm10	100	93.548	Mus_caroli
ENSSARG00000004211	LSM10	98	91.057	ENSMUSG00000050188	Lsm10	100	94.624	Mus_musculus
ENSSARG00000004211	LSM10	98	91.057	MGP_PahariEiJ_G0028798	Lsm10	100	94.624	Mus_pahari
ENSSARG00000004211	LSM10	98	91.057	MGP_SPRETEiJ_G0027446	Lsm10	100	94.624	Mus_spretus
ENSSARG00000004211	LSM10	100	94.400	ENSMPUG00000018593	LSM10	100	92.800	Mustela_putorius_furo
ENSSARG00000004211	LSM10	100	88.000	ENSMLUG00000023895	LSM10	100	87.200	Myotis_lucifugus
ENSSARG00000004211	LSM10	100	91.200	ENSNGAG00000015011	Lsm10	100	89.600	Nannospalax_galili
ENSSARG00000004211	LSM10	96	66.667	ENSNBRG00000014306	oscp1a	85	69.524	Neolamprologus_brichardi
ENSSARG00000004211	LSM10	100	91.200	ENSNLEG00000033754	LSM10	100	89.600	Nomascus_leucogenys
ENSSARG00000004211	LSM10	100	84.000	ENSMEUG00000006313	LSM10	100	83.200	Notamacropus_eugenii
ENSSARG00000004211	LSM10	100	89.600	ENSOPRG00000001699	LSM10	100	88.800	Ochotona_princeps
ENSSARG00000004211	LSM10	100	94.400	ENSODEG00000019161	LSM10	100	92.800	Octodon_degus
ENSSARG00000004211	LSM10	96	66.667	ENSONIG00000020904	oscp1a	86	69.524	Oreochromis_niloticus
ENSSARG00000004211	LSM10	100	77.600	ENSOANG00000002066	LSM10	100	76.800	Ornithorhynchus_anatinus
ENSSARG00000004211	LSM10	100	88.800	ENSOCUG00000005333	LSM10	100	88.000	Oryctolagus_cuniculus
ENSSARG00000004211	LSM10	97	65.289	ENSORLG00000009504	oscp1a	87	68.571	Oryzias_latipes
ENSSARG00000004211	LSM10	97	65.289	ENSORLG00020016201	oscp1a	87	68.571	Oryzias_latipes_hni
ENSSARG00000004211	LSM10	97	65.289	ENSORLG00015007794	oscp1a	88	69.524	Oryzias_latipes_hsok
ENSSARG00000004211	LSM10	100	93.600	ENSOGAG00000002653	LSM10	100	92.000	Otolemur_garnettii
ENSSARG00000004211	LSM10	98	90.164	ENSOARG00000009596	LSM10	98	88.525	Ovis_aries
ENSSARG00000004211	LSM10	100	90.400	ENSPPAG00000023465	LSM10	100	88.800	Pan_paniscus
ENSSARG00000004211	LSM10	100	95.200	ENSPPRG00000014619	LSM10	100	95.200	Panthera_pardus
ENSSARG00000004211	LSM10	100	95.200	ENSPTIG00000004613	LSM10	100	95.200	Panthera_tigris_altaica
ENSSARG00000004211	LSM10	100	90.400	ENSPTRG00000000539	LSM10	100	88.800	Pan_troglodytes
ENSSARG00000004211	LSM10	100	90.400	ENSPANG00000023172	LSM10	100	88.800	Papio_anubis
ENSSARG00000004211	LSM10	98	64.754	ENSPKIG00000003728	oscp1a	86	69.159	Paramormyrops_kingsleyae
ENSSARG00000004211	LSM10	100	74.400	ENSPSIG00000000590	LSM10	100	73.600	Pelodiscus_sinensis
ENSSARG00000004211	LSM10	61	65.789	ENSPMGG00000015718	oscp1a	99	65.789	Periophthalmus_magnuspinnatus
ENSSARG00000004211	LSM10	82	85.437	ENSPCIG00000014865	LSM10	76	85.437	Phascolarctos_cinereus
ENSSARG00000004211	LSM10	91	66.667	ENSPFOG00000020490	oscp1a	86	68.627	Poecilia_formosa
ENSSARG00000004211	LSM10	91	66.667	ENSPLAG00000016537	oscp1a	80	66.667	Poecilia_latipinna
ENSSARG00000004211	LSM10	88	67.273	ENSPMEG00000000174	oscp1a	85	69.388	Poecilia_mexicana
ENSSARG00000004211	LSM10	91	65.789	ENSPREG00000009899	oscp1a	80	65.714	Poecilia_reticulata
ENSSARG00000004211	LSM10	100	90.400	ENSPPYG00000001539	LSM10	100	88.800	Pongo_abelii
ENSSARG00000004211	LSM10	96	90.000	ENSPCAG00000002520	LSM10	89	94.393	Procavia_capensis
ENSSARG00000004211	LSM10	100	92.800	ENSPVAG00000008644	LSM10	100	91.200	Pteropus_vampyrus
ENSSARG00000004211	LSM10	96	65.833	ENSPNYG00000003138	oscp1a	85	68.571	Pundamilia_nyererei
ENSSARG00000004211	LSM10	95	66.387	ENSPNAG00000028829	oscp1a	86	69.903	Pygocentrus_nattereri
ENSSARG00000004211	LSM10	98	91.870	ENSRNOG00000025716	Lsm10	99	90.244	Rattus_norvegicus
ENSSARG00000004211	LSM10	100	90.400	ENSRBIG00000001561	LSM10	100	88.800	Rhinopithecus_bieti
ENSSARG00000004211	LSM10	100	90.400	ENSRROG00000011414	LSM10	100	88.800	Rhinopithecus_roxellana
ENSSARG00000004211	LSM10	100	89.600	ENSSBOG00000036413	-	100	88.000	Saimiri_boliviensis_boliviensis
ENSSARG00000004211	LSM10	100	83.200	ENSSHAG00000018056	LSM10	100	82.400	Sarcophilus_harrisii
ENSSARG00000004211	LSM10	98	65.854	ENSSFOG00015019954	lsm10	99	65.854	Scleropages_formosus
ENSSARG00000004211	LSM10	94	65.812	ENSSMAG00000001297	oscp1a	87	68.627	Scophthalmus_maximus
ENSSARG00000004211	LSM10	98	63.415	ENSSDUG00000007090	oscp1a	88	66.667	Seriola_dumerili
ENSSARG00000004211	LSM10	94	64.407	ENSSLDG00000000800	oscp1a	85	67.961	Seriola_lalandi_dorsalis
ENSSARG00000004211	LSM10	94	65.254	ENSSPAG00000009229	oscp1a	85	69.903	Stegastes_partitus
ENSSARG00000004211	LSM10	100	90.400	ENSSSCG00000038916	LSM10	100	89.600	Sus_scrofa
ENSSARG00000004211	LSM10	99	70.968	ENSTGUG00000001600	-	100	70.161	Taeniopygia_guttata
ENSSARG00000004211	LSM10	99	70.968	ENSTGUG00000001602	-	100	70.161	Taeniopygia_guttata
ENSSARG00000004211	LSM10	97	66.116	ENSTRUG00000010531	oscp1a	96	66.116	Takifugu_rubripes
ENSSARG00000004211	LSM10	100	90.400	ENSTBEG00000016674	LSM10	100	88.800	Tupaia_belangeri
ENSSARG00000004211	LSM10	100	92.800	ENSUAMG00000020265	LSM10	100	91.200	Ursus_americanus
ENSSARG00000004211	LSM10	100	92.800	ENSUMAG00000001438	LSM10	57	91.200	Ursus_maritimus
ENSSARG00000004211	LSM10	100	94.400	ENSVVUG00000023209	LSM10	100	92.800	Vulpes_vulpes
ENSSARG00000004211	LSM10	100	70.400	ENSXETG00000027631	lsm10	88	74.766	Xenopus_tropicalis
ENSSARG00000004211	LSM10	94	64.103	ENSXCOG00000018776	oscp1a	66	63.810	Xiphophorus_couchianus
ENSSARG00000004211	LSM10	88	65.455	ENSXMAG00000019963	oscp1a	78	66.327	Xiphophorus_maculatus