EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSARG00000004877 (Gene tree)
Gene ID: -
Gene Symbol: SND1
Alias: TDRD11|p100
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Sorex_araneus
Status: putative
Strand: Plus strand
Length: 321418 bases
Position: chrGeneScaffold_1514:102601-424018
Accession: 30646
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSARP00000004453	SNase	PF00565.17	5.6e-53	1	3
ENSSARP00000004453	SNase	PF00565.17	5.6e-53	2	3
ENSSARP00000004453	SNase	PF00565.17	5.6e-53	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSART00000004907	SND1-201	2544	-	ENSSARP00000004453	848 (aa)	-	UPI0001582856

Gene Model

Click here to download ENSSARG00000004877's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSARG00000004877's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSARG00000004877	SND1	92	96.226	ENSG00000197157	SND1	86	96.226	Homo_sapiens
ENSSARG00000004877	SND1	92	79.971	ENSAPOG00000017599	snd1	86	79.971	Acanthochromis_polyacanthus
ENSSARG00000004877	SND1	92	99.057	ENSAMEG00000004664	SND1	81	99.057	Ailuropoda_melanoleuca
ENSSARG00000004877	SND1	92	77.358	ENSACIG00000003551	snd1	86	77.358	Amphilophus_citrinellus
ENSSARG00000004877	SND1	92	79.823	ENSAOCG00000014166	snd1	86	79.823	Amphiprion_ocellaris
ENSSARG00000004877	SND1	92	79.823	ENSAPEG00000007067	snd1	86	79.823	Amphiprion_percula
ENSSARG00000004877	SND1	92	80.118	ENSATEG00000018475	snd1	78	80.118	Anabas_testudineus
ENSSARG00000004877	SND1	92	99.057	ENSANAG00000034463	SND1	88	99.057	Aotus_nancymaae
ENSSARG00000004877	SND1	92	79.381	ENSACLG00000022897	snd1	86	79.381	Astatotilapia_calliptera
ENSSARG00000004877	SND1	92	81.132	ENSAMXG00000016318	snd1	88	81.132	Astyanax_mexicanus
ENSSARG00000004877	SND1	92	99.057	ENSBTAG00000010692	SND1	86	99.057	Bos_taurus
ENSSARG00000004877	SND1	80	47.338	WBGene00006626	tsn-1	75	47.338	Caenorhabditis_elegans
ENSSARG00000004877	SND1	92	99.057	ENSCJAG00000017668	SND1	88	99.057	Callithrix_jacchus
ENSSARG00000004877	SND1	92	99.057	ENSCAFG00000001700	SND1	86	99.057	Canis_familiaris
ENSSARG00000004877	SND1	92	99.057	ENSCAFG00020021639	SND1	86	99.057	Canis_lupus_dingo
ENSSARG00000004877	SND1	92	99.057	ENSCHIG00000023390	SND1	87	99.057	Capra_hircus
ENSSARG00000004877	SND1	78	91.373	ENSTSYG00000004979	SND1	96	91.373	Carlito_syrichta
ENSSARG00000004877	SND1	90	95.283	ENSCAPG00000010677	SND1	91	95.283	Cavia_aperea
ENSSARG00000004877	SND1	92	95.283	ENSCPOG00000006251	SND1	86	95.283	Cavia_porcellus
ENSSARG00000004877	SND1	92	99.057	ENSCCAG00000036847	SND1	88	99.057	Cebus_capucinus
ENSSARG00000004877	SND1	92	96.226	ENSCATG00000035214	SND1	88	96.226	Cercocebus_atys
ENSSARG00000004877	SND1	92	98.113	ENSCLAG00000011796	SND1	93	91.549	Chinchilla_lanigera
ENSSARG00000004877	SND1	92	96.226	ENSCSAG00000010182	SND1	86	96.226	Chlorocebus_sabaeus
ENSSARG00000004877	SND1	76	84.211	ENSCHOG00000002218	SND1	78	84.211	Choloepus_hoffmanni
ENSSARG00000004877	SND1	92	89.623	ENSCPBG00000018094	SND1	86	89.623	Chrysemys_picta_bellii
ENSSARG00000004877	SND1	92	55.912	ENSCING00000000524	-	86	55.912	Ciona_intestinalis
ENSSARG00000004877	SND1	92	57.670	ENSCSAVG00000008807	-	85	57.670	Ciona_savignyi
ENSSARG00000004877	SND1	92	96.226	ENSCANG00000035119	SND1	86	96.226	Colobus_angolensis_palliatus
ENSSARG00000004877	SND1	92	98.113	ENSCGRG00001022514	Snd1	88	98.113	Cricetulus_griseus_chok1gshd
ENSSARG00000004877	SND1	92	98.113	ENSCGRG00000012277	Snd1	88	98.113	Cricetulus_griseus_crigri
ENSSARG00000004877	SND1	92	80.265	ENSCSEG00000008661	snd1	89	80.265	Cynoglossus_semilaevis
ENSSARG00000004877	SND1	92	80.854	ENSCVAG00000010316	snd1	88	80.392	Cyprinodon_variegatus
ENSSARG00000004877	SND1	92	80.441	ENSDARG00000006766	snd1	95	80.515	Danio_rerio
ENSSARG00000004877	SND1	92	98.113	ENSDNOG00000006795	SND1	89	98.113	Dasypus_novemcinctus
ENSSARG00000004877	SND1	92	98.113	ENSDORG00000000336	Snd1	86	98.113	Dipodomys_ordii
ENSSARG00000004877	SND1	92	49.290	FBgn0035121	Tudor-SN	86	49.290	Drosophila_melanogaster
ENSSARG00000004877	SND1	84	92.105	ENSETEG00000000375	SND1	81	92.105	Echinops_telfairi
ENSSARG00000004877	SND1	69	65.676	ENSEBUG00000014201	-	84	76.503	Eptatretus_burgeri
ENSSARG00000004877	SND1	92	99.057	ENSEASG00005008513	SND1	86	99.057	Equus_asinus_asinus
ENSSARG00000004877	SND1	92	99.057	ENSECAG00000011451	SND1	87	99.057	Equus_caballus
ENSSARG00000004877	SND1	92	95.283	ENSEEUG00000014737	SND1	86	95.283	Erinaceus_europaeus
ENSSARG00000004877	SND1	92	78.414	ENSELUG00000001805	snd1	83	78.414	Esox_lucius
ENSSARG00000004877	SND1	92	99.057	ENSFCAG00000008289	SND1	87	99.057	Felis_catus
ENSSARG00000004877	SND1	92	96.226	ENSFDAG00000015881	SND1	86	96.226	Fukomys_damarensis
ENSSARG00000004877	SND1	92	80.854	ENSFHEG00000004093	snd1	89	80.854	Fundulus_heteroclitus
ENSSARG00000004877	SND1	54	70.755	ENSGMOG00000018932	snd1	51	70.755	Gadus_morhua
ENSSARG00000004877	SND1	92	80.854	ENSGAFG00000008421	snd1	88	80.854	Gambusia_affinis
ENSSARG00000004877	SND1	84	73.585	ENSGACG00000019793	snd1	78	73.585	Gasterosteus_aculeatus
ENSSARG00000004877	SND1	92	97.170	ENSGGOG00000009614	SND1	88	97.170	Gorilla_gorilla
ENSSARG00000004877	SND1	92	79.381	ENSHBUG00000019135	snd1	86	79.381	Haplochromis_burtoni
ENSSARG00000004877	SND1	92	97.170	ENSHGLG00000003618	SND1	93	91.725	Heterocephalus_glaber_female
ENSSARG00000004877	SND1	92	97.170	ENSHGLG00100012449	SND1	87	97.170	Heterocephalus_glaber_male
ENSSARG00000004877	SND1	92	79.971	ENSHCOG00000005266	snd1	86	79.971	Hippocampus_comes
ENSSARG00000004877	SND1	92	79.148	ENSIPUG00000013279	snd1	86	79.148	Ictalurus_punctatus
ENSSARG00000004877	SND1	92	98.113	ENSSTOG00000002140	SND1	86	98.113	Ictidomys_tridecemlineatus
ENSSARG00000004877	SND1	92	99.057	ENSJJAG00000009561	Snd1	86	99.057	Jaculus_jaculus
ENSSARG00000004877	SND1	92	80.412	ENSKMAG00000016997	snd1	86	80.412	Kryptolebias_marmoratus
ENSSARG00000004877	SND1	92	79.304	ENSLBEG00000013563	snd1	88	78.792	Labrus_bergylta
ENSSARG00000004877	SND1	92	80.058	ENSLOCG00000015537	snd1	86	80.058	Lepisosteus_oculatus
ENSSARG00000004877	SND1	92	97.170	ENSLAFG00000009696	SND1	86	97.170	Loxodonta_africana
ENSSARG00000004877	SND1	92	96.226	ENSMFAG00000038114	SND1	88	96.226	Macaca_fascicularis
ENSSARG00000004877	SND1	92	96.226	ENSMMUG00000015432	SND1	93	91.858	Macaca_mulatta
ENSSARG00000004877	SND1	92	96.226	ENSMNEG00000039808	SND1	97	91.858	Macaca_nemestrina
ENSSARG00000004877	SND1	92	96.226	ENSMLEG00000029040	SND1	97	91.858	Mandrillus_leucophaeus
ENSSARG00000004877	SND1	92	80.265	ENSMAMG00000011739	snd1	86	80.265	Mastacembelus_armatus
ENSSARG00000004877	SND1	92	79.381	ENSMZEG00005005681	snd1	88	79.381	Maylandia_zebra
ENSSARG00000004877	SND1	92	97.170	ENSMICG00000000097	SND1	87	97.170	Microcebus_murinus
ENSSARG00000004877	SND1	92	98.113	ENSMOCG00000005040	Snd1	86	98.113	Microtus_ochrogaster
ENSSARG00000004877	SND1	92	80.118	ENSMMOG00000001795	snd1	86	80.118	Mola_mola
ENSSARG00000004877	SND1	92	97.170	ENSMODG00000015182	SND1	86	97.170	Monodelphis_domestica
ENSSARG00000004877	SND1	92	79.087	ENSMALG00000012071	snd1	87	79.087	Monopterus_albus
ENSSARG00000004877	SND1	92	98.113	MGP_CAROLIEiJ_G0028159	Snd1	95	91.005	Mus_caroli
ENSSARG00000004877	SND1	92	98.113	ENSMUSG00000001424	Snd1	95	89.138	Mus_musculus
ENSSARG00000004877	SND1	92	98.113	MGP_PahariEiJ_G0021917	Snd1	96	91.005	Mus_pahari
ENSSARG00000004877	SND1	92	98.113	MGP_SPRETEiJ_G0029159	Snd1	95	89.483	Mus_spretus
ENSSARG00000004877	SND1	92	99.057	ENSMPUG00000006545	SND1	86	99.057	Mustela_putorius_furo
ENSSARG00000004877	SND1	92	98.113	ENSMLUG00000017130	SND1	89	98.113	Myotis_lucifugus
ENSSARG00000004877	SND1	92	98.113	ENSNGAG00000011186	Snd1	86	98.113	Nannospalax_galili
ENSSARG00000004877	SND1	92	79.529	ENSNBRG00000006681	snd1	86	79.529	Neolamprologus_brichardi
ENSSARG00000004877	SND1	92	97.170	ENSNLEG00000012263	SND1	95	91.887	Nomascus_leucogenys
ENSSARG00000004877	SND1	84	92.105	ENSOPRG00000013405	SND1	78	92.105	Ochotona_princeps
ENSSARG00000004877	SND1	92	98.113	ENSODEG00000011502	SND1	86	98.113	Octodon_degus
ENSSARG00000004877	SND1	92	79.381	ENSONIG00000011481	snd1	84	79.381	Oreochromis_niloticus
ENSSARG00000004877	SND1	92	96.226	ENSOANG00000000817	SND1	86	96.226	Ornithorhynchus_anatinus
ENSSARG00000004877	SND1	92	96.226	ENSOCUG00000001620	SND1	86	96.226	Oryctolagus_cuniculus
ENSSARG00000004877	SND1	92	80.118	ENSORLG00000015201	snd1	88	80.118	Oryzias_latipes
ENSSARG00000004877	SND1	92	80.118	ENSORLG00020013991	snd1	88	80.118	Oryzias_latipes_hni
ENSSARG00000004877	SND1	92	80.118	ENSORLG00015012436	snd1	86	80.118	Oryzias_latipes_hsok
ENSSARG00000004877	SND1	92	79.234	ENSOMEG00000006406	snd1	86	79.234	Oryzias_melastigma
ENSSARG00000004877	SND1	92	97.170	ENSOGAG00000013356	SND1	81	97.170	Otolemur_garnettii
ENSSARG00000004877	SND1	92	99.057	ENSOARG00000002149	SND1	88	99.057	Ovis_aries
ENSSARG00000004877	SND1	92	96.226	ENSPPAG00000042947	SND1	88	96.226	Pan_paniscus
ENSSARG00000004877	SND1	92	99.057	ENSPPRG00000004494	SND1	86	99.057	Panthera_pardus
ENSSARG00000004877	SND1	92	99.057	ENSPTIG00000014214	SND1	87	99.057	Panthera_tigris_altaica
ENSSARG00000004877	SND1	92	96.226	ENSPTRG00000023911	SND1	88	96.226	Pan_troglodytes
ENSSARG00000004877	SND1	92	96.226	ENSPANG00000011997	SND1	88	96.226	Papio_anubis
ENSSARG00000004877	SND1	92	78.134	ENSPKIG00000023494	snd1	86	78.134	Paramormyrops_kingsleyae
ENSSARG00000004877	SND1	90	79.003	ENSPMGG00000003629	snd1	92	79.003	Periophthalmus_magnuspinnatus
ENSSARG00000004877	SND1	92	98.113	ENSPEMG00000010240	Snd1	86	98.113	Peromyscus_maniculatus_bairdii
ENSSARG00000004877	SND1	92	73.421	ENSPMAG00000007915	-	89	73.421	Petromyzon_marinus
ENSSARG00000004877	SND1	92	98.113	ENSPCIG00000011561	SND1	86	98.113	Phascolarctos_cinereus
ENSSARG00000004877	SND1	92	80.412	ENSPFOG00000001557	snd1	86	80.412	Poecilia_formosa
ENSSARG00000004877	SND1	92	80.412	ENSPLAG00000018459	snd1	84	80.412	Poecilia_latipinna
ENSSARG00000004877	SND1	92	80.854	ENSPMEG00000006803	snd1	86	80.854	Poecilia_mexicana
ENSSARG00000004877	SND1	92	81.001	ENSPREG00000002189	snd1	87	81.001	Poecilia_reticulata
ENSSARG00000004877	SND1	84	97.368	ENSPPYG00000017972	SND1	85	97.368	Pongo_abelii
ENSSARG00000004877	SND1	92	97.170	ENSPCAG00000011305	SND1	86	97.170	Procavia_capensis
ENSSARG00000004877	SND1	92	97.170	ENSPCOG00000026791	SND1	88	97.170	Propithecus_coquereli
ENSSARG00000004877	SND1	92	99.057	ENSPVAG00000013945	SND1	86	99.057	Pteropus_vampyrus
ENSSARG00000004877	SND1	92	79.381	ENSPNYG00000000932	snd1	86	79.381	Pundamilia_nyererei
ENSSARG00000004877	SND1	92	79.883	ENSPNAG00000001206	snd1	86	79.883	Pygocentrus_nattereri
ENSSARG00000004877	SND1	92	97.170	ENSRNOG00000031173	Snd1	86	97.170	Rattus_norvegicus
ENSSARG00000004877	SND1	78	91.337	ENSRBIG00000027782	-	93	91.255	Rhinopithecus_bieti
ENSSARG00000004877	SND1	92	96.226	ENSRROG00000033020	SND1	86	96.226	Rhinopithecus_roxellana
ENSSARG00000004877	SND1	92	99.057	ENSSBOG00000032461	SND1	88	99.057	Saimiri_boliviensis_boliviensis
ENSSARG00000004877	SND1	92	95.283	ENSSHAG00000015359	SND1	88	95.283	Sarcophilus_harrisii
ENSSARG00000004877	SND1	92	83.962	ENSSFOG00015001103	snd1	86	83.962	Scleropages_formosus
ENSSARG00000004877	SND1	92	78.940	ENSSMAG00000001932	snd1	81	78.940	Scophthalmus_maximus
ENSSARG00000004877	SND1	92	80.118	ENSSDUG00000002699	snd1	81	80.118	Seriola_dumerili
ENSSARG00000004877	SND1	92	77.358	ENSSLDG00000001950	snd1	85	77.358	Seriola_lalandi_dorsalis
ENSSARG00000004877	SND1	78	81.043	ENSSPUG00000017586	SND1	96	81.043	Sphenodon_punctatus
ENSSARG00000004877	SND1	75	80.177	ENSSPAG00000021398	snd1	94	80.177	Stegastes_partitus
ENSSARG00000004877	SND1	92	99.057	ENSSSCG00000016590	SND1	86	99.057	Sus_scrofa
ENSSARG00000004877	SND1	92	84.314	ENSTRUG00000014067	snd1	86	79.381	Takifugu_rubripes
ENSSARG00000004877	SND1	92	79.823	ENSTNIG00000011019	snd1	94	80.385	Tetraodon_nigroviridis
ENSSARG00000004877	SND1	92	98.113	ENSTBEG00000003999	SND1	92	98.113	Tupaia_belangeri
ENSSARG00000004877	SND1	92	98.113	ENSTTRG00000006059	SND1	86	98.113	Tursiops_truncatus
ENSSARG00000004877	SND1	61	88.022	ENSUAMG00000002820	-	83	88.022	Ursus_americanus
ENSSARG00000004877	SND1	85	98.113	ENSUAMG00000005604	-	75	98.113	Ursus_americanus
ENSSARG00000004877	SND1	92	98.113	ENSUMAG00000005960	SND1	86	98.113	Ursus_maritimus
ENSSARG00000004877	SND1	76	92.105	ENSVPAG00000008302	SND1	67	92.105	Vicugna_pacos
ENSSARG00000004877	SND1	92	99.057	ENSVVUG00000007226	SND1	86	99.057	Vulpes_vulpes
ENSSARG00000004877	SND1	91	82.866	ENSXETG00000023043	snd1	90	82.866	Xenopus_tropicalis
ENSSARG00000004877	SND1	90	80.363	ENSXCOG00000013629	snd1	92	80.363	Xiphophorus_couchianus
ENSSARG00000004877	SND1	92	80.854	ENSXMAG00000011469	snd1	86	80.854	Xiphophorus_maculatus