EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSARG00000005875 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Sorex_araneus
Status: putative
Strand: Plus strand
Length: 26625 bases
Position: chrGeneScaffold_1637:154754-181378
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSARP00000005370	RNA_pol_Rpb1_5	PF04998.17	8.1e-97	1	1
ENSSARP00000005370	RNA_pol_Rpb1_4	PF05000.17	1.6e-38	1	1
ENSSARP00000005370	RNA_pol_Rpb1_2	PF00623.20	1.3e-73	1	1
ENSSARP00000005370	RNA_pol_Rpb1_3	PF04983.18	2.3e-50	1	1
ENSSARP00000005370	RNA_pol_Rpb1_1	PF04997.12	2.5e-109	1	1
ENSSARP00000005370	RNA_pol_Rpb1_7	PF04990.12	9.1e-55	1	1
ENSSARP00000005370	RNA_pol_Rpb1_6	PF04992.14	4.2e-34	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSART00000005926	-	5025	-	ENSSARP00000005370	1675 (aa)	-	UPI0001582AC3

Gene Model

Click here to download ENSSARG00000005875's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSARG00000005875's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSARG00000005875	-	52	55.063	ENSSARG00000009916	POLR3A	77	55.063

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSARG00000005875	-	96	90.892	ENSAPOG00000006552	polr2a	91	90.072	Acanthochromis_polyacanthus
ENSSARG00000005875	-	99	94.687	ENSAMEG00000016265	-	97	94.687	Ailuropoda_melanoleuca
ENSSARG00000005875	-	99	88.414	ENSACIG00000015982	polr2a	97	88.278	Amphilophus_citrinellus
ENSSARG00000005875	-	99	88.957	ENSAOCG00000004255	polr2a	97	88.218	Amphiprion_ocellaris
ENSSARG00000005875	-	99	90.954	ENSAPEG00000012623	polr2a	97	88.218	Amphiprion_percula
ENSSARG00000005875	-	99	90.892	ENSATEG00000019644	polr2a	97	88.158	Anabas_testudineus
ENSSARG00000005875	-	99	93.421	ENSACAG00000014561	POLR2A	97	93.421	Anolis_carolinensis
ENSSARG00000005875	-	99	95.036	ENSANAG00000020093	-	97	95.036	Aotus_nancymaae
ENSSARG00000005875	-	99	90.706	ENSACLG00000006735	polr2a	95	89.892	Astatotilapia_calliptera
ENSSARG00000005875	-	99	91.078	ENSAMXG00000020046	polr2a	95	90.251	Astyanax_mexicanus
ENSSARG00000005875	-	99	95.036	ENSBTAG00000046765	POLR2A	97	95.036	Bos_taurus
ENSSARG00000005875	-	99	67.649	WBGene00000123	ama-1	98	67.143	Caenorhabditis_elegans
ENSSARG00000005875	-	99	94.976	ENSCAFG00000016532	POLR2A	99	94.976	Canis_familiaris
ENSSARG00000005875	-	99	93.903	ENSCAFG00020007929	-	97	93.903	Canis_lupus_dingo
ENSSARG00000005875	-	99	95.036	ENSCHIG00000027173	-	97	95.036	Capra_hircus
ENSSARG00000005875	-	99	92.358	ENSTSYG00000012803	-	98	92.174	Carlito_syrichta
ENSSARG00000005875	-	98	93.260	ENSCAPG00000001882	-	98	93.480	Cavia_aperea
ENSSARG00000005875	-	99	93.441	ENSCPOG00000014812	-	98	93.167	Cavia_porcellus
ENSSARG00000005875	-	99	95.036	ENSCCAG00000020938	-	97	95.036	Cebus_capucinus
ENSSARG00000005875	-	99	94.976	ENSCATG00000013680	-	97	94.976	Cercocebus_atys
ENSSARG00000005875	-	99	94.856	ENSCLAG00000012196	-	97	94.856	Chinchilla_lanigera
ENSSARG00000005875	-	99	86.147	ENSCSAG00000011644	-	91	86.147	Chlorocebus_sabaeus
ENSSARG00000005875	-	99	90.539	ENSCPBG00000012697	POLR2A	97	90.539	Chrysemys_picta_bellii
ENSSARG00000005875	-	98	73.103	ENSCING00000007884	-	99	73.194	Ciona_intestinalis
ENSSARG00000005875	-	98	73.190	ENSCSAVG00000008334	-	99	70.756	Ciona_savignyi
ENSSARG00000005875	-	99	94.199	ENSCANG00000010622	-	97	94.199	Colobus_angolensis_palliatus
ENSSARG00000005875	-	99	88.277	ENSCGRG00001003538	Polr2a	98	87.291	Cricetulus_griseus_chok1gshd
ENSSARG00000005875	-	99	91.048	ENSCGRG00000012105	Polr2a	97	91.366	Cricetulus_griseus_crigri
ENSSARG00000005875	-	99	90.211	ENSCSEG00000002635	polr2a	97	87.500	Cynoglossus_semilaevis
ENSSARG00000005875	-	99	91.078	ENSCVAG00000005156	polr2a	95	90.251	Cyprinodon_variegatus
ENSSARG00000005875	-	99	90.712	ENSDARG00000099966	polr2a	95	89.898	Danio_rerio
ENSSARG00000005875	-	95	99.694	ENSDNOG00000016482	-	93	99.694	Dasypus_novemcinctus
ENSSARG00000005875	-	99	95.036	ENSDORG00000008667	Polr2a	97	95.036	Dipodomys_ordii
ENSSARG00000005875	-	99	68.044	FBgn0003277	RpII215	92	71.665	Drosophila_melanogaster
ENSSARG00000005875	-	93	90.547	ENSETEG00000002540	-	81	90.547	Echinops_telfairi
ENSSARG00000005875	-	99	84.913	ENSEBUG00000013967	polr2a	93	83.633	Eptatretus_burgeri
ENSSARG00000005875	-	99	93.002	ENSEASG00005019114	-	98	93.002	Equus_asinus_asinus
ENSSARG00000005875	-	99	94.976	ENSECAG00000018485	POLR2A	97	94.976	Equus_caballus
ENSSARG00000005875	-	89	95.861	ENSEEUG00000001154	-	92	95.861	Erinaceus_europaeus
ENSSARG00000005875	-	99	86.823	ENSELUG00000014284	polr2a	87	86.964	Esox_lucius
ENSSARG00000005875	-	99	94.976	ENSFDAG00000008287	-	97	94.976	Fukomys_damarensis
ENSSARG00000005875	-	99	91.016	ENSFHEG00000001768	polr2a	98	90.191	Fundulus_heteroclitus
ENSSARG00000005875	-	97	87.258	ENSGMOG00000007725	polr2a	99	87.091	Gadus_morhua
ENSSARG00000005875	-	99	91.016	ENSGAFG00000005389	polr2a	94	90.191	Gambusia_affinis
ENSSARG00000005875	-	98	87.372	ENSGACG00000019366	polr2a	99	86.901	Gasterosteus_aculeatus
ENSSARG00000005875	-	99	93.019	ENSGGOG00000014800	-	96	97.972	Gorilla_gorilla
ENSSARG00000005875	-	99	90.706	ENSHBUG00000018937	polr2a	99	89.892	Haplochromis_burtoni
ENSSARG00000005875	-	99	94.976	ENSHGLG00000012381	POLR2A	97	94.976	Heterocephalus_glaber_female
ENSSARG00000005875	-	99	94.976	ENSHGLG00100014843	POLR2A	97	94.976	Heterocephalus_glaber_male
ENSSARG00000005875	-	99	90.458	ENSHCOG00000011874	polr2a	95	89.653	Hippocampus_comes
ENSSARG00000005875	-	99	90.520	ENSIPUG00000002613	Polr2a	95	89.713	Ictalurus_punctatus
ENSSARG00000005875	-	99	95.036	ENSSTOG00000001304	-	97	95.036	Ictidomys_tridecemlineatus
ENSSARG00000005875	-	99	94.916	ENSJJAG00000013049	Polr2a	97	94.916	Jaculus_jaculus
ENSSARG00000005875	-	95	72.022	ENSKMAG00000016343	polr2a	85	72.022	Kryptolebias_marmoratus
ENSSARG00000005875	-	99	90.830	ENSLBEG00000027652	polr2a	95	90.012	Labrus_bergylta
ENSSARG00000005875	-	94	95.821	ENSLACG00000012071	POLR2A	94	95.821	Latimeria_chalumnae
ENSSARG00000005875	-	99	91.195	ENSLOCG00000013863	polr2a	93	90.132	Lepisosteus_oculatus
ENSSARG00000005875	-	99	95.036	ENSLAFG00000008626	-	98	95.036	Loxodonta_africana
ENSSARG00000005875	-	59	98.163	ENSMFAG00000007042	-	99	98.163	Macaca_fascicularis
ENSSARG00000005875	-	99	94.976	ENSMMUG00000023620	-	97	94.976	Macaca_mulatta
ENSSARG00000005875	-	99	94.557	ENSMNEG00000040407	-	97	94.557	Macaca_nemestrina
ENSSARG00000005875	-	99	89.168	ENSMLEG00000030263	-	99	98.163	Mandrillus_leucophaeus
ENSSARG00000005875	-	99	90.706	ENSMAMG00000003351	polr2a	95	89.892	Mastacembelus_armatus
ENSSARG00000005875	-	99	90.706	ENSMZEG00005021429	polr2a	95	89.892	Maylandia_zebra
ENSSARG00000005875	-	59	99.796	ENSMAUG00000021055	-	99	99.796	Mesocricetus_auratus
ENSSARG00000005875	-	99	94.916	ENSMICG00000013372	-	98	98.569	Microcebus_murinus
ENSSARG00000005875	-	99	90.638	ENSMOCG00000018279	Polr2a	92	90.507	Microtus_ochrogaster
ENSSARG00000005875	-	99	90.273	ENSMMOG00000012515	polr2a	95	89.474	Mola_mola
ENSSARG00000005875	-	99	94.557	ENSMODG00000007009	-	97	94.557	Monodelphis_domestica
ENSSARG00000005875	-	99	90.847	ENSMALG00000008716	polr2a	95	89.952	Monopterus_albus
ENSSARG00000005875	-	99	95.036	MGP_CAROLIEiJ_G0016587	Polr2a	94	92.823	Mus_caroli
ENSSARG00000005875	-	99	95.036	ENSMUSG00000005198	Polr2a	94	92.823	Mus_musculus
ENSSARG00000005875	-	99	92.912	MGP_PahariEiJ_G0017718	Polr2a	97	92.912	Mus_pahari
ENSSARG00000005875	-	99	95.036	MGP_SPRETEiJ_G0017423	Polr2a	94	92.823	Mus_spretus
ENSSARG00000005875	-	99	94.916	ENSMPUG00000009648	-	97	94.916	Mustela_putorius_furo
ENSSARG00000005875	-	99	94.504	ENSMLUG00000009088	-	97	94.504	Myotis_lucifugus
ENSSARG00000005875	-	99	95.036	ENSNGAG00000002543	Polr2a	97	95.036	Nannospalax_galili
ENSSARG00000005875	-	99	88.228	ENSNBRG00000002005	polr2a	95	88.038	Neolamprologus_brichardi
ENSSARG00000005875	-	99	93.735	ENSNLEG00000009460	-	97	93.735	Nomascus_leucogenys
ENSSARG00000005875	-	93	90.283	ENSMEUG00000008611	-	96	90.283	Notamacropus_eugenii
ENSSARG00000005875	-	94	95.644	ENSOPRG00000015116	-	99	95.644	Ochotona_princeps
ENSSARG00000005875	-	99	90.267	ENSODEG00000017674	-	98	90.113	Octodon_degus
ENSSARG00000005875	-	99	90.954	ENSONIG00000009231	polr2a	95	90.132	Oreochromis_niloticus
ENSSARG00000005875	-	56	97.749	ENSOANG00000003303	-	98	97.749	Ornithorhynchus_anatinus
ENSSARG00000005875	-	99	93.853	ENSOCUG00000017929	-	97	93.717	Oryctolagus_cuniculus
ENSSARG00000005875	-	99	90.706	ENSORLG00000006431	polr2a	97	87.919	Oryzias_latipes
ENSSARG00000005875	-	99	90.706	ENSORLG00020010235	polr2a	97	87.919	Oryzias_latipes_hni
ENSSARG00000005875	-	99	90.706	ENSORLG00015007075	polr2a	97	87.919	Oryzias_latipes_hsok
ENSSARG00000005875	-	96	90.807	ENSOMEG00000010713	polr2a	100	90.807	Oryzias_melastigma
ENSSARG00000005875	-	99	94.856	ENSOGAG00000033608	-	97	94.856	Otolemur_garnettii
ENSSARG00000005875	-	99	95.036	ENSOARG00000013874	-	99	95.036	Ovis_aries
ENSSARG00000005875	-	99	92.604	ENSPPAG00000043734	-	96	92.225	Pan_paniscus
ENSSARG00000005875	-	99	93.735	ENSPTRG00000008691	POLR2A	97	93.735	Pan_troglodytes
ENSSARG00000005875	-	99	94.199	ENSPANG00000024099	-	97	94.199	Papio_anubis
ENSSARG00000005875	-	98	76.134	ENSPKIG00000005727	polr2a	85	79.048	Paramormyrops_kingsleyae
ENSSARG00000005875	-	98	92.840	ENSPSIG00000014006	POLR2A	100	92.840	Pelodiscus_sinensis
ENSSARG00000005875	-	98	90.716	ENSPMGG00000019734	polr2a	97	91.067	Periophthalmus_magnuspinnatus
ENSSARG00000005875	-	99	95.036	ENSPEMG00000012521	Polr2a	97	95.036	Peromyscus_maniculatus_bairdii
ENSSARG00000005875	-	96	95.474	ENSPCIG00000028851	-	82	95.474	Phascolarctos_cinereus
ENSSARG00000005875	-	99	91.016	ENSPFOG00000007890	polr2a	98	90.191	Poecilia_formosa
ENSSARG00000005875	-	99	91.016	ENSPLAG00000007399	polr2a	98	90.191	Poecilia_latipinna
ENSSARG00000005875	-	99	91.016	ENSPMEG00000002071	polr2a	98	90.191	Poecilia_mexicana
ENSSARG00000005875	-	99	91.016	ENSPREG00000013122	polr2a	97	88.218	Poecilia_reticulata
ENSSARG00000005875	-	99	95.036	ENSPPYG00000007924	-	97	95.036	Pongo_abelii
ENSSARG00000005875	-	90	99.606	ENSPCAG00000006951	-	88	99.606	Procavia_capensis
ENSSARG00000005875	-	99	93.657	ENSPCOG00000025260	-	97	93.657	Propithecus_coquereli
ENSSARG00000005875	-	99	94.797	ENSPVAG00000005069	-	97	94.797	Pteropus_vampyrus
ENSSARG00000005875	-	99	90.768	ENSPNYG00000022340	polr2a	95	89.952	Pundamilia_nyererei
ENSSARG00000005875	-	99	90.954	ENSPNAG00000011237	polr2a	95	90.132	Pygocentrus_nattereri
ENSSARG00000005875	-	99	94.976	ENSRNOG00000028834	Polr2a	97	94.976	Rattus_norvegicus
ENSSARG00000005875	-	99	94.677	ENSRBIG00000002471	-	98	92.763	Rhinopithecus_bieti
ENSSARG00000005875	-	99	94.976	ENSRROG00000029583	-	97	94.976	Rhinopithecus_roxellana
ENSSARG00000005875	-	97	84.000	YDL140C	RPO21	98	49.127	Saccharomyces_cerevisiae
ENSSARG00000005875	-	99	95.036	ENSSBOG00000000808	-	97	95.036	Saimiri_boliviensis_boliviensis
ENSSARG00000005875	-	99	94.557	ENSSHAG00000002858	-	96	94.557	Sarcophilus_harrisii
ENSSARG00000005875	-	99	90.830	ENSSFOG00015023275	polr2a	95	90.012	Scleropages_formosus
ENSSARG00000005875	-	99	90.335	ENSSMAG00000009137	polr2a	95	89.533	Scophthalmus_maximus
ENSSARG00000005875	-	99	90.892	ENSSDUG00000020466	polr2a	95	90.072	Seriola_dumerili
ENSSARG00000005875	-	99	90.892	ENSSLDG00000020613	polr2a	95	90.072	Seriola_lalandi_dorsalis
ENSSARG00000005875	-	99	90.892	ENSSPAG00000016741	polr2a	85	90.072	Stegastes_partitus
ENSSARG00000005875	-	99	94.139	ENSSSCG00000028278	-	97	94.139	Sus_scrofa
ENSSARG00000005875	-	96	85.263	ENSTRUG00000012320	polr2a	80	85.245	Takifugu_rubripes
ENSSARG00000005875	-	96	89.405	ENSTNIG00000010136	polr2a	97	88.517	Tetraodon_nigroviridis
ENSSARG00000005875	-	70	100.000	ENSTBEG00000013294	-	53	100.000	Tupaia_belangeri
ENSSARG00000005875	-	99	93.182	ENSTTRG00000014273	-	97	93.182	Tursiops_truncatus
ENSSARG00000005875	-	99	94.630	ENSUAMG00000014866	-	99	92.184	Ursus_americanus
ENSSARG00000005875	-	91	100.000	ENSUMAG00000015732	-	97	100.000	Ursus_maritimus
ENSSARG00000005875	-	58	97.342	ENSVPAG00000008842	-	71	97.342	Vicugna_pacos
ENSSARG00000005875	-	99	94.976	ENSVVUG00000027878	-	96	94.976	Vulpes_vulpes
ENSSARG00000005875	-	98	92.242	ENSXETG00000012465	polr2a	98	92.242	Xenopus_tropicalis
ENSSARG00000005875	-	99	88.290	ENSXCOG00000001804	polr2a	99	88.158	Xiphophorus_couchianus
ENSSARG00000005875	-	99	90.954	ENSXMAG00000015687	polr2a	95	90.132	Xiphophorus_maculatus