EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSARG00000005940 (Gene tree)
Gene ID: -
Gene Symbol: A1CF
Alias: ACF|ACF64|ACF65|APOBEC1CF|ASP
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Sorex_araneus
Status: putative
Strand: Minus strand
Length: 59015 bases
Position: chrGeneScaffold_4092:44064-103078
Accession: 24086
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSARP00000005384	DND1_DSRM	PF14709.7	5.4e-25	1	1
ENSSARP00000005384	RRM_1	PF00076.22	2.5e-36	1	3
ENSSARP00000005384	RRM_1	PF00076.22	2.5e-36	2	3
ENSSARP00000005384	RRM_1	PF00076.22	2.5e-36	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSART00000005940	A1CF-201	1755	-	ENSSARP00000005384	584 (aa)	-	UPI000158209D

Gene Model

Click here to download ENSSARG00000005940's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSARG00000005940's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSARG00000005940	A1CF	69	50.721	ENSSARG00000001735	RBM47	67	50.721
ENSSARG00000005940	A1CF	65	58.511	ENSSARG00000006520	RBM46	71	58.511

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSARG00000005940	A1CF	99	82.624	ENSG00000148584	A1CF	86	98.256	Homo_sapiens
ENSSARG00000005940	A1CF	95	66.135	ENSAPOG00000008259	a1cf	94	66.135	Acanthochromis_polyacanthus
ENSSARG00000005940	A1CF	96	82.686	ENSAMEG00000000523	A1CF	95	83.392	Ailuropoda_melanoleuca
ENSSARG00000005940	A1CF	95	69.686	ENSACIG00000008632	a1cf	95	69.861	Amphilophus_citrinellus
ENSSARG00000005940	A1CF	95	67.657	ENSAOCG00000023744	a1cf	95	68.007	Amphiprion_ocellaris
ENSSARG00000005940	A1CF	95	66.724	ENSAPEG00000009537	a1cf	95	67.069	Amphiprion_percula
ENSSARG00000005940	A1CF	95	70.087	ENSATEG00000013720	a1cf	95	70.435	Anabas_testudineus
ENSSARG00000005940	A1CF	96	77.778	ENSAPLG00000002964	A1CF	95	77.249	Anas_platyrhynchos
ENSSARG00000005940	A1CF	95	75.806	ENSACAG00000015269	A1CF	95	74.910	Anolis_carolinensis
ENSSARG00000005940	A1CF	96	85.484	ENSANAG00000019974	A1CF	99	81.513	Aotus_nancymaae
ENSSARG00000005940	A1CF	95	67.714	ENSACLG00000017428	a1cf	95	68.412	Astatotilapia_calliptera
ENSSARG00000005940	A1CF	90	68.199	ENSAMXG00000018180	a1cf	93	68.199	Astyanax_mexicanus
ENSSARG00000005940	A1CF	96	85.484	ENSBTAG00000021195	A1CF	95	85.855	Bos_taurus
ENSSARG00000005940	A1CF	96	84.629	ENSCJAG00000005045	A1CF	95	84.276	Callithrix_jacchus
ENSSARG00000005940	A1CF	96	83.039	ENSCAFG00000015581	A1CF	95	83.216	Canis_familiaris
ENSSARG00000005940	A1CF	96	83.039	ENSCAFG00020026421	A1CF	96	83.304	Canis_lupus_dingo
ENSSARG00000005940	A1CF	96	83.392	ENSCHIG00000020411	A1CF	95	83.392	Capra_hircus
ENSSARG00000005940	A1CF	99	81.218	ENSTSYG00000001755	A1CF	100	85.018	Carlito_syrichta
ENSSARG00000005940	A1CF	87	72.653	ENSCAPG00000017386	A1CF	90	72.653	Cavia_aperea
ENSSARG00000005940	A1CF	96	82.862	ENSCPOG00000009807	A1CF	95	82.686	Cavia_porcellus
ENSSARG00000005940	A1CF	99	81.788	ENSCCAG00000018168	A1CF	99	81.450	Cebus_capucinus
ENSSARG00000005940	A1CF	96	84.946	ENSCATG00000043715	A1CF	95	84.588	Cercocebus_atys
ENSSARG00000005940	A1CF	96	83.422	ENSCLAG00000010424	A1CF	95	83.422	Chinchilla_lanigera
ENSSARG00000005940	A1CF	96	83.746	ENSCSAG00000007032	A1CF	95	83.392	Chlorocebus_sabaeus
ENSSARG00000005940	A1CF	99	81.911	ENSCHOG00000009089	A1CF	99	81.911	Choloepus_hoffmanni
ENSSARG00000005940	A1CF	96	76.896	ENSCPBG00000026464	A1CF	95	76.896	Chrysemys_picta_bellii
ENSSARG00000005940	A1CF	96	83.922	ENSCANG00000038032	A1CF	95	83.569	Colobus_angolensis_palliatus
ENSSARG00000005940	A1CF	96	81.802	ENSCGRG00001017413	A1cf	95	81.802	Cricetulus_griseus_chok1gshd
ENSSARG00000005940	A1CF	96	81.095	ENSCGRG00000017332	A1cf	95	81.095	Cricetulus_griseus_crigri
ENSSARG00000005940	A1CF	95	68.007	ENSCSEG00000002361	a1cf	95	67.776	Cynoglossus_semilaevis
ENSSARG00000005940	A1CF	95	68.870	ENSCVAG00000010520	a1cf	95	69.391	Cyprinodon_variegatus
ENSSARG00000005940	A1CF	95	71.758	ENSDARG00000002968	a1cf	95	71.758	Danio_rerio
ENSSARG00000005940	A1CF	96	83.922	ENSDNOG00000002829	A1CF	95	83.922	Dasypus_novemcinctus
ENSSARG00000005940	A1CF	83	89.806	ENSETEG00000012527	A1CF	84	89.806	Echinops_telfairi
ENSSARG00000005940	A1CF	97	84.000	ENSEASG00005012924	A1CF	99	84.000	Equus_asinus_asinus
ENSSARG00000005940	A1CF	96	84.155	ENSECAG00000010424	A1CF	95	84.155	Equus_caballus
ENSSARG00000005940	A1CF	64	100.000	ENSEEUG00000000013	A1CF	77	100.000	Erinaceus_europaeus
ENSSARG00000005940	A1CF	96	69.406	ENSELUG00000003159	a1cf	97	68.089	Esox_lucius
ENSSARG00000005940	A1CF	96	83.154	ENSFCAG00000011179	A1CF	95	83.692	Felis_catus
ENSSARG00000005940	A1CF	96	77.460	ENSFALG00000013183	A1CF	95	77.281	Ficedula_albicollis
ENSSARG00000005940	A1CF	96	83.692	ENSFDAG00000019371	A1CF	95	83.692	Fukomys_damarensis
ENSSARG00000005940	A1CF	87	67.552	ENSFHEG00000019652	a1cf	90	68.121	Fundulus_heteroclitus
ENSSARG00000005940	A1CF	95	62.326	ENSGMOG00000018943	a1cf	95	62.847	Gadus_morhua
ENSSARG00000005940	A1CF	99	75.085	ENSGALG00000003765	A1CF	99	74.915	Gallus_gallus
ENSSARG00000005940	A1CF	95	62.214	ENSGAFG00000014868	a1cf	95	63.445	Gambusia_affinis
ENSSARG00000005940	A1CF	95	65.803	ENSGACG00000010241	a1cf	95	66.090	Gasterosteus_aculeatus
ENSSARG00000005940	A1CF	95	77.168	ENSGAGG00000016508	A1CF	97	77.168	Gopherus_agassizii
ENSSARG00000005940	A1CF	99	81.681	ENSGGOG00000009670	A1CF	99	81.681	Gorilla_gorilla
ENSSARG00000005940	A1CF	95	69.338	ENSHBUG00000021959	a1cf	95	69.686	Haplochromis_burtoni
ENSSARG00000005940	A1CF	96	83.392	ENSHGLG00000008955	A1CF	95	83.392	Heterocephalus_glaber_female
ENSSARG00000005940	A1CF	96	82.686	ENSHGLG00100000518	A1CF	95	82.686	Heterocephalus_glaber_male
ENSSARG00000005940	A1CF	95	61.750	ENSHCOG00000017669	a1cf	95	63.356	Hippocampus_comes
ENSSARG00000005940	A1CF	85	72.441	ENSIPUG00000010367	a1cf	90	72.962	Ictalurus_punctatus
ENSSARG00000005940	A1CF	95	68.493	ENSKMAG00000006568	a1cf	95	68.664	Kryptolebias_marmoratus
ENSSARG00000005940	A1CF	95	66.667	ENSLBEG00000020994	a1cf	93	67.474	Labrus_bergylta
ENSSARG00000005940	A1CF	96	73.310	ENSLACG00000008061	A1CF	95	72.776	Latimeria_chalumnae
ENSSARG00000005940	A1CF	96	71.454	ENSLOCG00000006302	a1cf	95	71.629	Lepisosteus_oculatus
ENSSARG00000005940	A1CF	96	83.216	ENSLAFG00000015462	A1CF	95	83.216	Loxodonta_africana
ENSSARG00000005940	A1CF	96	85.305	ENSMFAG00000035948	A1CF	95	84.946	Macaca_fascicularis
ENSSARG00000005940	A1CF	99	82.624	ENSMMUG00000007077	A1CF	99	82.283	Macaca_mulatta
ENSSARG00000005940	A1CF	96	84.946	ENSMNEG00000031454	A1CF	99	80.840	Macaca_nemestrina
ENSSARG00000005940	A1CF	96	83.746	ENSMLEG00000037223	A1CF	99	79.595	Mandrillus_leucophaeus
ENSSARG00000005940	A1CF	95	68.007	ENSMAMG00000010402	a1cf	95	68.586	Mastacembelus_armatus
ENSSARG00000005940	A1CF	95	68.190	ENSMZEG00005013245	a1cf	95	67.487	Maylandia_zebra
ENSSARG00000005940	A1CF	96	77.113	ENSMGAG00000001507	A1CF	95	76.937	Meleagris_gallopavo
ENSSARG00000005940	A1CF	96	81.449	ENSMAUG00000007422	A1cf	95	81.449	Mesocricetus_auratus
ENSSARG00000005940	A1CF	100	81.198	ENSMICG00000003377	A1CF	100	81.364	Microcebus_murinus
ENSSARG00000005940	A1CF	96	81.979	ENSMOCG00000021536	A1cf	95	81.979	Microtus_ochrogaster
ENSSARG00000005940	A1CF	88	64.650	ENSMMOG00000009422	a1cf	95	62.238	Mola_mola
ENSSARG00000005940	A1CF	85	81.212	ENSMODG00000016478	A1CF	91	81.098	Monodelphis_domestica
ENSSARG00000005940	A1CF	95	65.597	ENSMALG00000012992	a1cf	94	64.706	Monopterus_albus
ENSSARG00000005940	A1CF	96	82.079	MGP_CAROLIEiJ_G0022873	A1cf	95	82.079	Mus_caroli
ENSSARG00000005940	A1CF	96	82.079	ENSMUSG00000052595	A1cf	95	82.079	Mus_musculus
ENSSARG00000005940	A1CF	96	81.720	MGP_PahariEiJ_G0014366	A1cf	95	81.720	Mus_pahari
ENSSARG00000005940	A1CF	96	81.541	MGP_SPRETEiJ_G0023792	A1cf	95	81.541	Mus_spretus
ENSSARG00000005940	A1CF	96	77.032	ENSMPUG00000016971	A1CF	95	76.678	Mustela_putorius_furo
ENSSARG00000005940	A1CF	96	83.569	ENSMLUG00000016071	A1CF	95	83.569	Myotis_lucifugus
ENSSARG00000005940	A1CF	96	82.509	ENSNGAG00000015136	A1cf	95	82.509	Nannospalax_galili
ENSSARG00000005940	A1CF	95	69.338	ENSNBRG00000001712	a1cf	95	69.686	Neolamprologus_brichardi
ENSSARG00000005940	A1CF	96	84.806	ENSNLEG00000012028	A1CF	98	82.872	Nomascus_leucogenys
ENSSARG00000005940	A1CF	95	80.180	ENSMEUG00000015909	A1CF	100	79.820	Notamacropus_eugenii
ENSSARG00000005940	A1CF	84	93.145	ENSOPRG00000010667	A1CF	91	93.186	Ochotona_princeps
ENSSARG00000005940	A1CF	95	68.990	ENSONIG00000019105	a1cf	95	69.512	Oreochromis_niloticus
ENSSARG00000005940	A1CF	73	76.977	ENSOANG00000007360	A1CF	93	76.977	Ornithorhynchus_anatinus
ENSSARG00000005940	A1CF	96	83.721	ENSOCUG00000011587	A1CF	95	84.079	Oryctolagus_cuniculus
ENSSARG00000005940	A1CF	95	65.523	ENSORLG00000013342	a1cf	95	64.906	Oryzias_latipes
ENSSARG00000005940	A1CF	95	67.182	ENSORLG00020000586	a1cf	95	67.067	Oryzias_latipes_hni
ENSSARG00000005940	A1CF	95	67.010	ENSORLG00015018569	a1cf	95	67.238	Oryzias_latipes_hsok
ENSSARG00000005940	A1CF	95	68.182	ENSOMEG00000013531	a1cf	95	67.832	Oryzias_melastigma
ENSSARG00000005940	A1CF	96	81.802	ENSOGAG00000012884	A1CF	95	82.155	Otolemur_garnettii
ENSSARG00000005940	A1CF	96	83.569	ENSOARG00000013695	A1CF	95	83.569	Ovis_aries
ENSSARG00000005940	A1CF	99	81.681	ENSPPAG00000028115	A1CF	99	81.681	Pan_paniscus
ENSSARG00000005940	A1CF	97	82.343	ENSPPRG00000012180	A1CF	95	82.867	Panthera_pardus
ENSSARG00000005940	A1CF	97	82.343	ENSPTIG00000021223	A1CF	95	82.867	Panthera_tigris_altaica
ENSSARG00000005940	A1CF	96	85.484	ENSPTRG00000002508	A1CF	98	84.099	Pan_troglodytes
ENSSARG00000005940	A1CF	96	85.305	ENSPANG00000021988	A1CF	95	84.946	Papio_anubis
ENSSARG00000005940	A1CF	95	70.403	ENSPKIG00000025176	a1cf	95	70.228	Paramormyrops_kingsleyae
ENSSARG00000005940	A1CF	96	78.175	ENSPSIG00000010318	A1CF	95	78.175	Pelodiscus_sinensis
ENSSARG00000005940	A1CF	83	62.500	ENSPMGG00000013359	a1cf	94	59.745	Periophthalmus_magnuspinnatus
ENSSARG00000005940	A1CF	96	81.979	ENSPEMG00000015021	A1cf	95	81.979	Peromyscus_maniculatus_bairdii
ENSSARG00000005940	A1CF	96	79.785	ENSPCIG00000002175	A1CF	95	79.428	Phascolarctos_cinereus
ENSSARG00000005940	A1CF	95	67.753	ENSPFOG00000007437	-	95	68.268	Poecilia_formosa
ENSSARG00000005940	A1CF	95	67.925	ENSPFOG00000006683	a1cf	95	68.439	Poecilia_formosa
ENSSARG00000005940	A1CF	95	68.696	ENSPLAG00000001210	-	95	69.217	Poecilia_latipinna
ENSSARG00000005940	A1CF	95	68.696	ENSPLAG00000000026	a1cf	95	69.217	Poecilia_latipinna
ENSSARG00000005940	A1CF	85	87.719	ENSPMEG00000000921	a1cf	94	87.719	Poecilia_mexicana
ENSSARG00000005940	A1CF	85	87.719	ENSPMEG00000015529	-	94	87.719	Poecilia_mexicana
ENSSARG00000005940	A1CF	95	67.581	ENSPREG00000016298	a1cf	95	68.096	Poecilia_reticulata
ENSSARG00000005940	A1CF	96	86.022	ENSPPYG00000002819	A1CF	95	86.022	Pongo_abelii
ENSSARG00000005940	A1CF	80	81.290	ENSPCAG00000006463	A1CF	70	92.308	Procavia_capensis
ENSSARG00000005940	A1CF	96	83.069	ENSPCOG00000024172	A1CF	95	83.069	Propithecus_coquereli
ENSSARG00000005940	A1CF	95	68.557	ENSPNYG00000017944	a1cf	95	68.900	Pundamilia_nyererei
ENSSARG00000005940	A1CF	95	73.498	ENSPNAG00000007704	a1cf	95	73.322	Pygocentrus_nattereri
ENSSARG00000005940	A1CF	96	82.796	ENSRNOG00000033195	A1cf	95	82.796	Rattus_norvegicus
ENSSARG00000005940	A1CF	96	77.113	ENSRBIG00000042892	A1CF	100	82.505	Rhinopithecus_bieti
ENSSARG00000005940	A1CF	95	85.560	ENSRROG00000041398	A1CF	100	84.615	Rhinopithecus_roxellana
ENSSARG00000005940	A1CF	100	81.260	ENSSBOG00000021930	A1CF	100	84.493	Saimiri_boliviensis_boliviensis
ENSSARG00000005940	A1CF	96	79.428	ENSSHAG00000005096	A1CF	95	78.891	Sarcophilus_harrisii
ENSSARG00000005940	A1CF	86	89.535	ENSSFOG00015011774	a1cf	94	90.058	Scleropages_formosus
ENSSARG00000005940	A1CF	95	66.895	ENSSMAG00000013271	a1cf	95	67.238	Scophthalmus_maximus
ENSSARG00000005940	A1CF	95	68.531	ENSSDUG00000013930	a1cf	95	68.531	Seriola_dumerili
ENSSARG00000005940	A1CF	95	63.316	ENSSLDG00000004290	a1cf	95	63.316	Seriola_lalandi_dorsalis
ENSSARG00000005940	A1CF	99	74.043	ENSSPUG00000006797	A1CF	99	73.544	Sphenodon_punctatus
ENSSARG00000005940	A1CF	96	84.276	ENSSSCG00000010431	A1CF	95	84.276	Sus_scrofa
ENSSARG00000005940	A1CF	96	76.801	ENSTGUG00000005090	A1CF	95	76.626	Taeniopygia_guttata
ENSSARG00000005940	A1CF	95	65.292	ENSTRUG00000001982	a1cf	95	65.979	Takifugu_rubripes
ENSSARG00000005940	A1CF	86	87.719	ENSTNIG00000003580	a1cf	86	87.719	Tetraodon_nigroviridis
ENSSARG00000005940	A1CF	99	77.949	ENSTTRG00000013190	A1CF	99	77.949	Tursiops_truncatus
ENSSARG00000005940	A1CF	96	84.588	ENSUAMG00000020065	A1CF	95	84.588	Ursus_americanus
ENSSARG00000005940	A1CF	96	83.039	ENSUMAG00000011162	A1CF	98	83.039	Ursus_maritimus
ENSSARG00000005940	A1CF	87	79.532	ENSVPAG00000006130	A1CF	86	79.532	Vicugna_pacos
ENSSARG00000005940	A1CF	96	84.229	ENSVVUG00000002504	A1CF	95	84.229	Vulpes_vulpes
ENSSARG00000005940	A1CF	84	89.535	ENSXETG00000006611	a1cf	83	89.535	Xenopus_tropicalis
ENSSARG00000005940	A1CF	95	69.877	ENSXCOG00000003302	a1cf	95	69.877	Xiphophorus_couchianus
ENSSARG00000005940	A1CF	95	68.912	ENSXMAG00000016703	a1cf	95	68.912	Xiphophorus_maculatus