EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSARG00000005960 (Gene tree)
Gene ID: -
Gene Symbol: SF3A1
Alias: PRPF21|Prp21|SAP114|SF3a120
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Sorex_araneus
Status: putative
Strand: Minus strand
Length: 15950 bases
Position: chrGeneScaffold_1026:5486-21435
Accession: 10765
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSARP00000005411	PRP21_like_P	PF12230.8	3e-52	1	1
ENSSARP00000005411	Surp	PF01805.20	2.7e-31	1	2
ENSSARP00000005411	Surp	PF01805.20	2.7e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSART00000005971	SF3A1-201	2310	-	ENSSARP00000005411	769 (aa)	-	UPI0001580349

Gene Model

Click here to download ENSSARG00000005960's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSARG00000005960's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSARG00000005960	SF3A1	100	95.466	ENSG00000099995	SF3A1	97	95.466	Homo_sapiens
ENSSARG00000005960	SF3A1	100	82.558	ENSAPOG00000020465	sf3a1	98	82.300	Acanthochromis_polyacanthus
ENSSARG00000005960	SF3A1	99	95.590	ENSAMEG00000007737	SF3A1	97	95.596	Ailuropoda_melanoleuca
ENSSARG00000005960	SF3A1	99	82.665	ENSACIG00000020672	sf3a1	98	82.812	Amphilophus_citrinellus
ENSSARG00000005960	SF3A1	99	83.399	ENSAOCG00000003060	sf3a1	97	83.137	Amphiprion_ocellaris
ENSSARG00000005960	SF3A1	99	83.529	ENSAPEG00000010735	sf3a1	97	83.268	Amphiprion_percula
ENSSARG00000005960	SF3A1	99	82.943	ENSATEG00000021201	sf3a1	98	82.452	Anabas_testudineus
ENSSARG00000005960	SF3A1	98	91.017	ENSAPLG00000009057	SF3A1	99	90.992	Anas_platyrhynchos
ENSSARG00000005960	SF3A1	99	85.568	ENSACAG00000009415	SF3A1	97	85.951	Anolis_carolinensis
ENSSARG00000005960	SF3A1	100	95.725	ENSANAG00000032045	SF3A1	97	95.725	Aotus_nancymaae
ENSSARG00000005960	SF3A1	99	82.946	ENSACLG00000012622	sf3a1	98	83.572	Astatotilapia_calliptera
ENSSARG00000005960	SF3A1	100	80.952	ENSAMXG00000005382	sf3a1	98	82.147	Astyanax_mexicanus
ENSSARG00000005960	SF3A1	100	95.984	ENSBTAG00000003390	SF3A1	97	95.984	Bos_taurus
ENSSARG00000005960	SF3A1	86	41.228	WBGene00004188	prp-21	94	41.228	Caenorhabditis_elegans
ENSSARG00000005960	SF3A1	100	95.855	ENSCJAG00000010370	SF3A1	97	95.855	Callithrix_jacchus
ENSSARG00000005960	SF3A1	100	95.596	ENSCAFG00000012559	SF3A1	97	95.596	Canis_familiaris
ENSSARG00000005960	SF3A1	100	95.596	ENSCAFG00020000838	SF3A1	97	95.596	Canis_lupus_dingo
ENSSARG00000005960	SF3A1	100	95.855	ENSCHIG00000018642	SF3A1	97	95.855	Capra_hircus
ENSSARG00000005960	SF3A1	100	95.725	ENSTSYG00000004739	SF3A1	97	95.725	Carlito_syrichta
ENSSARG00000005960	SF3A1	97	77.207	ENSCAPG00000015414	SF3A1	98	77.207	Cavia_aperea
ENSSARG00000005960	SF3A1	100	95.855	ENSCPOG00000014589	SF3A1	97	95.855	Cavia_porcellus
ENSSARG00000005960	SF3A1	100	95.725	ENSCCAG00000032006	SF3A1	97	95.725	Cebus_capucinus
ENSSARG00000005960	SF3A1	100	95.725	ENSCATG00000029241	SF3A1	97	95.725	Cercocebus_atys
ENSSARG00000005960	SF3A1	100	95.207	ENSCLAG00000006508	SF3A1	97	95.207	Chinchilla_lanigera
ENSSARG00000005960	SF3A1	100	95.596	ENSCSAG00000009470	SF3A1	97	95.596	Chlorocebus_sabaeus
ENSSARG00000005960	SF3A1	60	100.000	ENSCHOG00000005201	SF3A1	66	100.000	Choloepus_hoffmanni
ENSSARG00000005960	SF3A1	99	89.412	ENSCPBG00000007595	SF3A1	97	89.935	Chrysemys_picta_bellii
ENSSARG00000005960	SF3A1	99	48.645	ENSCSAVG00000005608	-	92	62.712	Ciona_savignyi
ENSSARG00000005960	SF3A1	100	95.596	ENSCANG00000033564	SF3A1	97	95.596	Colobus_angolensis_palliatus
ENSSARG00000005960	SF3A1	98	95.263	ENSCGRG00001008933	Sf3a1	97	94.948	Cricetulus_griseus_chok1gshd
ENSSARG00000005960	SF3A1	98	95.263	ENSCGRG00000006127	Sf3a1	97	94.948	Cricetulus_griseus_crigri
ENSSARG00000005960	SF3A1	99	80.233	ENSCSEG00000010792	sf3a1	98	80.545	Cynoglossus_semilaevis
ENSSARG00000005960	SF3A1	99	81.120	ENSCVAG00000004560	sf3a1	98	80.859	Cyprinodon_variegatus
ENSSARG00000005960	SF3A1	99	81.356	ENSDARG00000041887	sf3a1	97	82.008	Danio_rerio
ENSSARG00000005960	SF3A1	100	95.866	ENSDNOG00000010629	SF3A1	97	95.866	Dasypus_novemcinctus
ENSSARG00000005960	SF3A1	100	95.725	ENSDORG00000005613	Sf3a1	97	95.725	Dipodomys_ordii
ENSSARG00000005960	SF3A1	81	57.331	FBgn0266917	Sf3a1	85	54.955	Drosophila_melanogaster
ENSSARG00000005960	SF3A1	86	93.563	ENSETEG00000017194	SF3A1	95	93.862	Echinops_telfairi
ENSSARG00000005960	SF3A1	99	64.347	ENSEBUG00000001285	sf3a1	96	64.321	Eptatretus_burgeri
ENSSARG00000005960	SF3A1	100	95.855	ENSEASG00005010254	SF3A1	97	95.855	Equus_asinus_asinus
ENSSARG00000005960	SF3A1	100	95.855	ENSECAG00000023962	SF3A1	97	95.855	Equus_caballus
ENSSARG00000005960	SF3A1	75	95.082	ENSEEUG00000003159	SF3A1	83	95.082	Erinaceus_europaeus
ENSSARG00000005960	SF3A1	99	81.120	ENSELUG00000022578	sf3a1	97	80.990	Esox_lucius
ENSSARG00000005960	SF3A1	100	95.855	ENSFCAG00000011932	SF3A1	97	95.855	Felis_catus
ENSSARG00000005960	SF3A1	98	89.947	ENSFALG00000006944	SF3A1	97	90.458	Ficedula_albicollis
ENSSARG00000005960	SF3A1	100	95.466	ENSFDAG00000009560	SF3A1	97	95.466	Fukomys_damarensis
ENSSARG00000005960	SF3A1	99	82.513	ENSFHEG00000010866	sf3a1	98	81.995	Fundulus_heteroclitus
ENSSARG00000005960	SF3A1	99	79.581	ENSGMOG00000016024	sf3a1	97	78.080	Gadus_morhua
ENSSARG00000005960	SF3A1	98	90.873	ENSGALG00000007937	SF3A1	97	90.980	Gallus_gallus
ENSSARG00000005960	SF3A1	99	82.222	ENSGAFG00000009111	sf3a1	97	81.699	Gambusia_affinis
ENSSARG00000005960	SF3A1	99	81.152	ENSGACG00000011893	sf3a1	97	81.021	Gasterosteus_aculeatus
ENSSARG00000005960	SF3A1	95	89.754	ENSGAGG00000000762	SF3A1	96	89.891	Gopherus_agassizii
ENSSARG00000005960	SF3A1	100	95.466	ENSGGOG00000012631	SF3A1	97	95.466	Gorilla_gorilla
ENSSARG00000005960	SF3A1	99	82.946	ENSHBUG00000015795	sf3a1	98	83.572	Haplochromis_burtoni
ENSSARG00000005960	SF3A1	100	95.725	ENSHGLG00000007907	SF3A1	97	95.725	Heterocephalus_glaber_female
ENSSARG00000005960	SF3A1	100	95.725	ENSHGLG00100013799	SF3A1	97	95.725	Heterocephalus_glaber_male
ENSSARG00000005960	SF3A1	99	78.879	ENSHCOG00000015423	sf3a1	98	78.618	Hippocampus_comes
ENSSARG00000005960	SF3A1	99	79.036	ENSIPUG00000002470	sf3a1	98	79.948	Ictalurus_punctatus
ENSSARG00000005960	SF3A1	100	95.855	ENSSTOG00000013892	SF3A1	97	95.855	Ictidomys_tridecemlineatus
ENSSARG00000005960	SF3A1	100	95.855	ENSJJAG00000022566	Sf3a1	97	95.855	Jaculus_jaculus
ENSSARG00000005960	SF3A1	99	80.854	ENSKMAG00000002400	sf3a1	98	80.983	Kryptolebias_marmoratus
ENSSARG00000005960	SF3A1	100	80.749	ENSLBEG00000022974	sf3a1	98	80.879	Labrus_bergylta
ENSSARG00000005960	SF3A1	99	85.547	ENSLACG00000003565	SF3A1	97	85.677	Latimeria_chalumnae
ENSSARG00000005960	SF3A1	99	83.766	ENSLOCG00000008251	sf3a1	97	84.286	Lepisosteus_oculatus
ENSSARG00000005960	SF3A1	99	60.489	ENSLAFG00000026032	-	97	60.618	Loxodonta_africana
ENSSARG00000005960	SF3A1	100	95.337	ENSLAFG00000000448	SF3A1	97	95.337	Loxodonta_africana
ENSSARG00000005960	SF3A1	100	95.466	ENSMFAG00000031979	SF3A1	97	95.466	Macaca_fascicularis
ENSSARG00000005960	SF3A1	100	95.466	ENSMMUG00000005547	SF3A1	97	95.466	Macaca_mulatta
ENSSARG00000005960	SF3A1	100	95.337	ENSMNEG00000037229	SF3A1	97	95.337	Macaca_nemestrina
ENSSARG00000005960	SF3A1	100	95.596	ENSMLEG00000041908	SF3A1	97	95.596	Mandrillus_leucophaeus
ENSSARG00000005960	SF3A1	99	82.536	ENSMAMG00000006460	sf3a1	97	82.665	Mastacembelus_armatus
ENSSARG00000005960	SF3A1	99	82.946	ENSMZEG00005009633	sf3a1	98	83.572	Maylandia_zebra
ENSSARG00000005960	SF3A1	98	91.005	ENSMGAG00000001330	SF3A1	99	90.980	Meleagris_gallopavo
ENSSARG00000005960	SF3A1	95	93.981	ENSMAUG00000020317	Sf3a1	94	93.981	Mesocricetus_auratus
ENSSARG00000005960	SF3A1	100	95.596	ENSMICG00000010038	SF3A1	97	95.596	Microcebus_murinus
ENSSARG00000005960	SF3A1	100	95.078	ENSMOCG00000008438	Sf3a1	97	95.078	Microtus_ochrogaster
ENSSARG00000005960	SF3A1	99	80.574	ENSMMOG00000015588	sf3a1	97	80.834	Mola_mola
ENSSARG00000005960	SF3A1	100	94.430	ENSMODG00000009270	SF3A1	97	94.430	Monodelphis_domestica
ENSSARG00000005960	SF3A1	99	83.377	ENSMALG00000000148	sf3a1	99	82.970	Monopterus_albus
ENSSARG00000005960	SF3A1	100	94.689	MGP_CAROLIEiJ_G0016029	Sf3a1	97	94.689	Mus_caroli
ENSSARG00000005960	SF3A1	100	94.689	ENSMUSG00000002129	Sf3a1	97	94.689	Mus_musculus
ENSSARG00000005960	SF3A1	100	94.689	MGP_PahariEiJ_G0016862	Sf3a1	97	94.689	Mus_pahari
ENSSARG00000005960	SF3A1	100	94.689	MGP_SPRETEiJ_G0016870	Sf3a1	97	94.689	Mus_spretus
ENSSARG00000005960	SF3A1	100	95.466	ENSMPUG00000013144	SF3A1	97	95.466	Mustela_putorius_furo
ENSSARG00000005960	SF3A1	100	96.114	ENSMLUG00000002139	SF3A1	97	96.114	Myotis_lucifugus
ENSSARG00000005960	SF3A1	100	95.337	ENSNGAG00000016977	Sf3a1	97	95.337	Nannospalax_galili
ENSSARG00000005960	SF3A1	98	83.926	ENSNBRG00000016642	sf3a1	96	84.190	Neolamprologus_brichardi
ENSSARG00000005960	SF3A1	100	95.596	ENSNLEG00000003686	SF3A1	97	95.596	Nomascus_leucogenys
ENSSARG00000005960	SF3A1	95	84.239	ENSMEUG00000008741	SF3A1	97	84.303	Notamacropus_eugenii
ENSSARG00000005960	SF3A1	100	95.855	ENSOPRG00000016636	SF3A1	97	95.855	Ochotona_princeps
ENSSARG00000005960	SF3A1	100	95.596	ENSODEG00000002571	SF3A1	97	95.596	Octodon_degus
ENSSARG00000005960	SF3A1	99	82.581	ENSONIG00000010848	sf3a1	98	82.943	Oreochromis_niloticus
ENSSARG00000005960	SF3A1	100	95.725	ENSOCUG00000007633	SF3A1	97	95.725	Oryctolagus_cuniculus
ENSSARG00000005960	SF3A1	96	79.892	ENSORLG00000013050	sf3a1	98	80.972	Oryzias_latipes
ENSSARG00000005960	SF3A1	99	78.283	ENSORLG00020003236	sf3a1	93	81.107	Oryzias_latipes_hni
ENSSARG00000005960	SF3A1	100	80.491	ENSORLG00015017411	sf3a1	98	81.395	Oryzias_latipes_hsok
ENSSARG00000005960	SF3A1	100	80.749	ENSOMEG00000013362	sf3a1	98	81.008	Oryzias_melastigma
ENSSARG00000005960	SF3A1	100	95.337	ENSOGAG00000012931	SF3A1	97	95.337	Otolemur_garnettii
ENSSARG00000005960	SF3A1	100	93.653	ENSOARG00000006849	SF3A1	97	93.653	Ovis_aries
ENSSARG00000005960	SF3A1	100	94.430	ENSPPAG00000041790	SF3A1	97	94.430	Pan_paniscus
ENSSARG00000005960	SF3A1	100	95.855	ENSPPRG00000004391	SF3A1	97	95.855	Panthera_pardus
ENSSARG00000005960	SF3A1	100	95.725	ENSPTIG00000000844	SF3A1	100	95.725	Panthera_tigris_altaica
ENSSARG00000005960	SF3A1	100	95.466	ENSPTRG00000014240	SF3A1	97	95.466	Pan_troglodytes
ENSSARG00000005960	SF3A1	100	95.596	ENSPANG00000020772	SF3A1	97	95.596	Papio_anubis
ENSSARG00000005960	SF3A1	85	94.505	ENSPSIG00000012803	SF3A1	96	94.505	Pelodiscus_sinensis
ENSSARG00000005960	SF3A1	99	81.021	ENSPMGG00000023096	sf3a1	100	81.414	Periophthalmus_magnuspinnatus
ENSSARG00000005960	SF3A1	98	95.526	ENSPEMG00000009494	Sf3a1	97	95.207	Peromyscus_maniculatus_bairdii
ENSSARG00000005960	SF3A1	66	75.875	ENSPMAG00000007139	-	89	74.906	Petromyzon_marinus
ENSSARG00000005960	SF3A1	99	94.278	ENSPCIG00000022692	SF3A1	97	94.278	Phascolarctos_cinereus
ENSSARG00000005960	SF3A1	95	76.190	ENSPFOG00000016768	sf3a1	93	75.646	Poecilia_formosa
ENSSARG00000005960	SF3A1	99	82.484	ENSPLAG00000017268	sf3a1	97	81.961	Poecilia_latipinna
ENSSARG00000005960	SF3A1	86	82.380	ENSPMEG00000019811	sf3a1	98	81.627	Poecilia_mexicana
ENSSARG00000005960	SF3A1	99	82.614	ENSPREG00000010347	sf3a1	97	82.484	Poecilia_reticulata
ENSSARG00000005960	SF3A1	100	95.596	ENSPPYG00000011707	SF3A1	97	95.596	Pongo_abelii
ENSSARG00000005960	SF3A1	59	99.528	ENSPCAG00000003266	SF3A1	57	99.528	Procavia_capensis
ENSSARG00000005960	SF3A1	100	95.855	ENSPCOG00000026630	SF3A1	97	95.855	Propithecus_coquereli
ENSSARG00000005960	SF3A1	96	94.631	ENSPVAG00000017719	SF3A1	94	94.631	Pteropus_vampyrus
ENSSARG00000005960	SF3A1	99	82.946	ENSPNYG00000018706	sf3a1	98	83.572	Pundamilia_nyererei
ENSSARG00000005960	SF3A1	99	82.185	ENSPNAG00000003721	sf3a1	98	82.575	Pygocentrus_nattereri
ENSSARG00000005960	SF3A1	100	94.948	ENSRNOG00000005218	Sf3a1	97	94.948	Rattus_norvegicus
ENSSARG00000005960	SF3A1	100	95.596	ENSRBIG00000032167	SF3A1	97	95.596	Rhinopithecus_bieti
ENSSARG00000005960	SF3A1	100	95.596	ENSRROG00000044908	SF3A1	97	95.596	Rhinopithecus_roxellana
ENSSARG00000005960	SF3A1	100	91.731	ENSSBOG00000021960	SF3A1	98	95.646	Saimiri_boliviensis_boliviensis
ENSSARG00000005960	SF3A1	99	91.808	ENSSHAG00000003666	SF3A1	98	91.839	Sarcophilus_harrisii
ENSSARG00000005960	SF3A1	100	81.643	ENSSFOG00015004579	sf3a1	98	82.670	Scleropages_formosus
ENSSARG00000005960	SF3A1	99	80.654	ENSSMAG00000004275	sf3a1	97	80.261	Scophthalmus_maximus
ENSSARG00000005960	SF3A1	99	83.007	ENSSDUG00000022219	sf3a1	97	83.007	Seriola_dumerili
ENSSARG00000005960	SF3A1	99	83.007	ENSSLDG00000012642	sf3a1	97	83.007	Seriola_lalandi_dorsalis
ENSSARG00000005960	SF3A1	99	89.119	ENSSPUG00000018863	SF3A1	97	89.911	Sphenodon_punctatus
ENSSARG00000005960	SF3A1	100	82.817	ENSSPAG00000011856	sf3a1	98	82.687	Stegastes_partitus
ENSSARG00000005960	SF3A1	100	95.725	ENSSSCG00000010002	SF3A1	97	95.725	Sus_scrofa
ENSSARG00000005960	SF3A1	98	90.897	ENSTGUG00000010547	SF3A1	99	91.004	Taeniopygia_guttata
ENSSARG00000005960	SF3A1	99	80.131	ENSTRUG00000006118	sf3a1	97	79.739	Takifugu_rubripes
ENSSARG00000005960	SF3A1	65	71.747	ENSTNIG00000005713	sf3a1	89	86.607	Tetraodon_nigroviridis
ENSSARG00000005960	SF3A1	100	88.083	ENSTBEG00000012771	SF3A1	97	88.083	Tupaia_belangeri
ENSSARG00000005960	SF3A1	100	94.955	ENSTTRG00000001535	SF3A1	97	95.343	Tursiops_truncatus
ENSSARG00000005960	SF3A1	99	94.909	ENSUAMG00000006750	SF3A1	96	94.909	Ursus_americanus
ENSSARG00000005960	SF3A1	100	95.725	ENSUMAG00000016665	SF3A1	98	95.725	Ursus_maritimus
ENSSARG00000005960	SF3A1	100	95.596	ENSVVUG00000003075	SF3A1	97	95.596	Vulpes_vulpes
ENSSARG00000005960	SF3A1	98	84.625	ENSXETG00000016144	sf3a1	96	84.073	Xenopus_tropicalis
ENSSARG00000005960	SF3A1	99	81.961	ENSXCOG00000015653	sf3a1	97	81.438	Xiphophorus_couchianus
ENSSARG00000005960	SF3A1	99	82.092	ENSXMAG00000002753	sf3a1	97	81.569	Xiphophorus_maculatus