EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSSARG00000007262 (Gene tree)
Gene ID
-
Gene Symbol
UPF3A
Alias
HUPF3A|RENT3A|UPF3
Full Name
UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type
protein_coding
Species
Sorex_araneus
Status
putative
Strand
Plus strand
Length
19694 bases
Position
chrGeneScaffold_5492:113-19806
Accession
20332
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSARP00000006592Smg4_UPF3PF03467.158.9e-2512
ENSSARP00000006592Smg4_UPF3PF03467.158.9e-2522
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSART00000007273UPF3A-2011230-ENSSARP00000006592409 (aa)-UPI0001580360
Gene Model
Click here to download ENSSARG00000007262's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSSARG00000007262's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSARG00000007262UPF3A9762.095ENSG00000169062UPF3A7594.286Homo_sapiens
ENSSARG00000007262UPF3A9236.761ENSG00000125351UPF3B7250.000Homo_sapiens
ENSSARG00000007262UPF3A9237.879ENSAPOG00000012775upf3b8538.791Acanthochromis_polyacanthus
ENSSARG00000007262UPF3A9466.067ENSAMEG00000004259UPF3A8567.095Ailuropoda_melanoleuca
ENSSARG00000007262UPF3A9237.852ENSAMEG00000000163UPF3B8139.130Ailuropoda_melanoleuca
ENSSARG00000007262UPF3A9249.606ENSATEG00000005843upf3a7950.656Anabas_testudineus
ENSSARG00000007262UPF3A9359.740ENSACAG00000001540UPF3A9261.818Anolis_carolinensis
ENSSARG00000007262UPF3A9836.019ENSACAG00000003625UPF3B8738.425Anolis_carolinensis
ENSSARG00000007262UPF3A9755.611ENSANAG00000021713UPF3A7594.286Aotus_nancymaae
ENSSARG00000007262UPF3A9237.340ENSANAG00000021894-7349.682Aotus_nancymaae
ENSSARG00000007262UPF3A9236.788ENSANAG00000025598-8136.104Aotus_nancymaae
ENSSARG00000007262UPF3A9248.947ENSAMXG00000002608upf3a8050.263Astyanax_mexicanus
ENSSARG00000007262UPF3A9757.107ENSCJAG00000019102UPF3A7491.429Callithrix_jacchus
ENSSARG00000007262UPF3A9236.667ENSCJAG00000004975UPF3B7349.045Callithrix_jacchus
ENSSARG00000007262UPF3A9238.046ENSCAFG00000018426UPF3B8339.589Canis_familiaris
ENSSARG00000007262UPF3A9462.435ENSCAFG00000006504UPF3A8365.285Canis_familiaris
ENSSARG00000007262UPF3A7573.529ENSCAFG00020004074UPF3B6873.529Canis_lupus_dingo
ENSSARG00000007262UPF3A9462.694ENSCAFG00020014268UPF3A8165.544Canis_lupus_dingo
ENSSARG00000007262UPF3A9362.176ENSCHIG00000008682UPF3A7662.176Capra_hircus
ENSSARG00000007262UPF3A5447.297ENSCHIG00000011454-8132.723Capra_hircus
ENSSARG00000007262UPF3A9235.381ENSCHIG00000018011-8337.469Capra_hircus
ENSSARG00000007262UPF3A9237.949ENSTSYG00000014690UPF3B8537.736Carlito_syrichta
ENSSARG00000007262UPF3A7957.567ENSTSYG00000001918UPF3A8761.890Carlito_syrichta
ENSSARG00000007262UPF3A8555.301ENSCPOG00000006824UPF3A8157.307Cavia_porcellus
ENSSARG00000007262UPF3A9859.057ENSCCAG00000018406UPF3A7591.429Cebus_capucinus
ENSSARG00000007262UPF3A6636.803ENSCCAG00000029813-5834.944Cebus_capucinus
ENSSARG00000007262UPF3A9761.097ENSCATG00000029733UPF3A7494.286Cercocebus_atys
ENSSARG00000007262UPF3A6242.471ENSCATG00000017506UPF3B7349.682Cercocebus_atys
ENSSARG00000007262UPF3A6342.586ENSCLAG00000003260UPF3B8139.231Chinchilla_lanigera
ENSSARG00000007262UPF3A9760.149ENSCSAG00000017388UPF3A8461.881Chlorocebus_sabaeus
ENSSARG00000007262UPF3A6647.122ENSCGRG00001013643-7746.713Cricetulus_griseus_chok1gshd
ENSSARG00000007262UPF3A9236.224ENSCGRG00001006858-8137.437Cricetulus_griseus_chok1gshd
ENSSARG00000007262UPF3A8955.890ENSCGRG00001017387Upf3a8458.630Cricetulus_griseus_chok1gshd
ENSSARG00000007262UPF3A9237.468ENSCGRG00000007627Upf3b9237.186Cricetulus_griseus_crigri
ENSSARG00000007262UPF3A8955.890ENSCGRG00000001468Upf3a8458.630Cricetulus_griseus_crigri
ENSSARG00000007262UPF3A9248.556ENSCSEG00000005106upf3a8049.081Cynoglossus_semilaevis
ENSSARG00000007262UPF3A9239.234ENSCSEG00000002046upf3b8734.389Cynoglossus_semilaevis
ENSSARG00000007262UPF3A9248.021ENSCVAG00000022333upf3a7949.740Cyprinodon_variegatus
ENSSARG00000007262UPF3A5443.043ENSDARG00000000489upf3b8635.802Danio_rerio
ENSSARG00000007262UPF3A8465.507ENSDNOG00000034391UPF3A7868.696Dasypus_novemcinctus
ENSSARG00000007262UPF3A9234.889ENSDNOG00000008665UPF3B8237.376Dasypus_novemcinctus
ENSSARG00000007262UPF3A9236.504ENSDORG00000006077Upf3b8137.468Dipodomys_ordii
ENSSARG00000007262UPF3A9473.385ENSETEG00000010110UPF3A8175.194Echinops_telfairi
ENSSARG00000007262UPF3A9463.496ENSEASG00005021884UPF3A8166.324Equus_asinus_asinus
ENSSARG00000007262UPF3A9238.701ENSEASG00005012919UPF3B8139.221Equus_asinus_asinus
ENSSARG00000007262UPF3A9463.496ENSECAG00000017141UPF3A8166.324Equus_caballus
ENSSARG00000007262UPF3A9238.701ENSECAG00000016947UPF3B8139.221Equus_caballus
ENSSARG00000007262UPF3A9247.792ENSELUG00000011050upf3a8249.364Esox_lucius
ENSSARG00000007262UPF3A6346.097ENSELUG00000020389upf3b8633.493Esox_lucius
ENSSARG00000007262UPF3A9237.245ENSFCAG00000004388UPF3B8139.440Felis_catus
ENSSARG00000007262UPF3A9467.098ENSFCAG00000014602UPF3A7188.571Felis_catus
ENSSARG00000007262UPF3A9237.852ENSFDAG00000018869UPF3B8139.130Fukomys_damarensis
ENSSARG00000007262UPF3A8049.709ENSGMOG00000019615upf3a9950.888Gadus_morhua
ENSSARG00000007262UPF3A5646.888ENSGMOG00000001621upf3b8534.398Gadus_morhua
ENSSARG00000007262UPF3A9249.091ENSGAFG00000021170upf3a7950.130Gambusia_affinis
ENSSARG00000007262UPF3A8049.096ENSGACG00000001972upf3a9949.133Gasterosteus_aculeatus
ENSSARG00000007262UPF3A5643.983ENSGACG00000017435upf3b8635.222Gasterosteus_aculeatus
ENSSARG00000007262UPF3A9936.085ENSGAGG00000001219UPF3B9038.824Gopherus_agassizii
ENSSARG00000007262UPF3A9754.975ENSGGOG00000043074-7694.286Gorilla_gorilla
ENSSARG00000007262UPF3A9761.845ENSGGOG00000015428UPF3A7594.286Gorilla_gorilla
ENSSARG00000007262UPF3A9236.761ENSGGOG00000023995UPF3B8139.130Gorilla_gorilla
ENSSARG00000007262UPF3A9754.975ENSGGOG00000041219-8094.286Gorilla_gorilla
ENSSARG00000007262UPF3A7959.259ENSHGLG00000001544UPF3A7458.025Heterocephalus_glaber_female
ENSSARG00000007262UPF3A6737.143ENSHGLG00000011189-8136.657Heterocephalus_glaber_female
ENSSARG00000007262UPF3A9237.084ENSHGLG00000019582-8138.619Heterocephalus_glaber_female
ENSSARG00000007262UPF3A7959.259ENSHGLG00100013244UPF3A7458.025Heterocephalus_glaber_male
ENSSARG00000007262UPF3A9237.076ENSHGLG00100002042-8139.062Heterocephalus_glaber_male
ENSSARG00000007262UPF3A6737.143ENSHGLG00100001889-8136.499Heterocephalus_glaber_male
ENSSARG00000007262UPF3A9238.791ENSHCOG00000017004upf3b8437.186Hippocampus_comes
ENSSARG00000007262UPF3A9242.287ENSHCOG00000013985upf3a7946.684Hippocampus_comes
ENSSARG00000007262UPF3A9249.869ENSIPUG00000023450upf3a8051.181Ictalurus_punctatus
ENSSARG00000007262UPF3A5446.552ENSIPUG00000019249upf3b8537.531Ictalurus_punctatus
ENSSARG00000007262UPF3A6840.909ENSSTOG00000001101UPF3B8138.718Ictidomys_tridecemlineatus
ENSSARG00000007262UPF3A9238.776ENSJJAG00000000053Upf3b8139.949Jaculus_jaculus
ENSSARG00000007262UPF3A9247.781ENSKMAG00000004381upf3a7949.086Kryptolebias_marmoratus
ENSSARG00000007262UPF3A5647.934ENSLBEG00000028689upf3b5238.912Labrus_bergylta
ENSSARG00000007262UPF3A7346.951ENSLACG00000006645UPF3A7882.143Latimeria_chalumnae
ENSSARG00000007262UPF3A5551.695ENSLOCG00000015238upf3b8537.789Lepisosteus_oculatus
ENSSARG00000007262UPF3A9250.529ENSLOCG00000002665upf3a8351.554Lepisosteus_oculatus
ENSSARG00000007262UPF3A9452.709ENSLAFG00000023358UPF3A9451.372Loxodonta_africana
ENSSARG00000007262UPF3A9237.596ENSLAFG00000001267UPF3B8139.130Loxodonta_africana
ENSSARG00000007262UPF3A9759.850ENSMFAG00000045016UPF3A8461.347Macaca_fascicularis
ENSSARG00000007262UPF3A6242.471ENSMFAG00000045414UPF3B7349.682Macaca_fascicularis
ENSSARG00000007262UPF3A6242.471ENSMMUG00000020222UPF3B7349.682Macaca_mulatta
ENSSARG00000007262UPF3A9263.228ENSMMUG00000007449UPF3A7794.286Macaca_mulatta
ENSSARG00000007262UPF3A6242.471ENSMNEG00000039794UPF3B7349.682Macaca_nemestrina
ENSSARG00000007262UPF3A9761.347ENSMNEG00000036402UPF3A7294.286Macaca_nemestrina
ENSSARG00000007262UPF3A6242.471ENSMLEG00000010999UPF3B7349.682Mandrillus_leucophaeus
ENSSARG00000007262UPF3A9760.848ENSMLEG00000014726UPF3A8894.286Mandrillus_leucophaeus
ENSSARG00000007262UPF3A9247.250ENSMAMG00000018364upf3a8048.500Mastacembelus_armatus
ENSSARG00000007262UPF3A8760.674ENSMGAG00000014837UPF3A8961.517Meleagris_gallopavo
ENSSARG00000007262UPF3A9236.667ENSMAUG00000008705Upf3b8137.436Mesocricetus_auratus
ENSSARG00000007262UPF3A6257.664ENSMOCG00000000550Upf3a7762.044Microtus_ochrogaster
ENSSARG00000007262UPF3A9235.697ENSMOCG00000017893Upf3b8237.284Microtus_ochrogaster
ENSSARG00000007262UPF3A9461.399ENSMODG00000003159UPF3A9062.435Monodelphis_domestica
ENSSARG00000007262UPF3A9240.100ENSMODG00000010232UPF3B9238.750Monodelphis_domestica
ENSSARG00000007262UPF3A9237.245MGP_CAROLIEiJ_G0032999Upf3b8138.010Mus_caroli
ENSSARG00000007262UPF3A8954.247MGP_CAROLIEiJ_G0030848Upf3a8357.808Mus_caroli
ENSSARG00000007262UPF3A8955.342ENSMUSG00000038398Upf3a8458.904Mus_musculus
ENSSARG00000007262UPF3A9236.735ENSMUSG00000036572Upf3b8138.010Mus_musculus
ENSSARG00000007262UPF3A8955.616MGP_PahariEiJ_G0021311Upf3a8459.178Mus_pahari
ENSSARG00000007262UPF3A9236.735MGP_PahariEiJ_G0031543Upf3b8137.500Mus_pahari
ENSSARG00000007262UPF3A8955.342MGP_SPRETEiJ_G0031958Upf3a8458.904Mus_spretus
ENSSARG00000007262UPF3A9236.735MGP_SPRETEiJ_G0034152Upf3b8138.010Mus_spretus
ENSSARG00000007262UPF3A9462.532ENSMPUG00000009139UPF3A8065.375Mustela_putorius_furo
ENSSARG00000007262UPF3A6342.205ENSMPUG00000001531UPF3B8339.332Mustela_putorius_furo
ENSSARG00000007262UPF3A9237.596ENSMLUG00000010821UPF3B8139.130Myotis_lucifugus
ENSSARG00000007262UPF3A9664.589ENSMLUG00000015905UPF3A9465.586Myotis_lucifugus
ENSSARG00000007262UPF3A8961.918ENSNGAG00000019314Upf3a8460.822Nannospalax_galili
ENSSARG00000007262UPF3A9236.504ENSNLEG00000014897UPF3B8138.875Nomascus_leucogenys
ENSSARG00000007262UPF3A9761.347ENSNLEG00000007563UPF3A7591.429Nomascus_leucogenys
ENSSARG00000007262UPF3A5960.816ENSOPRG00000008846-5667.347Ochotona_princeps
ENSSARG00000007262UPF3A9248.042ENSONIG00000006817upf3a7949.347Oreochromis_niloticus
ENSSARG00000007262UPF3A8953.117ENSOANG00000006985-8591.176Ornithorhynchus_anatinus
ENSSARG00000007262UPF3A9235.381ENSOCUG00000010213UPF3B8237.221Oryctolagus_cuniculus
ENSSARG00000007262UPF3A9250.000ENSOCUG00000008450UPF3A7849.086Oryctolagus_cuniculus
ENSSARG00000007262UPF3A9247.656ENSORLG00000010911upf3a7949.219Oryzias_latipes
ENSSARG00000007262UPF3A9433.750ENSORLG00000001026upf3b8634.577Oryzias_latipes
ENSSARG00000007262UPF3A9433.750ENSORLG00020003758upf3b8634.577Oryzias_latipes_hni
ENSSARG00000007262UPF3A9248.177ENSORLG00020014317upf3a7948.698Oryzias_latipes_hni
ENSSARG00000007262UPF3A9234.184ENSORLG00015012954upf3b8634.328Oryzias_latipes_hsok
ENSSARG00000007262UPF3A9247.917ENSOMEG00000014425upf3a7949.479Oryzias_melastigma
ENSSARG00000007262UPF3A9236.504ENSOGAG00000004643-8139.386Otolemur_garnettii
ENSSARG00000007262UPF3A6738.571ENSOGAG00000033003-8337.245Otolemur_garnettii
ENSSARG00000007262UPF3A8060.671ENSOGAG00000004788UPF3A7963.415Otolemur_garnettii
ENSSARG00000007262UPF3A9365.274ENSOARG00000009004UPF3A8165.274Ovis_aries
ENSSARG00000007262UPF3A9239.050ENSOARG00000007869-8938.259Ovis_aries
ENSSARG00000007262UPF3A9759.352ENSPPAG00000042267UPF3A8462.594Pan_paniscus
ENSSARG00000007262UPF3A9236.761ENSPPAG00000040390UPF3B8139.130Pan_paniscus
ENSSARG00000007262UPF3A9467.098ENSPPRG00000025062UPF3A7488.571Panthera_pardus
ENSSARG00000007262UPF3A9238.205ENSPPRG00000023536UPF3B8139.642Panthera_pardus
ENSSARG00000007262UPF3A6641.155ENSPTIG00000015264UPF3B8238.272Panthera_tigris_altaica
ENSSARG00000007262UPF3A9759.352ENSPTRG00000006073UPF3A7594.286Pan_troglodytes
ENSSARG00000007262UPF3A9752.985ENSPTRG00000041835-8091.429Pan_troglodytes
ENSSARG00000007262UPF3A9236.761ENSPTRG00000022228UPF3B8139.130Pan_troglodytes
ENSSARG00000007262UPF3A9753.731ENSPTRG00000041187-8191.429Pan_troglodytes
ENSSARG00000007262UPF3A9753.234ENSPTRG00000051640-8091.429Pan_troglodytes
ENSSARG00000007262UPF3A9761.097ENSPANG00000004346UPF3A7494.286Papio_anubis
ENSSARG00000007262UPF3A6242.471ENSPANG00000000900UPF3B7349.682Papio_anubis
ENSSARG00000007262UPF3A9445.652ENSPKIG00000004422upf3a6879.412Paramormyrops_kingsleyae
ENSSARG00000007262UPF3A9442.327ENSPKIG00000019226upf3b8640.931Paramormyrops_kingsleyae
ENSSARG00000007262UPF3A9460.881ENSPSIG00000007468UPF3A9461.917Pelodiscus_sinensis
ENSSARG00000007262UPF3A8955.616ENSPEMG00000019968-8459.452Peromyscus_maniculatus_bairdii
ENSSARG00000007262UPF3A9236.524ENSPEMG00000012352Upf3b8137.531Peromyscus_maniculatus_bairdii
ENSSARG00000007262UPF3A9239.541ENSPCIG00000028914UPF3B8238.889Phascolarctos_cinereus
ENSSARG00000007262UPF3A7464.130ENSPCIG00000019590-6869.182Phascolarctos_cinereus
ENSSARG00000007262UPF3A9250.000ENSPFOG00000013222upf3a7950.392Poecilia_formosa
ENSSARG00000007262UPF3A9234.264ENSPLAG00000005105upf3b8637.406Poecilia_latipinna
ENSSARG00000007262UPF3A9234.264ENSPLAG00000019922upf3b8637.406Poecilia_latipinna
ENSSARG00000007262UPF3A9248.958ENSPLAG00000011960upf3a8050.260Poecilia_latipinna
ENSSARG00000007262UPF3A9247.739ENSPMEG00000000836upf3a8048.744Poecilia_mexicana
ENSSARG00000007262UPF3A9234.264ENSPMEG00000023532upf3b8637.406Poecilia_mexicana
ENSSARG00000007262UPF3A9761.845ENSPPYG00000005536UPF3A8463.342Pongo_abelii
ENSSARG00000007262UPF3A6578.947ENSPCAG00000013124UPF3A5683.083Procavia_capensis
ENSSARG00000007262UPF3A9237.340ENSPCOG00000021960UPF3B8139.386Propithecus_coquereli
ENSSARG00000007262UPF3A6834.983ENSPVAG00000014075UPF3B7334.262Pteropus_vampyrus
ENSSARG00000007262UPF3A9962.069ENSPVAG00000005656UPF3A8464.778Pteropus_vampyrus
ENSSARG00000007262UPF3A9247.781ENSPNAG00000019532upf3a8049.223Pygocentrus_nattereri
ENSSARG00000007262UPF3A6142.586ENSPNAG00000021528upf3b8735.437Pygocentrus_nattereri
ENSSARG00000007262UPF3A8256.677ENSRNOG00000017397Upf3a7961.027Rattus_norvegicus
ENSSARG00000007262UPF3A9236.224ENSRNOG00000039994Upf3b8137.121Rattus_norvegicus
ENSSARG00000007262UPF3A9760.848ENSRBIG00000034007UPF3A8094.286Rhinopithecus_bieti
ENSSARG00000007262UPF3A9236.761ENSRROG00000041031UPF3B7349.682Rhinopithecus_roxellana
ENSSARG00000007262UPF3A9761.347ENSRROG00000012212UPF3A7494.286Rhinopithecus_roxellana
ENSSARG00000007262UPF3A8061.398ENSSBOG00000029989UPF3A7565.350Saimiri_boliviensis_boliviensis
ENSSARG00000007262UPF3A9237.084ENSSBOG00000019740UPF3B7450.323Saimiri_boliviensis_boliviensis
ENSSARG00000007262UPF3A9461.917ENSSHAG00000009895UPF3A9262.953Sarcophilus_harrisii
ENSSARG00000007262UPF3A9940.141ENSSHAG00000008634UPF3B8738.732Sarcophilus_harrisii
ENSSARG00000007262UPF3A5643.983ENSSFOG00015005614upf3b8637.817Scleropages_formosus
ENSSARG00000007262UPF3A9246.296ENSSFOG00015021851upf3a7947.884Scleropages_formosus
ENSSARG00000007262UPF3A5650.206ENSSMAG00000012913upf3b8636.139Scophthalmus_maximus
ENSSARG00000007262UPF3A9240.476ENSSDUG00000009680upf3a8046.970Seriola_dumerili
ENSSARG00000007262UPF3A9735.012ENSSPUG00000013082UPF3B8637.089Sphenodon_punctatus
ENSSARG00000007262UPF3A5451.282ENSSPAG00000009989upf3b8637.778Stegastes_partitus
ENSSARG00000007262UPF3A9237.179ENSSSCG00000012617UPF3B8138.718Sus_scrofa
ENSSARG00000007262UPF3A9463.753ENSSSCG00000024679UPF3A6885.714Sus_scrofa
ENSSARG00000007262UPF3A9836.667ENSTGUG00000003413UPF3B9537.890Taeniopygia_guttata
ENSSARG00000007262UPF3A9261.155ENSTGUG00000009493UPF3A9761.942Taeniopygia_guttata
ENSSARG00000007262UPF3A9246.354ENSTRUG00000012730upf3a8046.615Takifugu_rubripes
ENSSARG00000007262UPF3A9243.490ENSTNIG00000014973upf3a9542.969Tetraodon_nigroviridis
ENSSARG00000007262UPF3A6757.609ENSTBEG00000017186-8756.318Tupaia_belangeri
ENSSARG00000007262UPF3A7568.065ENSTTRG00000015414UPF3A6568.065Tursiops_truncatus
ENSSARG00000007262UPF3A9237.984ENSUAMG00000024565UPF3B8137.984Ursus_americanus
ENSSARG00000007262UPF3A9237.306ENSUMAG00000002150UPF3B8237.306Ursus_maritimus
ENSSARG00000007262UPF3A8732.902ENSVPAG00000009971UPF3B9134.817Vicugna_pacos
ENSSARG00000007262UPF3A9764.179ENSVPAG00000003525UPF3A9864.925Vicugna_pacos
ENSSARG00000007262UPF3A9460.881ENSVVUG00000013538UPF3A7863.472Vulpes_vulpes
ENSSARG00000007262UPF3A9237.403ENSVVUG00000011594UPF3B7349.682Vulpes_vulpes
ENSSARG00000007262UPF3A9237.629ENSXETG00000007440upf3b8637.629Xenopus_tropicalis
ENSSARG00000007262UPF3A9249.077ENSXETG00000002572upf3a8747.619Xenopus_tropicalis
ENSSARG00000007262UPF3A9248.958ENSXMAG00000013452upf3a7950.260Xiphophorus_maculatus
ENSSARG00000007262UPF3A9234.264ENSXMAG00000013680upf3b8539.141Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us