EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSARG00000008615 (Gene tree)
Gene ID: -
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Sorex_araneus
Status: putative
Strand: Minus strand
Length: 71415 bases
Position: chrGeneScaffold_6200:646-72060
Accession: 17854
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSARP00000007792	Upf2	PF04050.14	3.4e-33	1	1
ENSSARP00000007792	MIF4G	PF02854.19	7e-77	1	3
ENSSARP00000007792	MIF4G	PF02854.19	7e-77	2	3
ENSSARP00000007792	MIF4G	PF02854.19	7e-77	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSART00000008614	UPF2-201	3816	-	ENSSARP00000007792	1271 (aa)	-	UPI000158178B

Gene Model

Click here to download ENSSARG00000008615's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSARG00000008615's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSARG00000008615	UPF2	100	95.362	ENSG00000151461	UPF2	100	95.362	Homo_sapiens
ENSSARG00000008615	UPF2	99	77.760	ENSAPOG00000015837	UPF2	100	77.447	Acanthochromis_polyacanthus
ENSSARG00000008615	UPF2	100	96.459	ENSAMEG00000004586	UPF2	100	96.459	Ailuropoda_melanoleuca
ENSSARG00000008615	UPF2	99	81.733	ENSACIG00000018078	UPF2	100	81.499	Amphilophus_citrinellus
ENSSARG00000008615	UPF2	100	81.825	ENSAOCG00000016766	UPF2	100	81.747	Amphiprion_ocellaris
ENSSARG00000008615	UPF2	100	81.903	ENSAPEG00000019084	UPF2	100	81.825	Amphiprion_percula
ENSSARG00000008615	UPF2	100	81.804	ENSATEG00000021677	UPF2	99	81.698	Anabas_testudineus
ENSSARG00000008615	UPF2	100	85.928	ENSAPLG00000010287	UPF2	91	89.819	Anas_platyrhynchos
ENSSARG00000008615	UPF2	100	90.637	ENSACAG00000009259	UPF2	100	90.637	Anolis_carolinensis
ENSSARG00000008615	UPF2	99	87.186	ENSANAG00000028451	UPF2	99	87.186	Aotus_nancymaae
ENSSARG00000008615	UPF2	100	80.125	ENSACLG00000012696	UPF2	100	79.813	Astatotilapia_calliptera
ENSSARG00000008615	UPF2	99	82.003	ENSAMXG00000013700	UPF2	99	82.394	Astyanax_mexicanus
ENSSARG00000008615	UPF2	100	96.145	ENSBTAG00000000288	UPF2	100	96.145	Bos_taurus
ENSSARG00000008615	UPF2	100	94.886	ENSCJAG00000020685	UPF2	100	94.104	Callithrix_jacchus
ENSSARG00000008615	UPF2	100	96.302	ENSCAFG00000004839	UPF2	100	96.302	Canis_familiaris
ENSSARG00000008615	UPF2	96	99.015	ENSCAFG00020005882	UPF2	98	95.945	Canis_lupus_dingo
ENSSARG00000008615	UPF2	100	96.223	ENSCHIG00000020359	UPF2	100	96.223	Capra_hircus
ENSSARG00000008615	UPF2	100	95.279	ENSTSYG00000000935	UPF2	97	99.432	Carlito_syrichta
ENSSARG00000008615	UPF2	91	85.112	ENSCAPG00000016658	UPF2	95	84.648	Cavia_aperea
ENSSARG00000008615	UPF2	99	93.423	ENSCPOG00000008809	UPF2	100	91.838	Cavia_porcellus
ENSSARG00000008615	UPF2	100	87.805	ENSCCAG00000035991	UPF2	100	88.758	Cebus_capucinus
ENSSARG00000008615	UPF2	100	95.519	ENSCATG00000032679	UPF2	100	95.519	Cercocebus_atys
ENSSARG00000008615	UPF2	100	95.358	ENSCLAG00000011434	UPF2	100	93.784	Chinchilla_lanigera
ENSSARG00000008615	UPF2	100	95.597	ENSCSAG00000013372	UPF2	100	95.597	Chlorocebus_sabaeus
ENSSARG00000008615	UPF2	87	98.884	ENSCHOG00000000422	UPF2	89	98.884	Choloepus_hoffmanni
ENSSARG00000008615	UPF2	99	91.095	ENSCPBG00000027823	UPF2	100	91.095	Chrysemys_picta_bellii
ENSSARG00000008615	UPF2	79	48.625	ENSCSAVG00000007772	-	99	46.927	Ciona_savignyi
ENSSARG00000008615	UPF2	99	89.297	ENSCANG00000040396	UPF2	100	89.851	Colobus_angolensis_palliatus
ENSSARG00000008615	UPF2	100	95.279	ENSCGRG00001019347	Upf2	100	95.594	Cricetulus_griseus_chok1gshd
ENSSARG00000008615	UPF2	100	95.279	ENSCGRG00000017993	Upf2	100	95.594	Cricetulus_griseus_crigri
ENSSARG00000008615	UPF2	91	80.000	ENSCSEG00000003520	UPF2	99	75.808	Cynoglossus_semilaevis
ENSSARG00000008615	UPF2	99	81.932	ENSCVAG00000006167	UPF2	100	81.275	Cyprinodon_variegatus
ENSSARG00000008615	UPF2	100	95.987	ENSDNOG00000018160	UPF2	100	95.987	Dasypus_novemcinctus
ENSSARG00000008615	UPF2	100	95.043	ENSDORG00000002478	Upf2	100	95.358	Dipodomys_ordii
ENSSARG00000008615	UPF2	89	35.638	FBgn0029992	Upf2	82	43.860	Drosophila_melanogaster
ENSSARG00000008615	UPF2	72	100.000	ENSETEG00000011583	-	66	100.000	Echinops_telfairi
ENSSARG00000008615	UPF2	69	67.910	ENSEBUG00000012448	-	87	71.812	Eptatretus_burgeri
ENSSARG00000008615	UPF2	100	94.650	ENSEASG00005019274	UPF2	100	96.605	Equus_asinus_asinus
ENSSARG00000008615	UPF2	100	96.223	ENSECAG00000017022	UPF2	100	96.223	Equus_caballus
ENSSARG00000008615	UPF2	77	92.971	ENSEEUG00000007819	UPF2	76	92.971	Erinaceus_europaeus
ENSSARG00000008615	UPF2	99	81.314	ENSELUG00000012014	UPF2	100	81.352	Esox_lucius
ENSSARG00000008615	UPF2	100	98.895	ENSFCAG00000005785	UPF2	100	96.302	Felis_catus
ENSSARG00000008615	UPF2	100	91.739	ENSFALG00000001889	UPF2	98	91.739	Ficedula_albicollis
ENSSARG00000008615	UPF2	100	94.729	ENSFDAG00000014348	UPF2	100	93.548	Fukomys_damarensis
ENSSARG00000008615	UPF2	99	81.983	ENSFHEG00000009826	UPF2	100	79.465	Fundulus_heteroclitus
ENSSARG00000008615	UPF2	91	82.124	ENSGMOG00000005557	UPF2	100	76.887	Gadus_morhua
ENSSARG00000008615	UPF2	100	92.374	ENSGALG00000033772	UPF2	100	92.374	Gallus_gallus
ENSSARG00000008615	UPF2	100	81.279	ENSGAFG00000020867	UPF2	100	79.017	Gambusia_affinis
ENSSARG00000008615	UPF2	90	82.788	ENSGACG00000001080	UPF2	100	80.793	Gasterosteus_aculeatus
ENSSARG00000008615	UPF2	100	91.424	ENSGAGG00000002700	UPF2	100	91.424	Gopherus_agassizii
ENSSARG00000008615	UPF2	100	95.362	ENSGGOG00000001479	UPF2	100	95.362	Gorilla_gorilla
ENSSARG00000008615	UPF2	100	79.969	ENSHBUG00000004249	UPF2	100	81.733	Haplochromis_burtoni
ENSSARG00000008615	UPF2	100	95.358	ENSHGLG00000015176	-	100	93.863	Heterocephalus_glaber_female
ENSSARG00000008615	UPF2	99	84.488	ENSHGLG00000003822	-	99	83.228	Heterocephalus_glaber_female
ENSSARG00000008615	UPF2	99	92.435	ENSHGLG00100010036	UPF2	100	91.017	Heterocephalus_glaber_male
ENSSARG00000008615	UPF2	100	80.124	ENSHCOG00000004025	UPF2	99	78.261	Hippocampus_comes
ENSSARG00000008615	UPF2	100	80.733	ENSIPUG00000015524	UPF2	100	81.343	Ictalurus_punctatus
ENSSARG00000008615	UPF2	100	95.515	ENSSTOG00000013075	UPF2	100	95.830	Ictidomys_tridecemlineatus
ENSSARG00000008615	UPF2	100	93.863	ENSJJAG00000004913	Upf2	100	93.863	Jaculus_jaculus
ENSSARG00000008615	UPF2	92	83.206	ENSKMAG00000001071	UPF2	100	80.751	Kryptolebias_marmoratus
ENSSARG00000008615	UPF2	91	84.099	ENSLBEG00000016394	-	99	81.924	Labrus_bergylta
ENSSARG00000008615	UPF2	71	84.123	ENSLBEG00000000728	-	93	81.311	Labrus_bergylta
ENSSARG00000008615	UPF2	99	78.605	ENSLACG00000015945	UPF2	100	78.605	Latimeria_chalumnae
ENSSARG00000008615	UPF2	99	84.736	ENSLOCG00000015698	UPF2	100	84.815	Lepisosteus_oculatus
ENSSARG00000008615	UPF2	100	95.440	ENSMFAG00000043865	UPF2	100	95.440	Macaca_fascicularis
ENSSARG00000008615	UPF2	100	95.440	ENSMMUG00000008241	UPF2	100	95.440	Macaca_mulatta
ENSSARG00000008615	UPF2	81	94.634	ENSMNEG00000008062	UPF2	99	94.907	Macaca_nemestrina
ENSSARG00000008615	UPF2	95	97.590	ENSMLEG00000036120	UPF2	100	97.826	Mandrillus_leucophaeus
ENSSARG00000008615	UPF2	100	80.808	ENSMAMG00000018276	UPF2	100	81.401	Mastacembelus_armatus
ENSSARG00000008615	UPF2	100	80.125	ENSMZEG00005021595	UPF2	100	79.813	Maylandia_zebra
ENSSARG00000008615	UPF2	99	92.211	ENSMGAG00000004573	UPF2	99	92.211	Meleagris_gallopavo
ENSSARG00000008615	UPF2	100	93.312	ENSMAUG00000016512	Upf2	100	93.312	Mesocricetus_auratus
ENSSARG00000008615	UPF2	95	98.980	ENSMICG00000001716	UPF2	100	91.805	Microcebus_murinus
ENSSARG00000008615	UPF2	100	94.099	ENSMOCG00000008263	Upf2	100	92.998	Microtus_ochrogaster
ENSSARG00000008615	UPF2	90	82.087	ENSMMOG00000006528	UPF2	100	79.577	Mola_mola
ENSSARG00000008615	UPF2	100	94.178	ENSMODG00000016794	UPF2	100	94.178	Monodelphis_domestica
ENSSARG00000008615	UPF2	99	81.216	ENSMALG00000002663	UPF2	100	79.264	Monopterus_albus
ENSSARG00000008615	UPF2	100	94.650	MGP_CAROLIEiJ_G0023157	Upf2	100	96.762	Mus_caroli
ENSSARG00000008615	UPF2	100	94.571	ENSMUSG00000043241	Upf2	99	96.190	Mus_musculus
ENSSARG00000008615	UPF2	100	94.729	MGP_PahariEiJ_G0019217	Upf2	100	95.810	Mus_pahari
ENSSARG00000008615	UPF2	100	94.807	MGP_SPRETEiJ_G0024075	Upf2	100	96.190	Mus_spretus
ENSSARG00000008615	UPF2	100	96.381	ENSMPUG00000001064	UPF2	100	96.381	Mustela_putorius_furo
ENSSARG00000008615	UPF2	99	95.287	ENSMLUG00000000228	UPF2	100	95.208	Myotis_lucifugus
ENSSARG00000008615	UPF2	100	80.125	ENSNBRG00000013629	UPF2	100	81.761	Neolamprologus_brichardi
ENSSARG00000008615	UPF2	100	95.362	ENSNLEG00000012058	UPF2	100	95.362	Nomascus_leucogenys
ENSSARG00000008615	UPF2	52	100.000	ENSMEUG00000002180	-	58	100.000	Notamacropus_eugenii
ENSSARG00000008615	UPF2	76	100.000	ENSOPRG00000006801	-	82	100.000	Ochotona_princeps
ENSSARG00000008615	UPF2	100	94.807	ENSODEG00000001290	UPF2	100	93.234	Octodon_degus
ENSSARG00000008615	UPF2	100	80.203	ENSONIG00000017991	UPF2	100	81.839	Oreochromis_niloticus
ENSSARG00000008615	UPF2	99	94.201	ENSOCUG00000006230	UPF2	100	93.652	Oryctolagus_cuniculus
ENSSARG00000008615	UPF2	100	80.623	ENSORLG00000017189	UPF2	100	78.861	Oryzias_latipes
ENSSARG00000008615	UPF2	100	80.623	ENSORLG00020005969	UPF2	100	78.861	Oryzias_latipes_hni
ENSSARG00000008615	UPF2	100	80.623	ENSORLG00015005713	UPF2	100	78.861	Oryzias_latipes_hsok
ENSSARG00000008615	UPF2	99	78.003	ENSOMEG00000023420	UPF2	98	75.997	Oryzias_melastigma
ENSSARG00000008615	UPF2	100	95.515	ENSOGAG00000005796	UPF2	100	95.515	Otolemur_garnettii
ENSSARG00000008615	UPF2	100	96.072	ENSOARG00000014587	UPF2	100	96.072	Ovis_aries
ENSSARG00000008615	UPF2	99	91.556	ENSPPAG00000037953	UPF2	100	92.205	Pan_paniscus
ENSSARG00000008615	UPF2	100	96.302	ENSPPRG00000000690	UPF2	100	96.302	Panthera_pardus
ENSSARG00000008615	UPF2	100	96.302	ENSPTIG00000008867	UPF2	100	96.302	Panthera_tigris_altaica
ENSSARG00000008615	UPF2	100	95.362	ENSPTRG00000002291	UPF2	100	95.362	Pan_troglodytes
ENSSARG00000008615	UPF2	100	95.519	ENSPANG00000023399	UPF2	100	95.519	Papio_anubis
ENSSARG00000008615	UPF2	100	81.201	ENSPKIG00000025502	UPF2	100	81.123	Paramormyrops_kingsleyae
ENSSARG00000008615	UPF2	59	89.907	ENSPSIG00000015158	UPF2	95	89.907	Pelodiscus_sinensis
ENSSARG00000008615	UPF2	99	79.576	ENSPMGG00000005259	UPF2	100	80.063	Periophthalmus_magnuspinnatus
ENSSARG00000008615	UPF2	93	93.878	ENSPEMG00000015731	Upf2	99	93.878	Peromyscus_maniculatus_bairdii
ENSSARG00000008615	UPF2	100	93.784	ENSPCIG00000006656	UPF2	100	93.784	Phascolarctos_cinereus
ENSSARG00000008615	UPF2	100	81.357	ENSPFOG00000017118	UPF2	100	79.095	Poecilia_formosa
ENSSARG00000008615	UPF2	100	81.357	ENSPLAG00000005094	UPF2	100	79.095	Poecilia_latipinna
ENSSARG00000008615	UPF2	100	81.357	ENSPMEG00000017009	UPF2	100	79.095	Poecilia_mexicana
ENSSARG00000008615	UPF2	99	81.206	ENSPREG00000021880	UPF2	100	79.248	Poecilia_reticulata
ENSSARG00000008615	UPF2	66	96.411	ENSPPYG00000002089	-	100	96.411	Pongo_abelii
ENSSARG00000008615	UPF2	100	81.747	ENSPCAG00000000684	UPF2	100	81.747	Procavia_capensis
ENSSARG00000008615	UPF2	99	92.829	ENSPCOG00000021656	UPF2	100	92.829	Propithecus_coquereli
ENSSARG00000008615	UPF2	100	88.365	ENSPVAG00000017286	UPF2	100	88.365	Pteropus_vampyrus
ENSSARG00000008615	UPF2	99	77.674	ENSPNYG00000017096	UPF2	100	79.313	Pundamilia_nyererei
ENSSARG00000008615	UPF2	100	82.215	ENSPNAG00000009357	UPF2	100	82.761	Pygocentrus_nattereri
ENSSARG00000008615	UPF2	99	89.238	ENSRNOG00000023593	Upf2	100	98.889	Rattus_norvegicus
ENSSARG00000008615	UPF2	99	94.090	ENSRBIG00000037780	UPF2	100	94.405	Rhinopithecus_bieti
ENSSARG00000008615	UPF2	100	94.969	ENSRROG00000043547	UPF2	100	95.283	Rhinopithecus_roxellana
ENSSARG00000008615	UPF2	100	94.178	ENSSBOG00000020012	UPF2	100	93.868	Saimiri_boliviensis_boliviensis
ENSSARG00000008615	UPF2	100	80.638	ENSSFOG00015023788	upf2	100	80.482	Scleropages_formosus
ENSSARG00000008615	UPF2	90	82.047	ENSSMAG00000007637	UPF2	100	78.251	Scophthalmus_maximus
ENSSARG00000008615	UPF2	100	81.981	ENSSDUG00000017244	UPF2	99	81.825	Seriola_dumerili
ENSSARG00000008615	UPF2	99	80.423	ENSSLDG00000016866	UPF2	100	80.031	Seriola_lalandi_dorsalis
ENSSARG00000008615	UPF2	99	88.819	ENSSPUG00000014544	UPF2	99	88.819	Sphenodon_punctatus
ENSSARG00000008615	UPF2	68	96.433	ENSSSCG00000011117	-	100	96.433	Sus_scrofa
ENSSARG00000008615	UPF2	99	91.719	ENSTGUG00000002163	-	100	91.719	Taeniopygia_guttata
ENSSARG00000008615	UPF2	100	81.308	ENSTRUG00000007519	UPF2	99	79.407	Takifugu_rubripes
ENSSARG00000008615	UPF2	100	78.927	ENSTNIG00000004453	UPF2	100	78.660	Tetraodon_nigroviridis
ENSSARG00000008615	UPF2	93	87.892	ENSTBEG00000012679	UPF2	93	88.230	Tupaia_belangeri
ENSSARG00000008615	UPF2	100	95.987	ENSTTRG00000016388	UPF2	100	95.987	Tursiops_truncatus
ENSSARG00000008615	UPF2	92	99.306	ENSUAMG00000023560	UPF2	99	99.306	Ursus_americanus
ENSSARG00000008615	UPF2	100	96.459	ENSUMAG00000012953	UPF2	95	96.459	Ursus_maritimus
ENSSARG00000008615	UPF2	85	96.774	ENSVPAG00000006763	UPF2	86	96.774	Vicugna_pacos
ENSSARG00000008615	UPF2	100	96.223	ENSVVUG00000006166	UPF2	100	96.223	Vulpes_vulpes
ENSSARG00000008615	UPF2	100	81.015	ENSXETG00000033103	UPF2	100	80.352	Xenopus_tropicalis
ENSSARG00000008615	UPF2	99	81.094	ENSXCOG00000011604	UPF2	100	78.906	Xiphophorus_couchianus
ENSSARG00000008615	UPF2	100	81.123	ENSXMAG00000017209	UPF2	100	78.861	Xiphophorus_maculatus