EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSARG00000012416 (Gene tree)
Gene ID: -
Gene Symbol: CPSF4
Alias: CPSF30|NAR
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Sorex_araneus
Status: putative
Strand: Plus strand
Length: 6769 bases
Position: chrGeneScaffold_1508:1752-8520
Accession: 2327
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSARP00000011206	zf-CCCH	PF00642.24	6e-21	1	2
ENSSARP00000011206	zf-CCCH	PF00642.24	6e-21	2	2
ENSSARP00000011206	zf-CCHC	PF00098.23	1.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSART00000012407	CPSF4-201	705	-	ENSSARP00000011206	234 (aa)	-	UPI0001580CBD

Gene Model

Click here to download ENSSARG00000012416's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSARG00000012416's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSARG00000012416	CPSF4	100	99.573	ENSG00000160917	CPSF4	100	100.000	Homo_sapiens
ENSSARG00000012416	CPSF4	77	74.176	ENSAPOG00000004921	cpsf4	100	74.176	Acanthochromis_polyacanthus
ENSSARG00000012416	CPSF4	100	99.573	ENSAMEG00000006252	CPSF4	87	99.573	Ailuropoda_melanoleuca
ENSSARG00000012416	CPSF4	100	77.778	ENSACIG00000009248	cpsf4	85	75.214	Amphilophus_citrinellus
ENSSARG00000012416	CPSF4	100	84.255	ENSAOCG00000019616	cpsf4	87	84.255	Amphiprion_ocellaris
ENSSARG00000012416	CPSF4	100	84.255	ENSAPEG00000011679	cpsf4	87	84.255	Amphiprion_percula
ENSSARG00000012416	CPSF4	100	83.122	ENSATEG00000007010	cpsf4	87	83.122	Anabas_testudineus
ENSSARG00000012416	CPSF4	100	94.017	ENSACAG00000012941	CPSF4	77	94.017	Anolis_carolinensis
ENSSARG00000012416	CPSF4	100	99.573	ENSANAG00000021360	CPSF4	87	99.573	Aotus_nancymaae
ENSSARG00000012416	CPSF4	100	83.404	ENSACLG00000010374	cpsf4	87	83.404	Astatotilapia_calliptera
ENSSARG00000012416	CPSF4	100	84.322	ENSAMXG00000031647	cpsf4	87	85.169	Astyanax_mexicanus
ENSSARG00000012416	CPSF4	100	87.607	ENSBTAG00000002090	CPSF4	86	87.607	Bos_taurus
ENSSARG00000012416	CPSF4	100	99.573	ENSCJAG00000015826	CPSF4	87	99.573	Callithrix_jacchus
ENSSARG00000012416	CPSF4	100	99.145	ENSCAFG00000015036	CPSF4	87	99.145	Canis_familiaris
ENSSARG00000012416	CPSF4	93	99.083	ENSCAFG00020014462	CPSF4	83	99.083	Canis_lupus_dingo
ENSSARG00000012416	CPSF4	100	98.718	ENSCHIG00000014313	CPSF4	87	98.718	Capra_hircus
ENSSARG00000012416	CPSF4	100	81.277	ENSTSYG00000014604	-	86	78.298	Carlito_syrichta
ENSSARG00000012416	CPSF4	100	88.462	ENSTSYG00000005712	-	86	88.462	Carlito_syrichta
ENSSARG00000012416	CPSF4	100	82.553	ENSTSYG00000008195	-	92	79.574	Carlito_syrichta
ENSSARG00000012416	CPSF4	93	99.541	ENSCAPG00000013881	CPSF4	87	99.541	Cavia_aperea
ENSSARG00000012416	CPSF4	100	88.889	ENSCPOG00000001783	CPSF4	86	88.889	Cavia_porcellus
ENSSARG00000012416	CPSF4	100	99.573	ENSCCAG00000028291	CPSF4	87	99.573	Cebus_capucinus
ENSSARG00000012416	CPSF4	100	99.573	ENSCATG00000038440	CPSF4	87	99.573	Cercocebus_atys
ENSSARG00000012416	CPSF4	100	99.573	ENSCLAG00000007050	CPSF4	87	99.573	Chinchilla_lanigera
ENSSARG00000012416	CPSF4	100	99.573	ENSCSAG00000017795	CPSF4	87	99.573	Chlorocebus_sabaeus
ENSSARG00000012416	CPSF4	92	95.370	ENSCPBG00000020869	CPSF4	100	95.370	Chrysemys_picta_bellii
ENSSARG00000012416	CPSF4	56	85.385	ENSCPBG00000010269	-	79	84.733	Chrysemys_picta_bellii
ENSSARG00000012416	CPSF4	96	53.540	ENSCING00000021080	-	84	53.540	Ciona_intestinalis
ENSSARG00000012416	CPSF4	96	51.210	ENSCSAVG00000011469	-	85	50.000	Ciona_savignyi
ENSSARG00000012416	CPSF4	100	99.573	ENSCANG00000019384	CPSF4	87	99.573	Colobus_angolensis_palliatus
ENSSARG00000012416	CPSF4	100	88.889	ENSCGRG00001024184	Cpsf4	86	88.889	Cricetulus_griseus_chok1gshd
ENSSARG00000012416	CPSF4	100	99.573	ENSCGRG00000013892	Cpsf4	87	99.573	Cricetulus_griseus_crigri
ENSSARG00000012416	CPSF4	100	83.404	ENSCSEG00000019055	cpsf4	87	83.404	Cynoglossus_semilaevis
ENSSARG00000012416	CPSF4	100	82.553	ENSCVAG00000016528	cpsf4	87	82.553	Cyprinodon_variegatus
ENSSARG00000012416	CPSF4	100	83.898	ENSDARG00000020217	cpsf4	87	83.898	Danio_rerio
ENSSARG00000012416	CPSF4	100	99.145	ENSDNOG00000006344	CPSF4	87	99.145	Dasypus_novemcinctus
ENSSARG00000012416	CPSF4	93	99.078	ENSDORG00000000742	Cpsf4	100	99.078	Dipodomys_ordii
ENSSARG00000012416	CPSF4	100	56.031	FBgn0015621	Clp	87	55.253	Drosophila_melanogaster
ENSSARG00000012416	CPSF4	65	100.000	ENSETEG00000002608	CPSF4	57	100.000	Echinops_telfairi
ENSSARG00000012416	CPSF4	99	65.517	ENSEBUG00000012552	cpsf4	84	65.517	Eptatretus_burgeri
ENSSARG00000012416	CPSF4	100	88.889	ENSEASG00005002487	CPSF4	86	88.889	Equus_asinus_asinus
ENSSARG00000012416	CPSF4	100	99.573	ENSECAG00000007525	CPSF4	87	99.573	Equus_caballus
ENSSARG00000012416	CPSF4	73	100.000	ENSEEUG00000002158	CPSF4	73	100.000	Erinaceus_europaeus
ENSSARG00000012416	CPSF4	100	81.590	ENSELUG00000011481	cpsf4	87	81.590	Esox_lucius
ENSSARG00000012416	CPSF4	100	99.573	ENSFCAG00000015070	CPSF4	87	99.573	Felis_catus
ENSSARG00000012416	CPSF4	100	85.043	ENSFALG00000013799	CPSF4	86	83.333	Ficedula_albicollis
ENSSARG00000012416	CPSF4	100	99.573	ENSFDAG00000014092	CPSF4	96	99.573	Fukomys_damarensis
ENSSARG00000012416	CPSF4	100	81.702	ENSFHEG00000010880	cpsf4	87	81.702	Fundulus_heteroclitus
ENSSARG00000012416	CPSF4	100	75.847	ENSGMOG00000002330	cpsf4	86	74.153	Gadus_morhua
ENSSARG00000012416	CPSF4	78	38.947	ENSGALG00000004441	-	92	37.895	Gallus_gallus
ENSSARG00000012416	CPSF4	100	84.615	ENSGALG00000004714	CPSF4	86	83.333	Gallus_gallus
ENSSARG00000012416	CPSF4	100	81.702	ENSGAFG00000010580	cpsf4	87	81.702	Gambusia_affinis
ENSSARG00000012416	CPSF4	100	76.695	ENSGACG00000007792	cpsf4	86	75.847	Gasterosteus_aculeatus
ENSSARG00000012416	CPSF4	56	85.385	ENSGAGG00000020579	-	73	85.385	Gopherus_agassizii
ENSSARG00000012416	CPSF4	100	95.299	ENSGAGG00000021835	CPSF4	87	95.299	Gopherus_agassizii
ENSSARG00000012416	CPSF4	100	99.573	ENSGGOG00000015131	CPSF4	87	99.573	Gorilla_gorilla
ENSSARG00000012416	CPSF4	100	83.404	ENSHBUG00000013699	cpsf4	87	83.404	Haplochromis_burtoni
ENSSARG00000012416	CPSF4	100	97.458	ENSHGLG00000017150	CPSF4	87	97.458	Heterocephalus_glaber_female
ENSSARG00000012416	CPSF4	100	95.763	ENSHGLG00100009215	-	100	95.763	Heterocephalus_glaber_male
ENSSARG00000012416	CPSF4	61	64.789	ENSHGLG00100017302	-	79	48.291	Heterocephalus_glaber_male
ENSSARG00000012416	CPSF4	100	79.574	ENSHCOG00000004397	cpsf4	87	79.574	Hippocampus_comes
ENSSARG00000012416	CPSF4	100	83.051	ENSIPUG00000017147	cpsf4	87	84.388	Ictalurus_punctatus
ENSSARG00000012416	CPSF4	100	99.573	ENSSTOG00000001688	CPSF4	87	99.573	Ictidomys_tridecemlineatus
ENSSARG00000012416	CPSF4	100	99.573	ENSJJAG00000019426	Cpsf4	87	99.573	Jaculus_jaculus
ENSSARG00000012416	CPSF4	100	81.277	ENSKMAG00000015642	cpsf4	87	81.277	Kryptolebias_marmoratus
ENSSARG00000012416	CPSF4	100	59.574	ENSLACG00000018470	-	86	59.574	Latimeria_chalumnae
ENSSARG00000012416	CPSF4	100	88.511	ENSLACG00000010938	CPSF4	87	88.511	Latimeria_chalumnae
ENSSARG00000012416	CPSF4	100	88.889	ENSLOCG00000004814	cpsf4	87	88.889	Lepisosteus_oculatus
ENSSARG00000012416	CPSF4	100	99.145	ENSLAFG00000000159	CPSF4	87	99.145	Loxodonta_africana
ENSSARG00000012416	CPSF4	100	99.573	ENSMFAG00000001462	CPSF4	100	87.963	Macaca_fascicularis
ENSSARG00000012416	CPSF4	100	99.573	ENSMMUG00000019191	CPSF4	87	99.573	Macaca_mulatta
ENSSARG00000012416	CPSF4	100	99.573	ENSMNEG00000032306	CPSF4	87	99.573	Macaca_nemestrina
ENSSARG00000012416	CPSF4	100	99.573	ENSMLEG00000034721	CPSF4	87	99.573	Mandrillus_leucophaeus
ENSSARG00000012416	CPSF4	100	82.979	ENSMAMG00000006244	cpsf4	87	82.979	Mastacembelus_armatus
ENSSARG00000012416	CPSF4	100	83.404	ENSMZEG00005007515	cpsf4	87	83.404	Maylandia_zebra
ENSSARG00000012416	CPSF4	100	84.615	ENSMGAG00000004235	CPSF4	99	83.333	Meleagris_gallopavo
ENSSARG00000012416	CPSF4	100	99.573	ENSMAUG00000021253	Cpsf4	87	99.573	Mesocricetus_auratus
ENSSARG00000012416	CPSF4	100	99.573	ENSMICG00000017429	CPSF4	87	99.573	Microcebus_murinus
ENSSARG00000012416	CPSF4	100	99.573	ENSMOCG00000014901	Cpsf4	87	99.573	Microtus_ochrogaster
ENSSARG00000012416	CPSF4	100	83.404	ENSMMOG00000001813	cpsf4	87	83.404	Mola_mola
ENSSARG00000012416	CPSF4	100	97.436	ENSMODG00000001367	CPSF4	87	97.436	Monodelphis_domestica
ENSSARG00000012416	CPSF4	100	81.702	ENSMALG00000012611	cpsf4	87	81.702	Monopterus_albus
ENSSARG00000012416	CPSF4	100	99.573	MGP_CAROLIEiJ_G0028012	Cpsf4	87	99.573	Mus_caroli
ENSSARG00000012416	CPSF4	100	99.573	ENSMUSG00000029625	Cpsf4	87	99.573	Mus_musculus
ENSSARG00000012416	CPSF4	100	99.573	MGP_PahariEiJ_G0024581	Cpsf4	87	99.573	Mus_pahari
ENSSARG00000012416	CPSF4	100	100.000	MGP_SPRETEiJ_G0029013	Cpsf4	87	100.000	Mus_spretus
ENSSARG00000012416	CPSF4	100	99.573	ENSMPUG00000016508	CPSF4	87	99.573	Mustela_putorius_furo
ENSSARG00000012416	CPSF4	100	88.462	ENSMLUG00000010980	CPSF4	99	88.462	Myotis_lucifugus
ENSSARG00000012416	CPSF4	100	99.145	ENSNGAG00000001567	Cpsf4	87	99.145	Nannospalax_galili
ENSSARG00000012416	CPSF4	100	83.404	ENSNBRG00000003943	cpsf4	93	83.404	Neolamprologus_brichardi
ENSSARG00000012416	CPSF4	100	96.154	ENSNLEG00000011074	CPSF4	87	96.154	Nomascus_leucogenys
ENSSARG00000012416	CPSF4	100	97.436	ENSMEUG00000006955	CPSF4	87	97.436	Notamacropus_eugenii
ENSSARG00000012416	CPSF4	100	99.573	ENSOPRG00000013663	CPSF4	87	99.573	Ochotona_princeps
ENSSARG00000012416	CPSF4	94	80.365	ENSODEG00000018283	-	78	77.169	Octodon_degus
ENSSARG00000012416	CPSF4	100	99.573	ENSODEG00000011181	-	87	99.573	Octodon_degus
ENSSARG00000012416	CPSF4	100	73.109	ENSODEG00000009779	-	87	73.109	Octodon_degus
ENSSARG00000012416	CPSF4	100	83.404	ENSONIG00000008495	cpsf4	87	83.404	Oreochromis_niloticus
ENSSARG00000012416	CPSF4	93	56.195	ENSOANG00000009568	-	83	53.540	Ornithorhynchus_anatinus
ENSSARG00000012416	CPSF4	100	96.154	ENSOANG00000007729	CPSF4	99	96.154	Ornithorhynchus_anatinus
ENSSARG00000012416	CPSF4	100	99.145	ENSOCUG00000002437	CPSF4	61	99.145	Oryctolagus_cuniculus
ENSSARG00000012416	CPSF4	100	82.051	ENSORLG00000022798	cpsf4	87	82.051	Oryzias_latipes
ENSSARG00000012416	CPSF4	100	82.051	ENSORLG00020008548	cpsf4	87	82.051	Oryzias_latipes_hni
ENSSARG00000012416	CPSF4	100	82.051	ENSORLG00015019575	cpsf4	87	82.051	Oryzias_latipes_hsok
ENSSARG00000012416	CPSF4	100	80.769	ENSOMEG00000005176	cpsf4	87	80.769	Oryzias_melastigma
ENSSARG00000012416	CPSF4	100	100.000	ENSOGAG00000010884	CPSF4	87	100.000	Otolemur_garnettii
ENSSARG00000012416	CPSF4	100	86.134	ENSOARG00000018668	CPSF4	87	85.714	Ovis_aries
ENSSARG00000012416	CPSF4	100	99.145	ENSPPAG00000043355	CPSF4	87	99.145	Pan_paniscus
ENSSARG00000012416	CPSF4	100	99.573	ENSPPRG00000003134	CPSF4	87	99.573	Panthera_pardus
ENSSARG00000012416	CPSF4	100	99.573	ENSPTIG00000005604	CPSF4	87	99.573	Panthera_tigris_altaica
ENSSARG00000012416	CPSF4	100	99.145	ENSPTRG00000019453	CPSF4	87	99.145	Pan_troglodytes
ENSSARG00000012416	CPSF4	100	99.573	ENSPANG00000023123	CPSF4	87	99.573	Papio_anubis
ENSSARG00000012416	CPSF4	100	83.264	ENSPKIG00000014278	cpsf4	87	83.264	Paramormyrops_kingsleyae
ENSSARG00000012416	CPSF4	93	58.904	ENSPSIG00000018198	-	100	57.798	Pelodiscus_sinensis
ENSSARG00000012416	CPSF4	92	94.907	ENSPSIG00000011229	CPSF4	100	94.907	Pelodiscus_sinensis
ENSSARG00000012416	CPSF4	93	76.147	ENSPMGG00000017735	cpsf4	81	74.771	Periophthalmus_magnuspinnatus
ENSSARG00000012416	CPSF4	100	99.573	ENSPEMG00000004508	Cpsf4	87	99.573	Peromyscus_maniculatus_bairdii
ENSSARG00000012416	CPSF4	100	97.436	ENSPCIG00000024776	CPSF4	87	97.436	Phascolarctos_cinereus
ENSSARG00000012416	CPSF4	100	81.702	ENSPFOG00000014912	cpsf4	87	81.702	Poecilia_formosa
ENSSARG00000012416	CPSF4	100	73.504	ENSPLAG00000009599	cpsf4	86	73.504	Poecilia_latipinna
ENSSARG00000012416	CPSF4	100	81.702	ENSPMEG00000009790	cpsf4	87	81.702	Poecilia_mexicana
ENSSARG00000012416	CPSF4	100	80.851	ENSPREG00000018166	cpsf4	87	78.205	Poecilia_reticulata
ENSSARG00000012416	CPSF4	100	98.718	ENSPPYG00000017378	CPSF4	100	98.718	Pongo_abelii
ENSSARG00000012416	CPSF4	100	98.718	ENSPCAG00000001892	CPSF4	87	98.718	Procavia_capensis
ENSSARG00000012416	CPSF4	100	99.145	ENSPCOG00000012771	CPSF4	87	99.145	Propithecus_coquereli
ENSSARG00000012416	CPSF4	93	99.539	ENSPVAG00000007531	CPSF4	81	99.539	Pteropus_vampyrus
ENSSARG00000012416	CPSF4	100	83.404	ENSPNYG00000018559	cpsf4	87	83.404	Pundamilia_nyererei
ENSSARG00000012416	CPSF4	100	84.746	ENSPNAG00000003736	cpsf4	87	85.593	Pygocentrus_nattereri
ENSSARG00000012416	CPSF4	100	88.462	ENSRNOG00000000985	Cpsf4	86	88.462	Rattus_norvegicus
ENSSARG00000012416	CPSF4	100	99.573	ENSRBIG00000033886	CPSF4	100	99.573	Rhinopithecus_bieti
ENSSARG00000012416	CPSF4	100	88.889	ENSRROG00000040431	CPSF4	86	88.889	Rhinopithecus_roxellana
ENSSARG00000012416	CPSF4	100	99.573	ENSSBOG00000020493	CPSF4	100	87.963	Saimiri_boliviensis_boliviensis
ENSSARG00000012416	CPSF4	100	97.436	ENSSHAG00000011533	CPSF4	87	97.436	Sarcophilus_harrisii
ENSSARG00000012416	CPSF4	100	83.817	ENSSFOG00015007883	cpsf4	87	84.647	Scleropages_formosus
ENSSARG00000012416	CPSF4	100	77.778	ENSSMAG00000006374	cpsf4	86	76.068	Scophthalmus_maximus
ENSSARG00000012416	CPSF4	100	82.553	ENSSDUG00000018887	cpsf4	87	82.553	Seriola_dumerili
ENSSARG00000012416	CPSF4	100	82.553	ENSSLDG00000019078	cpsf4	87	82.553	Seriola_lalandi_dorsalis
ENSSARG00000012416	CPSF4	95	58.667	ENSSPUG00000014803	-	81	58.744	Sphenodon_punctatus
ENSSARG00000012416	CPSF4	100	94.444	ENSSPUG00000003549	CPSF4	87	94.444	Sphenodon_punctatus
ENSSARG00000012416	CPSF4	100	77.778	ENSSPAG00000006174	cpsf4	85	75.214	Stegastes_partitus
ENSSARG00000012416	CPSF4	100	89.316	ENSSSCG00000026896	CPSF4	86	89.316	Sus_scrofa
ENSSARG00000012416	CPSF4	100	83.898	ENSTGUG00000007552	CPSF4	86	82.203	Taeniopygia_guttata
ENSSARG00000012416	CPSF4	100	79.832	ENSTRUG00000024220	cpsf4	87	79.832	Takifugu_rubripes
ENSSARG00000012416	CPSF4	100	78.723	ENSTNIG00000006265	cpsf4	87	80.426	Tetraodon_nigroviridis
ENSSARG00000012416	CPSF4	100	90.171	ENSTBEG00000011406	CPSF4	100	90.171	Tupaia_belangeri
ENSSARG00000012416	CPSF4	100	75.641	ENSTTRG00000003007	CPSF4	87	75.641	Tursiops_truncatus
ENSSARG00000012416	CPSF4	91	87.264	ENSUAMG00000008051	CPSF4	72	87.264	Ursus_americanus
ENSSARG00000012416	CPSF4	100	88.462	ENSUMAG00000009474	CPSF4	86	88.462	Ursus_maritimus
ENSSARG00000012416	CPSF4	100	88.462	ENSVVUG00000008824	CPSF4	86	88.462	Vulpes_vulpes
ENSSARG00000012416	CPSF4	100	88.115	ENSXETG00000009892	cpsf4	87	88.115	Xenopus_tropicalis
ENSSARG00000012416	CPSF4	99	60.944	ENSXETG00000004641	cpsf4l	86	60.944	Xenopus_tropicalis
ENSSARG00000012416	CPSF4	100	81.277	ENSXCOG00000016040	cpsf4	87	81.277	Xiphophorus_couchianus
ENSSARG00000012416	CPSF4	100	81.702	ENSXMAG00000024670	cpsf4	87	81.702	Xiphophorus_maculatus