EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSARG00000012484 (Gene tree)
Gene ID: -
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Sorex_araneus
Status: putative
Strand: Minus strand
Length: 58354 bases
Position: chrGeneScaffold_4725:321-58674
Accession: 24644
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSARP00000011285	EST1	PF10374.9	3.1e-14	1	1
ENSSARP00000011285	EST1_DNA_bind	PF10373.9	1.4e-18	1	2
ENSSARP00000011285	EST1_DNA_bind	PF10373.9	1.4e-18	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSART00000012495	SMG5-201	2745	-	ENSSARP00000011285	915 (aa)	-	UPI0001580C61

Gene Model

Click here to download ENSSARG00000012484's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSARG00000012484's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSARG00000012484	SMG5	100	81.025	ENSG00000198952	SMG5	90	81.025	Homo_sapiens
ENSSARG00000012484	SMG5	94	70.504	ENSAPOG00000019690	smg5	89	59.649	Acanthochromis_polyacanthus
ENSSARG00000012484	SMG5	97	78.747	ENSAMEG00000014458	SMG5	90	78.747	Ailuropoda_melanoleuca
ENSSARG00000012484	SMG5	99	57.962	ENSACIG00000001353	smg5	90	59.318	Amphilophus_citrinellus
ENSSARG00000012484	SMG5	94	70.504	ENSAOCG00000019483	smg5	86	58.583	Amphiprion_ocellaris
ENSSARG00000012484	SMG5	94	70.504	ENSAPEG00000022949	smg5	88	58.693	Amphiprion_percula
ENSSARG00000012484	SMG5	94	70.144	ENSATEG00000005348	smg5	85	70.144	Anabas_testudineus
ENSSARG00000012484	SMG5	97	67.495	ENSAPLG00000010263	SMG5	90	67.171	Anas_platyrhynchos
ENSSARG00000012484	SMG5	51	63.768	ENSACAG00000009162	-	93	66.147	Anolis_carolinensis
ENSSARG00000012484	SMG5	100	80.916	ENSANAG00000032899	SMG5	90	80.916	Aotus_nancymaae
ENSSARG00000012484	SMG5	94	70.863	ENSACLG00000009311	smg5	85	70.863	Astatotilapia_calliptera
ENSSARG00000012484	SMG5	76	69.784	ENSAMXG00000024616	smg5	85	69.784	Astyanax_mexicanus
ENSSARG00000012484	SMG5	100	36.791	ENSBTAG00000021747	-	90	36.043	Bos_taurus
ENSSARG00000012484	SMG5	100	81.461	ENSBTAG00000009435	SMG5	90	81.461	Bos_taurus
ENSSARG00000012484	SMG5	100	80.916	ENSCJAG00000005684	SMG5	94	80.916	Callithrix_jacchus
ENSSARG00000012484	SMG5	100	80.589	ENSCAFG00000016839	SMG5	90	80.698	Canis_familiaris
ENSSARG00000012484	SMG5	100	80.589	ENSCAFG00020006061	SMG5	90	80.698	Canis_lupus_dingo
ENSSARG00000012484	SMG5	100	81.025	ENSCHIG00000007709	SMG5	90	81.025	Capra_hircus
ENSSARG00000012484	SMG5	99	37.405	ENSCHIG00000006323	-	90	37.351	Capra_hircus
ENSSARG00000012484	SMG5	100	80.937	ENSTSYG00000004099	SMG5	90	80.937	Carlito_syrichta
ENSSARG00000012484	SMG5	79	95.349	ENSCAPG00000003631	SMG5	76	95.349	Cavia_aperea
ENSSARG00000012484	SMG5	100	79.652	ENSCPOG00000015696	SMG5	90	80.087	Cavia_porcellus
ENSSARG00000012484	SMG5	100	81.243	ENSCCAG00000027409	SMG5	90	81.243	Cebus_capucinus
ENSSARG00000012484	SMG5	100	81.134	ENSCATG00000030539	SMG5	90	81.134	Cercocebus_atys
ENSSARG00000012484	SMG5	100	80.740	ENSCLAG00000003983	SMG5	90	81.175	Chinchilla_lanigera
ENSSARG00000012484	SMG5	100	81.025	ENSCSAG00000002120	SMG5	90	81.025	Chlorocebus_sabaeus
ENSSARG00000012484	SMG5	93	65.953	ENSCPBG00000025848	SMG5	90	66.104	Chrysemys_picta_bellii
ENSSARG00000012484	SMG5	92	37.591	ENSCING00000008706	-	87	37.591	Ciona_intestinalis
ENSSARG00000012484	SMG5	100	76.990	ENSCANG00000029208	SMG5	90	76.990	Colobus_angolensis_palliatus
ENSSARG00000012484	SMG5	100	77.258	ENSCGRG00001006336	Smg5	90	77.802	Cricetulus_griseus_chok1gshd
ENSSARG00000012484	SMG5	53	40.568	ENSCGRG00001000584	-	90	40.041	Cricetulus_griseus_chok1gshd
ENSSARG00000012484	SMG5	97	76.760	ENSCGRG00000005111	Smg5	90	77.293	Cricetulus_griseus_crigri
ENSSARG00000012484	SMG5	94	68.705	ENSCSEG00000014220	smg5	85	68.705	Cynoglossus_semilaevis
ENSSARG00000012484	SMG5	90	87.586	ENSCVAG00000000529	smg5	83	87.586	Cyprinodon_variegatus
ENSSARG00000012484	SMG5	76	67.986	ENSDARG00000041481	smg5	64	67.986	Danio_rerio
ENSSARG00000012484	SMG5	100	76.663	ENSDNOG00000000051	SMG5	90	76.663	Dasypus_novemcinctus
ENSSARG00000012484	SMG5	100	78.999	ENSDORG00000010382	Smg5	90	78.672	Dipodomys_ordii
ENSSARG00000012484	SMG5	82	95.146	ENSETEG00000010336	SMG5	82	95.146	Echinops_telfairi
ENSSARG00000012484	SMG5	85	51.590	ENSEBUG00000003739	smg5	95	39.869	Eptatretus_burgeri
ENSSARG00000012484	SMG5	100	81.352	ENSEASG00005019122	SMG5	90	81.352	Equus_asinus_asinus
ENSSARG00000012484	SMG5	100	81.243	ENSECAG00000001389	SMG5	90	81.243	Equus_caballus
ENSSARG00000012484	SMG5	68	92.058	ENSEEUG00000012690	SMG5	63	92.058	Erinaceus_europaeus
ENSSARG00000012484	SMG5	85	86.897	ENSELUG00000012585	smg5	79	86.897	Esox_lucius
ENSSARG00000012484	SMG5	100	80.480	ENSFCAG00000011783	SMG5	90	80.480	Felis_catus
ENSSARG00000012484	SMG5	62	70.332	ENSFALG00000001166	-	95	70.332	Ficedula_albicollis
ENSSARG00000012484	SMG5	97	79.754	ENSFDAG00000017388	SMG5	90	79.642	Fukomys_damarensis
ENSSARG00000012484	SMG5	85	71.028	ENSFHEG00000013939	smg5	84	71.028	Fundulus_heteroclitus
ENSSARG00000012484	SMG5	94	70.251	ENSGMOG00000007310	smg5	64	70.251	Gadus_morhua
ENSSARG00000012484	SMG5	89	97.122	ENSGALG00000029918	-	85	94.079	Gallus_gallus
ENSSARG00000012484	SMG5	69	69.626	ENSGAFG00000021691	smg5	86	69.626	Gambusia_affinis
ENSSARG00000012484	SMG5	94	69.039	ENSGACG00000013142	smg5	85	69.039	Gasterosteus_aculeatus
ENSSARG00000012484	SMG5	100	68.134	ENSGAGG00000016131	SMG5	91	68.134	Gopherus_agassizii
ENSSARG00000012484	SMG5	100	81.025	ENSGGOG00000010932	SMG5	90	81.025	Gorilla_gorilla
ENSSARG00000012484	SMG5	94	70.863	ENSHBUG00000008654	smg5	85	70.863	Haplochromis_burtoni
ENSSARG00000012484	SMG5	100	80.305	ENSHGLG00000019152	SMG5	90	80.631	Heterocephalus_glaber_female
ENSSARG00000012484	SMG5	99	80.263	ENSHGLG00100015948	SMG5	99	80.592	Heterocephalus_glaber_male
ENSSARG00000012484	SMG5	71	67.876	ENSHCOG00000010229	smg5	72	67.876	Hippocampus_comes
ENSSARG00000012484	SMG5	99	54.482	ENSIPUG00000006624	Smg5	91	55.276	Ictalurus_punctatus
ENSSARG00000012484	SMG5	100	81.897	ENSSTOG00000001780	SMG5	90	81.897	Ictidomys_tridecemlineatus
ENSSARG00000012484	SMG5	100	77.283	ENSJJAG00000022763	Smg5	90	77.500	Jaculus_jaculus
ENSSARG00000012484	SMG5	94	70.144	ENSLBEG00000002145	smg5	89	59.263	Labrus_bergylta
ENSSARG00000012484	SMG5	100	54.298	ENSLACG00000010521	SMG5	91	54.507	Latimeria_chalumnae
ENSSARG00000012484	SMG5	77	63.615	ENSLOCG00000008380	smg5	99	53.405	Lepisosteus_oculatus
ENSSARG00000012484	SMG5	100	79.280	ENSLAFG00000006241	SMG5	90	79.826	Loxodonta_africana
ENSSARG00000012484	SMG5	100	81.134	ENSMFAG00000045357	SMG5	90	81.134	Macaca_fascicularis
ENSSARG00000012484	SMG5	100	81.134	ENSMMUG00000000090	SMG5	90	81.134	Macaca_mulatta
ENSSARG00000012484	SMG5	100	81.025	ENSMNEG00000044425	SMG5	90	81.025	Macaca_nemestrina
ENSSARG00000012484	SMG5	100	74.159	ENSMLEG00000041192	SMG5	90	74.159	Mandrillus_leucophaeus
ENSSARG00000012484	SMG5	94	70.144	ENSMAMG00000010683	smg5	63	70.144	Mastacembelus_armatus
ENSSARG00000012484	SMG5	59	56.206	ENSMZEG00005016543	smg5	79	70.968	Maylandia_zebra
ENSSARG00000012484	SMG5	99	57.884	ENSMZEG00005015815	smg5	91	58.811	Maylandia_zebra
ENSSARG00000012484	SMG5	100	77.040	ENSMAUG00000010381	Smg5	90	77.693	Mesocricetus_auratus
ENSSARG00000012484	SMG5	61	36.907	ENSMAUG00000000043	-	96	36.237	Mesocricetus_auratus
ENSSARG00000012484	SMG5	100	81.243	ENSMICG00000002257	SMG5	90	81.243	Microcebus_murinus
ENSSARG00000012484	SMG5	100	77.307	ENSMOCG00000016590	Smg5	92	77.199	Microtus_ochrogaster
ENSSARG00000012484	SMG5	53	38.353	ENSMOCG00000008423	-	84	38.506	Microtus_ochrogaster
ENSSARG00000012484	SMG5	99	53.069	ENSMMOG00000017199	smg5	91	53.861	Mola_mola
ENSSARG00000012484	SMG5	89	38.267	ENSMODG00000004735	-	76	38.267	Monodelphis_domestica
ENSSARG00000012484	SMG5	74	35.714	ENSMODG00000010675	-	75	35.714	Monodelphis_domestica
ENSSARG00000012484	SMG5	90	34.173	ENSMODG00000004532	-	74	34.892	Monodelphis_domestica
ENSSARG00000012484	SMG5	97	75.901	ENSMODG00000016901	SMG5	98	76.351	Monodelphis_domestica
ENSSARG00000012484	SMG5	82	38.129	ENSMODG00000004511	-	68	38.129	Monodelphis_domestica
ENSSARG00000012484	SMG5	94	68.345	ENSMALG00000010375	smg5	78	68.345	Monopterus_albus
ENSSARG00000012484	SMG5	100	77.040	MGP_CAROLIEiJ_G0025163	Smg5	90	77.584	Mus_caroli
ENSSARG00000012484	SMG5	100	77.258	ENSMUSG00000001415	Smg5	90	77.802	Mus_musculus
ENSSARG00000012484	SMG5	100	77.174	MGP_PahariEiJ_G0026606	Smg5	90	77.935	Mus_pahari
ENSSARG00000012484	SMG5	100	77.040	MGP_SPRETEiJ_G0026104	Smg5	90	77.584	Mus_spretus
ENSSARG00000012484	SMG5	93	78.026	ENSMPUG00000004546	SMG5	90	78.026	Mustela_putorius_furo
ENSSARG00000012484	SMG5	100	79.848	ENSMLUG00000008518	SMG5	90	79.740	Myotis_lucifugus
ENSSARG00000012484	SMG5	98	36.596	ENSNGAG00000012101	-	88	37.074	Nannospalax_galili
ENSSARG00000012484	SMG5	100	79.521	ENSNGAG00000020706	Smg5	90	79.521	Nannospalax_galili
ENSSARG00000012484	SMG5	99	54.585	ENSNBRG00000004332	smg5	90	56.061	Neolamprologus_brichardi
ENSSARG00000012484	SMG5	100	81.025	ENSNLEG00000012439	SMG5	90	81.025	Nomascus_leucogenys
ENSSARG00000012484	SMG5	100	75.163	ENSMEUG00000012834	SMG5	90	75.599	Notamacropus_eugenii
ENSSARG00000012484	SMG5	100	79.716	ENSOPRG00000009152	SMG5	90	79.716	Ochotona_princeps
ENSSARG00000012484	SMG5	100	80.807	ENSODEG00000012237	SMG5	90	80.916	Octodon_degus
ENSSARG00000012484	SMG5	94	70.144	ENSONIG00000008632	smg5	63	70.144	Oreochromis_niloticus
ENSSARG00000012484	SMG5	97	80.627	ENSOCUG00000012886	SMG5	90	80.627	Oryctolagus_cuniculus
ENSSARG00000012484	SMG5	99	34.103	ENSOCUG00000023338	-	98	33.923	Oryctolagus_cuniculus
ENSSARG00000012484	SMG5	94	67.986	ENSORLG00000016239	smg5	85	67.986	Oryzias_latipes
ENSSARG00000012484	SMG5	94	67.986	ENSORLG00020013127	smg5	85	67.986	Oryzias_latipes_hni
ENSSARG00000012484	SMG5	94	67.986	ENSORLG00015019014	smg5	85	67.986	Oryzias_latipes_hsok
ENSSARG00000012484	SMG5	85	62.755	ENSOMEG00000021330	smg5	86	62.755	Oryzias_melastigma
ENSSARG00000012484	SMG5	100	79.498	ENSOGAG00000004966	SMG5	90	80.371	Otolemur_garnettii
ENSSARG00000012484	SMG5	100	81.134	ENSOARG00000005778	SMG5	90	81.134	Ovis_aries
ENSSARG00000012484	SMG5	99	37.244	ENSOARG00000011963	-	89	37.297	Ovis_aries
ENSSARG00000012484	SMG5	100	81.025	ENSPPAG00000011996	SMG5	90	81.025	Pan_paniscus
ENSSARG00000012484	SMG5	97	80.179	ENSPPRG00000011901	SMG5	90	80.179	Panthera_pardus
ENSSARG00000012484	SMG5	90	91.915	ENSPTIG00000007892	SMG5	86	89.558	Panthera_tigris_altaica
ENSSARG00000012484	SMG5	100	81.134	ENSPTRG00000049282	-	90	81.134	Pan_troglodytes
ENSSARG00000012484	SMG5	100	81.134	ENSPTRG00000023925	SMG5	90	81.134	Pan_troglodytes
ENSSARG00000012484	SMG5	100	81.134	ENSPANG00000011201	SMG5	90	81.134	Papio_anubis
ENSSARG00000012484	SMG5	99	59.783	ENSPKIG00000009402	smg5	90	59.935	Paramormyrops_kingsleyae
ENSSARG00000012484	SMG5	97	69.163	ENSPSIG00000015198	SMG5	90	69.053	Pelodiscus_sinensis
ENSSARG00000012484	SMG5	94	62.590	ENSPMGG00000010465	smg5	85	62.590	Periophthalmus_magnuspinnatus
ENSSARG00000012484	SMG5	62	37.500	ENSPEMG00000010022	-	95	36.159	Peromyscus_maniculatus_bairdii
ENSSARG00000012484	SMG5	100	77.584	ENSPEMG00000001819	Smg5	90	78.128	Peromyscus_maniculatus_bairdii
ENSSARG00000012484	SMG5	93	50.172	ENSPMAG00000000410	smg5	84	50.172	Petromyzon_marinus
ENSSARG00000012484	SMG5	100	76.605	ENSPCIG00000018938	SMG5	90	77.040	Phascolarctos_cinereus
ENSSARG00000012484	SMG5	92	61.959	ENSPFOG00000010191	smg5	91	55.281	Poecilia_formosa
ENSSARG00000012484	SMG5	92	61.959	ENSPLAG00000009332	smg5	91	55.084	Poecilia_latipinna
ENSSARG00000012484	SMG5	99	58.635	ENSPMEG00000014105	smg5	90	58.936	Poecilia_mexicana
ENSSARG00000012484	SMG5	92	61.959	ENSPREG00000017713	smg5	91	55.183	Poecilia_reticulata
ENSSARG00000012484	SMG5	100	81.134	ENSPPYG00000000723	SMG5	90	81.134	Pongo_abelii
ENSSARG00000012484	SMG5	78	94.231	ENSPCAG00000008412	SMG5	76	94.231	Procavia_capensis
ENSSARG00000012484	SMG5	90	100.000	ENSPCOG00000004741	SMG5	84	100.000	Propithecus_coquereli
ENSSARG00000012484	SMG5	91	94.949	ENSPVAG00000016748	SMG5	82	94.949	Pteropus_vampyrus
ENSSARG00000012484	SMG5	94	70.863	ENSPNYG00000013397	smg5	85	70.863	Pundamilia_nyererei
ENSSARG00000012484	SMG5	94	68.705	ENSPNAG00000028363	smg5	64	68.705	Pygocentrus_nattereri
ENSSARG00000012484	SMG5	100	77.367	ENSRNOG00000019590	Smg5	90	77.911	Rattus_norvegicus
ENSSARG00000012484	SMG5	100	81.025	ENSRBIG00000027428	SMG5	90	81.025	Rhinopithecus_bieti
ENSSARG00000012484	SMG5	100	80.916	ENSRROG00000030035	SMG5	90	80.916	Rhinopithecus_roxellana
ENSSARG00000012484	SMG5	100	81.461	ENSSBOG00000033339	SMG5	90	81.461	Saimiri_boliviensis_boliviensis
ENSSARG00000012484	SMG5	74	34.420	ENSSHAG00000009572	-	69	34.420	Sarcophilus_harrisii
ENSSARG00000012484	SMG5	97	75.556	ENSSHAG00000014163	SMG5	90	76.000	Sarcophilus_harrisii
ENSSARG00000012484	SMG5	86	39.068	ENSSHAG00000000561	-	75	38.849	Sarcophilus_harrisii
ENSSARG00000012484	SMG5	72	37.778	ENSSHAG00000000935	-	82	37.778	Sarcophilus_harrisii
ENSSARG00000012484	SMG5	94	69.784	ENSSFOG00015024175	smg5	90	59.697	Scleropages_formosus
ENSSARG00000012484	SMG5	85	87.586	ENSSMAG00000013059	smg5	80	87.586	Scophthalmus_maximus
ENSSARG00000012484	SMG5	94	69.784	ENSSDUG00000007122	smg5	85	69.784	Seriola_dumerili
ENSSARG00000012484	SMG5	94	69.784	ENSSLDG00000011418	smg5	85	69.784	Seriola_lalandi_dorsalis
ENSSARG00000012484	SMG5	88	78.058	ENSSPUG00000002260	SMG5	92	65.766	Sphenodon_punctatus
ENSSARG00000012484	SMG5	99	58.235	ENSSPAG00000014266	smg5	85	70.863	Stegastes_partitus
ENSSARG00000012484	SMG5	100	81.788	ENSSSCG00000006490	-	90	81.788	Sus_scrofa
ENSSARG00000012484	SMG5	53	35.510	ENSSSCG00000037182	-	70	37.081	Sus_scrofa
ENSSARG00000012484	SMG5	99	62.745	ENSSSCG00000039308	-	90	63.210	Sus_scrofa
ENSSARG00000012484	SMG5	99	69.079	ENSTGUG00000003748	-	90	68.973	Taeniopygia_guttata
ENSSARG00000012484	SMG5	99	57.929	ENSTRUG00000012580	smg5	89	57.282	Takifugu_rubripes
ENSSARG00000012484	SMG5	94	68.705	ENSTNIG00000010303	smg5	90	57.066	Tetraodon_nigroviridis
ENSSARG00000012484	SMG5	100	75.791	ENSTTRG00000001401	SMG5	90	75.791	Tursiops_truncatus
ENSSARG00000012484	SMG5	100	80.044	ENSUAMG00000013721	SMG5	90	80.153	Ursus_americanus
ENSSARG00000012484	SMG5	99	72.976	ENSUMAG00000018041	SMG5	87	75.531	Ursus_maritimus
ENSSARG00000012484	SMG5	97	70.740	ENSVPAG00000009446	SMG5	90	70.740	Vicugna_pacos
ENSSARG00000012484	SMG5	100	80.589	ENSVVUG00000005887	SMG5	90	80.698	Vulpes_vulpes
ENSSARG00000012484	SMG5	73	61.877	ENSXETG00000033791	SMG5	86	61.437	Xenopus_tropicalis
ENSSARG00000012484	SMG5	56	80.723	ENSXCOG00000004379	smg5	84	80.723	Xiphophorus_couchianus
ENSSARG00000012484	SMG5	99	58.988	ENSXMAG00000013499	smg5	86	68.705	Xiphophorus_maculatus