EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSARG00000014012 (Gene tree)
Gene ID: -
Gene Symbol: PABPC5
Alias: PABP5
Full Name: poly(A) binding protein cytoplasmic 5
Gene Type: protein_coding
Species: Sorex_araneus
Status: putative
Strand: Plus strand
Length: 1149 bases
Position: chrGeneScaffold_5894:67380-68528
Accession: 101554232
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSARP00000012664	RRM_5	PF13893.6	7.4e-11	1	1
ENSSARP00000012664	RRM_1	PF00076.22	3.2e-78	1	4
ENSSARP00000012664	RRM_1	PF00076.22	3.2e-78	2	4
ENSSARP00000012664	RRM_1	PF00076.22	3.2e-78	3	4
ENSSARP00000012664	RRM_1	PF00076.22	3.2e-78	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSART00000014009	PABPC5-201	1149	-	ENSSARP00000012664	382 (aa)	XP_004611702	UPI00015825DF

Gene Model

Click here to download ENSSARG00000014012's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSARG00000014012's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSARG00000014012	PABPC5	96	59.341	ENSSARG00000000310	PABPC4	50	66.234
ENSSARG00000014012	PABPC5	94	33.333	ENSSARG00000005702	ELAVL2	61	33.333
ENSSARG00000014012	PABPC5	66	40.278	ENSSARG00000013091	ELAVL1	50	40.278

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSARG00000014012	PABPC5	99	94.226	ENSG00000174740	PABPC5	99	94.226	Homo_sapiens
ENSSARG00000014012	PABPC5	99	94.751	ENSAMEG00000020114	PABPC5	100	94.751	Ailuropoda_melanoleuca
ENSSARG00000014012	PABPC5	99	94.226	ENSANAG00000005063	PABPC5	99	94.226	Aotus_nancymaae
ENSSARG00000014012	PABPC5	100	94.764	ENSBTAG00000019942	PABPC5	100	94.764	Bos_taurus
ENSSARG00000014012	PABPC5	99	93.701	ENSCJAG00000003665	PABPC5	99	93.701	Callithrix_jacchus
ENSSARG00000014012	PABPC5	100	94.241	ENSCAFG00000017452	PABPC5	100	94.241	Canis_familiaris
ENSSARG00000014012	PABPC5	100	93.979	ENSCHIG00000019004	PABPC5	100	93.979	Capra_hircus
ENSSARG00000014012	PABPC5	100	93.717	ENSTSYG00000036351	PABPC5	100	93.717	Carlito_syrichta
ENSSARG00000014012	PABPC5	99	84.817	ENSCAPG00000010714	PABPC5	100	84.817	Cavia_aperea
ENSSARG00000014012	PABPC5	100	91.885	ENSCPOG00000002555	PABPC5	100	91.885	Cavia_porcellus
ENSSARG00000014012	PABPC5	99	94.226	ENSCCAG00000032154	PABPC5	99	94.226	Cebus_capucinus
ENSSARG00000014012	PABPC5	99	94.488	ENSCATG00000043083	PABPC5	99	94.488	Cercocebus_atys
ENSSARG00000014012	PABPC5	100	92.147	ENSCLAG00000000647	PABPC5	100	92.147	Chinchilla_lanigera
ENSSARG00000014012	PABPC5	99	94.488	ENSCSAG00000000065	PABPC5	99	94.488	Chlorocebus_sabaeus
ENSSARG00000014012	PABPC5	99	94.488	ENSCANG00000011473	PABPC5	99	94.488	Colobus_angolensis_palliatus
ENSSARG00000014012	PABPC5	100	90.838	ENSCGRG00000018699	Pabpc5	100	90.838	Cricetulus_griseus_crigri
ENSSARG00000014012	PABPC5	100	75.718	ENSETEG00000011832	PABPC5	100	75.718	Echinops_telfairi
ENSSARG00000014012	PABPC5	100	94.764	ENSEASG00005014396	PABPC5	100	94.764	Equus_asinus_asinus
ENSSARG00000014012	PABPC5	100	94.764	ENSECAG00000003452	PABPC5	100	94.764	Equus_caballus
ENSSARG00000014012	PABPC5	100	94.503	ENSFCAG00000004998	PABPC5	100	94.503	Felis_catus
ENSSARG00000014012	PABPC5	100	93.194	ENSFDAG00000000126	PABPC5	100	93.194	Fukomys_damarensis
ENSSARG00000014012	PABPC5	99	94.226	ENSGGOG00000007622	PABPC5	99	94.226	Gorilla_gorilla
ENSSARG00000014012	PABPC5	95	93.119	ENSJJAG00000011960	Pabpc5	100	93.119	Jaculus_jaculus
ENSSARG00000014012	PABPC5	99	94.488	ENSMFAG00000024561	PABPC5	99	94.488	Macaca_fascicularis
ENSSARG00000014012	PABPC5	99	94.488	ENSMMUG00000011562	PABPC5	99	94.488	Macaca_mulatta
ENSSARG00000014012	PABPC5	99	94.488	ENSMNEG00000037604	PABPC5	99	94.488	Macaca_nemestrina
ENSSARG00000014012	PABPC5	99	94.488	ENSMLEG00000028318	PABPC5	99	94.488	Mandrillus_leucophaeus
ENSSARG00000014012	PABPC5	100	93.979	ENSMICG00000041706	PABPC5	100	93.979	Microcebus_murinus
ENSSARG00000014012	PABPC5	100	92.932	ENSMOCG00000001554	Pabpc5	100	92.932	Microtus_ochrogaster
ENSSARG00000014012	PABPC5	99	90.789	MGP_CAROLIEiJ_G0033367	Pabpc5	99	90.789	Mus_caroli
ENSSARG00000014012	PABPC5	99	91.316	ENSMUSG00000034732	Pabpc5	99	91.316	Mus_musculus
ENSSARG00000014012	PABPC5	100	91.623	MGP_PahariEiJ_G0031908	Pabpc5	100	91.623	Mus_pahari
ENSSARG00000014012	PABPC5	99	91.316	MGP_SPRETEiJ_G0034533	Pabpc5	99	91.316	Mus_spretus
ENSSARG00000014012	PABPC5	100	93.717	ENSMPUG00000018465	PABPC5	100	93.717	Mustela_putorius_furo
ENSSARG00000014012	PABPC5	100	93.717	ENSMLUG00000008244	PABPC5	100	93.717	Myotis_lucifugus
ENSSARG00000014012	PABPC5	95	91.743	ENSNGAG00000004371	Pabpc5	100	91.743	Nannospalax_galili
ENSSARG00000014012	PABPC5	99	94.226	ENSNLEG00000035086	PABPC5	99	94.226	Nomascus_leucogenys
ENSSARG00000014012	PABPC5	98	96.833	ENSOPRG00000000856	PABPC5	100	96.833	Ochotona_princeps
ENSSARG00000014012	PABPC5	100	93.979	ENSOCUG00000010919	PABPC5	100	93.979	Oryctolagus_cuniculus
ENSSARG00000014012	PABPC5	100	93.717	ENSOGAG00000006882	PABPC5	100	93.717	Otolemur_garnettii
ENSSARG00000014012	PABPC5	100	94.241	ENSOARG00000010260	PABPC5	100	94.241	Ovis_aries
ENSSARG00000014012	PABPC5	99	93.963	ENSPPAG00000007378	PABPC5	99	93.963	Pan_paniscus
ENSSARG00000014012	PABPC5	100	94.503	ENSPPRG00000010742	PABPC5	100	94.503	Panthera_pardus
ENSSARG00000014012	PABPC5	100	94.503	ENSPTIG00000001480	PABPC5	100	94.503	Panthera_tigris_altaica
ENSSARG00000014012	PABPC5	99	94.226	ENSPTRG00000022078	PABPC5	99	94.226	Pan_troglodytes
ENSSARG00000014012	PABPC5	99	94.488	ENSPANG00000018282	PABPC5	99	94.488	Papio_anubis
ENSSARG00000014012	PABPC5	100	92.408	ENSPEMG00000000171	Pabpc5	100	92.408	Peromyscus_maniculatus_bairdii
ENSSARG00000014012	PABPC5	99	94.226	ENSPPYG00000020526	PABPC5	99	94.226	Pongo_abelii
ENSSARG00000014012	PABPC5	99	95.636	ENSPCAG00000015577	PABPC5	100	95.636	Procavia_capensis
ENSSARG00000014012	PABPC5	100	93.717	ENSPCOG00000000676	PABPC5	100	93.717	Propithecus_coquereli
ENSSARG00000014012	PABPC5	100	94.503	ENSPVAG00000006465	PABPC5	100	94.503	Pteropus_vampyrus
ENSSARG00000014012	PABPC5	100	91.885	ENSRNOG00000003354	Pabpc5	100	91.885	Rattus_norvegicus
ENSSARG00000014012	PABPC5	99	94.488	ENSRBIG00000011760	PABPC5	99	94.488	Rhinopithecus_bieti
ENSSARG00000014012	PABPC5	99	94.488	ENSRROG00000036708	PABPC5	99	94.488	Rhinopithecus_roxellana
ENSSARG00000014012	PABPC5	99	94.488	ENSSBOG00000008658	PABPC5	99	94.488	Saimiri_boliviensis_boliviensis
ENSSARG00000014012	PABPC5	100	95.026	ENSSSCG00000040194	PABPC5	100	95.026	Sus_scrofa
ENSSARG00000014012	PABPC5	100	95.288	ENSTBEG00000016482	PABPC5	100	95.288	Tupaia_belangeri
ENSSARG00000014012	PABPC5	100	94.503	ENSUAMG00000013627	PABPC5	100	94.503	Ursus_americanus
ENSSARG00000014012	PABPC5	100	94.241	ENSUMAG00000023934	PABPC5	100	94.241	Ursus_maritimus
ENSSARG00000014012	PABPC5	100	94.764	ENSVPAG00000001063	PABPC5	100	94.764	Vicugna_pacos
ENSSARG00000014012	PABPC5	100	94.503	ENSVVUG00000013172	PABPC5	100	94.503	Vulpes_vulpes