EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSBOG00000000359 (Gene tree)
Gene ID: 101029192
Gene Symbol: EXOSC1
Alias: CGI-108|CSL4|Csl4p|SKI4|Ski4p|hCsl4p|p13
Full Name: exosome component 1
Gene Type: protein_coding
Species: Saimiri_boliviensis_boliviensis
Status: putative
Strand: Plus strand
Length: 10000 bases
Position: chrJH378110.1:35054081-35064080
Accession: 17286
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSBOP00000000142	EXOSC1	PF10447.9	7.7e-15	1	1
ENSSBOP00000000158	EXOSC1	PF10447.9	2.4e-13	1	1
ENSSBOP00000000158	ECR1_N	PF14382.6	7.4e-09	1	1
ENSSBOP00000000151	ECR1_N	PF14382.6	8.9e-09	1	1
ENSSBOP00000000142	ECR1_N	PF14382.6	9.2e-09	1	1
ENSSBOP00000000155	ECR1_N	PF14382.6	9.6e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSBOT00000000657	EXOSC1-203	537	-	ENSSBOP00000000155	178 (aa)	-	A0A2K6RYE7
ENSSBOT00000000610	EXOSC1-201	924	XM_003922338	ENSSBOP00000000142	195 (aa)	XP_003922387	A0A2K6RYC7
ENSSBOT00000000644	EXOSC1-202	495	-	ENSSBOP00000000151	164 (aa)	-	A0A2K6RYG7
ENSSBOT00000000661	EXOSC1-204	513	-	ENSSBOP00000000158	170 (aa)	-	A0A2K6RYD9

Gene Model

Click here to download ENSSBOG00000000359's gene model file

Pathways

Pathway ID	Pathway Name	Source
sbq03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSBOG00000000359's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSBOG00000000359	EXOSC1	100	98.824	ENSG00000171311	EXOSC1	100	98.824	Homo_sapiens
ENSSBOG00000000359	EXOSC1	98	80.105	ENSAPOG00000007822	exosc1	98	80.105	Acanthochromis_polyacanthus
ENSSBOG00000000359	EXOSC1	100	98.974	ENSAMEG00000000129	EXOSC1	100	98.974	Ailuropoda_melanoleuca
ENSSBOG00000000359	EXOSC1	96	79.787	ENSACIG00000018956	exosc1	92	79.787	Amphilophus_citrinellus
ENSSBOG00000000359	EXOSC1	98	80.105	ENSAOCG00000010699	exosc1	98	80.105	Amphiprion_ocellaris
ENSSBOG00000000359	EXOSC1	91	78.395	ENSAPEG00000012690	exosc1	96	78.395	Amphiprion_percula
ENSSBOG00000000359	EXOSC1	98	79.581	ENSATEG00000018683	exosc1	98	79.581	Anabas_testudineus
ENSSBOG00000000359	EXOSC1	99	85.492	ENSACAG00000002101	EXOSC1	99	85.492	Anolis_carolinensis
ENSSBOG00000000359	EXOSC1	100	100.000	ENSANAG00000034669	EXOSC1	100	100.000	Aotus_nancymaae
ENSSBOG00000000359	EXOSC1	98	80.105	ENSACLG00000021243	exosc1	98	80.105	Astatotilapia_calliptera
ENSSBOG00000000359	EXOSC1	98	81.675	ENSAMXG00000011116	exosc1	98	81.675	Astyanax_mexicanus
ENSSBOG00000000359	EXOSC1	100	98.462	ENSBTAG00000012699	EXOSC1	100	98.462	Bos_taurus
ENSSBOG00000000359	EXOSC1	92	32.979	WBGene00012966	exos-1	90	32.979	Caenorhabditis_elegans
ENSSBOG00000000359	EXOSC1	100	99.487	ENSCJAG00000016586	EXOSC1	100	99.487	Callithrix_jacchus
ENSSBOG00000000359	EXOSC1	100	98.462	ENSCAFG00000009068	EXOSC1	94	98.462	Canis_familiaris
ENSSBOG00000000359	EXOSC1	100	98.462	ENSCAFG00020006002	EXOSC1	94	98.462	Canis_lupus_dingo
ENSSBOG00000000359	EXOSC1	100	98.462	ENSCHIG00000015253	EXOSC1	100	98.462	Capra_hircus
ENSSBOG00000000359	EXOSC1	100	98.235	ENSTSYG00000000760	EXOSC1	100	98.235	Carlito_syrichta
ENSSBOG00000000359	EXOSC1	100	98.462	ENSCPOG00000001173	EXOSC1	100	98.462	Cavia_porcellus
ENSSBOG00000000359	EXOSC1	100	62.941	ENSCCAG00000023986	EXOSC1	100	62.941	Cebus_capucinus
ENSSBOG00000000359	EXOSC1	100	98.824	ENSCATG00000034114	EXOSC1	100	98.824	Cercocebus_atys
ENSSBOG00000000359	EXOSC1	100	98.974	ENSCLAG00000002463	EXOSC1	100	98.974	Chinchilla_lanigera
ENSSBOG00000000359	EXOSC1	100	97.949	ENSCSAG00000005870	EXOSC1	100	97.949	Chlorocebus_sabaeus
ENSSBOG00000000359	EXOSC1	96	83.957	ENSCHOG00000006477	EXOSC1	100	83.957	Choloepus_hoffmanni
ENSSBOG00000000359	EXOSC1	68	80.357	ENSCPBG00000011949	EXOSC1	93	80.357	Chrysemys_picta_bellii
ENSSBOG00000000359	EXOSC1	95	56.150	ENSCING00000022734	-	89	56.150	Ciona_intestinalis
ENSSBOG00000000359	EXOSC1	95	57.754	ENSCSAVG00000010865	-	95	57.754	Ciona_savignyi
ENSSBOG00000000359	EXOSC1	100	98.824	ENSCANG00000034159	EXOSC1	100	98.824	Colobus_angolensis_palliatus
ENSSBOG00000000359	EXOSC1	100	97.436	ENSCGRG00001000335	Exosc1	100	97.436	Cricetulus_griseus_chok1gshd
ENSSBOG00000000359	EXOSC1	100	97.436	ENSCGRG00000011602	Exosc1	100	97.436	Cricetulus_griseus_crigri
ENSSBOG00000000359	EXOSC1	98	77.711	ENSCSEG00000007895	exosc1	95	77.711	Cynoglossus_semilaevis
ENSSBOG00000000359	EXOSC1	98	76.440	ENSCVAG00000016748	exosc1	98	76.440	Cyprinodon_variegatus
ENSSBOG00000000359	EXOSC1	98	80.628	ENSDARG00000059841	exosc1	98	80.628	Danio_rerio
ENSSBOG00000000359	EXOSC1	75	98.649	ENSDNOG00000007983	EXOSC1	100	98.649	Dasypus_novemcinctus
ENSSBOG00000000359	EXOSC1	100	97.949	ENSDORG00000016528	Exosc1	100	97.949	Dipodomys_ordii
ENSSBOG00000000359	EXOSC1	94	48.677	FBgn0032346	Csl4	92	48.677	Drosophila_melanogaster
ENSSBOG00000000359	EXOSC1	100	96.410	ENSETEG00000002469	-	100	96.410	Echinops_telfairi
ENSSBOG00000000359	EXOSC1	99	62.245	ENSEBUG00000008164	exosc1	98	62.245	Eptatretus_burgeri
ENSSBOG00000000359	EXOSC1	100	89.362	ENSEASG00005008684	EXOSC1	100	89.362	Equus_asinus_asinus
ENSSBOG00000000359	EXOSC1	99	80.982	ENSECAG00000010621	EXOSC1	99	80.982	Equus_caballus
ENSSBOG00000000359	EXOSC1	100	97.949	ENSEEUG00000005647	EXOSC1	100	97.949	Erinaceus_europaeus
ENSSBOG00000000359	EXOSC1	94	80.978	ENSELUG00000017369	exosc1	97	72.455	Esox_lucius
ENSSBOG00000000359	EXOSC1	100	99.412	ENSFCAG00000040563	EXOSC1	100	99.412	Felis_catus
ENSSBOG00000000359	EXOSC1	100	83.590	ENSFALG00000008450	EXOSC1	100	83.590	Ficedula_albicollis
ENSSBOG00000000359	EXOSC1	100	98.974	ENSFDAG00000000846	EXOSC1	100	98.974	Fukomys_damarensis
ENSSBOG00000000359	EXOSC1	98	76.440	ENSFHEG00000009154	exosc1	98	76.440	Fundulus_heteroclitus
ENSSBOG00000000359	EXOSC1	98	80.105	ENSGMOG00000008993	exosc1	98	80.105	Gadus_morhua
ENSSBOG00000000359	EXOSC1	100	83.529	ENSGALG00000039917	EXOSC1	100	86.986	Gallus_gallus
ENSSBOG00000000359	EXOSC1	98	76.963	ENSGAFG00000010265	exosc1	94	76.963	Gambusia_affinis
ENSSBOG00000000359	EXOSC1	98	80.105	ENSGACG00000018936	exosc1	98	80.105	Gasterosteus_aculeatus
ENSSBOG00000000359	EXOSC1	100	85.128	ENSGAGG00000019192	EXOSC1	100	85.128	Gopherus_agassizii
ENSSBOG00000000359	EXOSC1	100	97.647	ENSGGOG00000003099	EXOSC1	100	97.647	Gorilla_gorilla
ENSSBOG00000000359	EXOSC1	98	80.105	ENSHBUG00000017857	exosc1	98	80.105	Haplochromis_burtoni
ENSSBOG00000000359	EXOSC1	100	98.462	ENSHGLG00000016927	EXOSC1	100	98.462	Heterocephalus_glaber_female
ENSSBOG00000000359	EXOSC1	100	98.462	ENSHGLG00100012208	EXOSC1	100	98.462	Heterocephalus_glaber_male
ENSSBOG00000000359	EXOSC1	98	79.058	ENSHCOG00000019882	exosc1	98	79.058	Hippocampus_comes
ENSSBOG00000000359	EXOSC1	98	80.628	ENSIPUG00000007685	exosc1	98	80.628	Ictalurus_punctatus
ENSSBOG00000000359	EXOSC1	100	98.974	ENSSTOG00000006615	EXOSC1	100	98.974	Ictidomys_tridecemlineatus
ENSSBOG00000000359	EXOSC1	73	85.950	ENSSTOG00000029860	-	93	85.950	Ictidomys_tridecemlineatus
ENSSBOG00000000359	EXOSC1	100	97.949	ENSJJAG00000013311	Exosc1	100	97.949	Jaculus_jaculus
ENSSBOG00000000359	EXOSC1	98	78.125	ENSKMAG00000001202	exosc1	81	78.125	Kryptolebias_marmoratus
ENSSBOG00000000359	EXOSC1	98	79.581	ENSLBEG00000011448	exosc1	98	79.581	Labrus_bergylta
ENSSBOG00000000359	EXOSC1	98	61.143	ENSLOCG00000003776	exosc1	98	61.143	Lepisosteus_oculatus
ENSSBOG00000000359	EXOSC1	100	97.949	ENSLAFG00000015983	EXOSC1	100	97.949	Loxodonta_africana
ENSSBOG00000000359	EXOSC1	100	98.824	ENSMFAG00000001493	EXOSC1	100	98.824	Macaca_fascicularis
ENSSBOG00000000359	EXOSC1	100	98.824	ENSMMUG00000020028	EXOSC1	100	98.824	Macaca_mulatta
ENSSBOG00000000359	EXOSC1	100	98.824	ENSMNEG00000029816	EXOSC1	100	98.824	Macaca_nemestrina
ENSSBOG00000000359	EXOSC1	100	92.821	ENSMLEG00000027643	EXOSC1	100	92.821	Mandrillus_leucophaeus
ENSSBOG00000000359	EXOSC1	98	80.628	ENSMAMG00000012200	exosc1	98	80.628	Mastacembelus_armatus
ENSSBOG00000000359	EXOSC1	98	80.105	ENSMZEG00005007042	exosc1	98	80.105	Maylandia_zebra
ENSSBOG00000000359	EXOSC1	100	97.647	ENSMAUG00000020462	-	100	97.647	Mesocricetus_auratus
ENSSBOG00000000359	EXOSC1	100	98.462	ENSMICG00000007664	EXOSC1	100	98.315	Microcebus_murinus
ENSSBOG00000000359	EXOSC1	97	91.053	ENSMOCG00000017124	-	97	91.053	Microtus_ochrogaster
ENSSBOG00000000359	EXOSC1	100	97.436	ENSMOCG00000006004	-	100	97.436	Microtus_ochrogaster
ENSSBOG00000000359	EXOSC1	99	60.674	ENSMMOG00000021403	exosc1	99	60.674	Mola_mola
ENSSBOG00000000359	EXOSC1	100	92.857	ENSMODG00000004213	EXOSC1	100	92.857	Monodelphis_domestica
ENSSBOG00000000359	EXOSC1	94	80.978	ENSMALG00000007061	exosc1	92	80.978	Monopterus_albus
ENSSBOG00000000359	EXOSC1	100	96.923	MGP_CAROLIEiJ_G0022959	Exosc1	100	96.923	Mus_caroli
ENSSBOG00000000359	EXOSC1	100	97.436	ENSMUSG00000034321	Exosc1	100	97.436	Mus_musculus
ENSSBOG00000000359	EXOSC1	100	97.436	MGP_PahariEiJ_G0014449	Exosc1	100	97.436	Mus_pahari
ENSSBOG00000000359	EXOSC1	100	96.923	MGP_SPRETEiJ_G0023880	Exosc1	100	96.923	Mus_spretus
ENSSBOG00000000359	EXOSC1	100	98.974	ENSMPUG00000017044	EXOSC1	100	98.974	Mustela_putorius_furo
ENSSBOG00000000359	EXOSC1	100	98.462	ENSMLUG00000009228	EXOSC1	100	98.462	Myotis_lucifugus
ENSSBOG00000000359	EXOSC1	100	96.410	ENSNGAG00000022033	Exosc1	100	96.410	Nannospalax_galili
ENSSBOG00000000359	EXOSC1	98	61.143	ENSNBRG00000024007	exosc1	97	61.143	Neolamprologus_brichardi
ENSSBOG00000000359	EXOSC1	100	98.235	ENSNLEG00000013872	EXOSC1	100	98.235	Nomascus_leucogenys
ENSSBOG00000000359	EXOSC1	70	91.304	ENSMEUG00000002246	EXOSC1	100	91.304	Notamacropus_eugenii
ENSSBOG00000000359	EXOSC1	100	96.923	ENSOPRG00000005065	EXOSC1	100	96.923	Ochotona_princeps
ENSSBOG00000000359	EXOSC1	100	98.462	ENSODEG00000016709	EXOSC1	100	98.462	Octodon_degus
ENSSBOG00000000359	EXOSC1	98	80.105	ENSONIG00000017683	exosc1	98	80.105	Oreochromis_niloticus
ENSSBOG00000000359	EXOSC1	68	93.913	ENSOANG00000006563	EXOSC1	100	91.270	Ornithorhynchus_anatinus
ENSSBOG00000000359	EXOSC1	100	97.449	ENSOCUG00000011898	-	100	97.449	Oryctolagus_cuniculus
ENSSBOG00000000359	EXOSC1	100	92.308	ENSOCUG00000026461	-	100	92.308	Oryctolagus_cuniculus
ENSSBOG00000000359	EXOSC1	98	78.646	ENSORLG00000011595	exosc1	98	78.646	Oryzias_latipes
ENSSBOG00000000359	EXOSC1	98	78.646	ENSORLG00020005831	exosc1	98	78.646	Oryzias_latipes_hni
ENSSBOG00000000359	EXOSC1	98	78.646	ENSORLG00015004317	exosc1	98	78.646	Oryzias_latipes_hsok
ENSSBOG00000000359	EXOSC1	98	63.351	ENSOMEG00000013907	exosc1	98	63.351	Oryzias_melastigma
ENSSBOG00000000359	EXOSC1	100	97.949	ENSOGAG00000016259	EXOSC1	100	97.949	Otolemur_garnettii
ENSSBOG00000000359	EXOSC1	100	97.949	ENSOARG00000010136	EXOSC1	100	97.949	Ovis_aries
ENSSBOG00000000359	EXOSC1	100	92.386	ENSPPAG00000039842	EXOSC1	100	92.386	Pan_paniscus
ENSSBOG00000000359	EXOSC1	100	99.412	ENSPPRG00000023366	EXOSC1	100	99.412	Panthera_pardus
ENSSBOG00000000359	EXOSC1	100	99.412	ENSPTIG00000017701	EXOSC1	100	99.412	Panthera_tigris_altaica
ENSSBOG00000000359	EXOSC1	100	98.824	ENSPTRG00000002808	EXOSC1	100	98.824	Pan_troglodytes
ENSSBOG00000000359	EXOSC1	100	98.824	ENSPANG00000021324	EXOSC1	100	98.824	Papio_anubis
ENSSBOG00000000359	EXOSC1	98	81.152	ENSPKIG00000016037	exosc1	98	81.152	Paramormyrops_kingsleyae
ENSSBOG00000000359	EXOSC1	75	82.192	ENSPSIG00000013571	EXOSC1	98	81.818	Pelodiscus_sinensis
ENSSBOG00000000359	EXOSC1	98	77.711	ENSPMGG00000014002	exosc1	98	77.711	Periophthalmus_magnuspinnatus
ENSSBOG00000000359	EXOSC1	100	97.436	ENSPEMG00000010710	-	100	97.436	Peromyscus_maniculatus_bairdii
ENSSBOG00000000359	EXOSC1	95	71.123	ENSPMAG00000000195	exosc1	95	71.123	Petromyzon_marinus
ENSSBOG00000000359	EXOSC1	100	93.846	ENSPCIG00000002210	EXOSC1	99	93.846	Phascolarctos_cinereus
ENSSBOG00000000359	EXOSC1	98	76.440	ENSPFOG00000006755	exosc1	94	76.440	Poecilia_formosa
ENSSBOG00000000359	EXOSC1	98	76.440	ENSPLAG00000005880	exosc1	98	76.440	Poecilia_latipinna
ENSSBOG00000000359	EXOSC1	98	76.440	ENSPMEG00000015598	exosc1	94	76.440	Poecilia_mexicana
ENSSBOG00000000359	EXOSC1	98	75.301	ENSPREG00000000405	exosc1	93	75.301	Poecilia_reticulata
ENSSBOG00000000359	EXOSC1	100	97.949	ENSPPYG00000002531	EXOSC1	100	97.949	Pongo_abelii
ENSSBOG00000000359	EXOSC1	100	97.949	ENSPCAG00000009135	EXOSC1	100	97.949	Procavia_capensis
ENSSBOG00000000359	EXOSC1	100	92.308	ENSPCOG00000027539	EXOSC1	100	92.308	Propithecus_coquereli
ENSSBOG00000000359	EXOSC1	100	98.974	ENSPVAG00000003372	EXOSC1	100	98.974	Pteropus_vampyrus
ENSSBOG00000000359	EXOSC1	98	80.105	ENSPNYG00000021745	exosc1	98	80.105	Pundamilia_nyererei
ENSSBOG00000000359	EXOSC1	99	79.762	ENSPNAG00000001944	exosc1	99	79.762	Pygocentrus_nattereri
ENSSBOG00000000359	EXOSC1	100	97.436	ENSRNOG00000048708	Exosc1	100	97.436	Rattus_norvegicus
ENSSBOG00000000359	EXOSC1	100	98.824	ENSRBIG00000035618	EXOSC1	100	98.824	Rhinopithecus_bieti
ENSSBOG00000000359	EXOSC1	100	98.824	ENSRROG00000032589	EXOSC1	100	98.824	Rhinopithecus_roxellana
ENSSBOG00000000359	EXOSC1	75	96.599	ENSSHAG00000018219	EXOSC1	100	96.599	Sarcophilus_harrisii
ENSSBOG00000000359	EXOSC1	98	82.723	ENSSFOG00015009069	exosc1	98	82.723	Scleropages_formosus
ENSSBOG00000000359	EXOSC1	98	77.844	ENSSFOG00015016289	-	98	77.895	Scleropages_formosus
ENSSBOG00000000359	EXOSC1	98	80.628	ENSSMAG00000003721	exosc1	98	80.628	Scophthalmus_maximus
ENSSBOG00000000359	EXOSC1	98	80.628	ENSSDUG00000002993	exosc1	98	80.628	Seriola_dumerili
ENSSBOG00000000359	EXOSC1	98	80.628	ENSSLDG00000025181	exosc1	98	80.628	Seriola_lalandi_dorsalis
ENSSBOG00000000359	EXOSC1	100	84.615	ENSSARG00000000162	EXOSC1	100	84.615	Sorex_araneus
ENSSBOG00000000359	EXOSC1	99	83.505	ENSSPUG00000012263	EXOSC1	99	83.505	Sphenodon_punctatus
ENSSBOG00000000359	EXOSC1	98	78.736	ENSSPAG00000016792	exosc1	82	78.736	Stegastes_partitus
ENSSBOG00000000359	EXOSC1	100	97.949	ENSSSCG00000010518	EXOSC1	91	97.949	Sus_scrofa
ENSSBOG00000000359	EXOSC1	98	81.771	ENSTGUG00000009692	EXOSC1	99	81.771	Taeniopygia_guttata
ENSSBOG00000000359	EXOSC1	97	74.074	ENSTRUG00000007706	exosc1	98	74.074	Takifugu_rubripes
ENSSBOG00000000359	EXOSC1	97	73.958	ENSTNIG00000014079	exosc1	97	73.958	Tetraodon_nigroviridis
ENSSBOG00000000359	EXOSC1	100	89.744	ENSTBEG00000006011	EXOSC1	100	89.744	Tupaia_belangeri
ENSSBOG00000000359	EXOSC1	94	98.913	ENSTTRG00000009887	EXOSC1	100	98.913	Tursiops_truncatus
ENSSBOG00000000359	EXOSC1	100	82.051	ENSUAMG00000010266	EXOSC1	100	82.051	Ursus_americanus
ENSSBOG00000000359	EXOSC1	100	82.051	ENSUMAG00000022002	EXOSC1	100	82.051	Ursus_maritimus
ENSSBOG00000000359	EXOSC1	100	98.462	ENSVVUG00000023192	EXOSC1	63	98.462	Vulpes_vulpes
ENSSBOG00000000359	EXOSC1	98	78.646	ENSXETG00000003434	exosc1	99	78.646	Xenopus_tropicalis
ENSSBOG00000000359	EXOSC1	71	85.000	ENSXCOG00000014499	exosc1	92	85.000	Xiphophorus_couchianus
ENSSBOG00000000359	EXOSC1	98	75.904	ENSXMAG00000023382	exosc1	93	75.904	Xiphophorus_maculatus