EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSBOG00000000403 (Gene tree)
Gene ID: 101039712
Gene Symbol: PRDM4
Alias: PFM1
Full Name: PR/SET domain 4
Gene Type: protein_coding
Species: Saimiri_boliviensis_boliviensis
Status: putative
Strand: Plus strand
Length: 32203 bases
Position: chrJH378153.1:16048400-16080602
Accession: 9348
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSBOP00000000130	zf-C2H2	PF00096.26	6.3e-19	1	2
ENSSBOP00000000130	zf-C2H2	PF00096.26	6.3e-19	2	2
ENSSBOP00000000132	zf-C2H2	PF00096.26	4.2e-13	1	1
ENSSBOP00000000130	zf-met	PF12874.7	4.9e-05	1	1
ENSSBOP00000000132	zf-met	PF12874.7	0.00012	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSBOT00000000563	PRDM4-202	5882	-	ENSSBOP00000000132	696 (aa)	-	A0A2K6RYB6
ENSSBOT00000000561	PRDM4-201	6197	XM_010342912	ENSSBOP00000000130	801 (aa)	XP_010341214	A0A2K6RYC2

Gene Model

Click here to download ENSSBOG00000000403's gene model file

Pathways

Pathway ID	Pathway Name	Source
sbq04722	Neurotrophin signaling pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSBOG00000000403's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSBOG00000000403	PRDM4	100	99.126	ENSG00000110851	PRDM4	100	100.000	Homo_sapiens
ENSSBOG00000000403	PRDM4	99	97.247	ENSAMEG00000016174	PRDM4	99	97.247	Ailuropoda_melanoleuca
ENSSBOG00000000403	PRDM4	99	87.343	ENSAPLG00000009846	PRDM4	99	86.717	Anas_platyrhynchos
ENSSBOG00000000403	PRDM4	100	99.376	ENSANAG00000024800	PRDM4	100	99.376	Aotus_nancymaae
ENSSBOG00000000403	PRDM4	100	96.879	ENSBTAG00000012999	PRDM4	100	96.879	Bos_taurus
ENSSBOG00000000403	PRDM4	100	99.001	ENSCJAG00000015261	PRDM4	100	99.001	Callithrix_jacchus
ENSSBOG00000000403	PRDM4	100	97.253	ENSCAFG00000001788	PRDM4	100	97.253	Canis_familiaris
ENSSBOG00000000403	PRDM4	100	97.253	ENSCAFG00020004916	PRDM4	100	97.253	Canis_lupus_dingo
ENSSBOG00000000403	PRDM4	100	96.754	ENSCHIG00000019409	PRDM4	100	96.754	Capra_hircus
ENSSBOG00000000403	PRDM4	100	97.753	ENSTSYG00000009248	PRDM4	100	97.753	Carlito_syrichta
ENSSBOG00000000403	PRDM4	99	90.864	ENSCAPG00000013937	PRDM4	99	90.738	Cavia_aperea
ENSSBOG00000000403	PRDM4	99	90.311	ENSCPOG00000022385	PRDM4	100	90.186	Cavia_porcellus
ENSSBOG00000000403	PRDM4	100	99.625	ENSCCAG00000036033	PRDM4	100	99.625	Cebus_capucinus
ENSSBOG00000000403	PRDM4	100	98.752	ENSCATG00000044797	PRDM4	100	98.752	Cercocebus_atys
ENSSBOG00000000403	PRDM4	99	92.662	ENSCLAG00000007545	PRDM4	100	93.035	Chinchilla_lanigera
ENSSBOG00000000403	PRDM4	100	99.001	ENSCSAG00000002896	PRDM4	100	99.001	Chlorocebus_sabaeus
ENSSBOG00000000403	PRDM4	76	98.182	ENSCHOG00000001744	PRDM4	86	98.182	Choloepus_hoffmanni
ENSSBOG00000000403	PRDM4	99	88.206	ENSCPBG00000023187	PRDM4	100	87.829	Chrysemys_picta_bellii
ENSSBOG00000000403	PRDM4	100	98.876	ENSCANG00000021804	PRDM4	100	98.876	Colobus_angolensis_palliatus
ENSSBOG00000000403	PRDM4	99	93.284	ENSCGRG00001015102	-	100	92.910	Cricetulus_griseus_chok1gshd
ENSSBOG00000000403	PRDM4	96	93.290	ENSCGRG00000004044	-	100	92.903	Cricetulus_griseus_crigri
ENSSBOG00000000403	PRDM4	100	96.629	ENSDNOG00000032478	PRDM4	100	100.000	Dasypus_novemcinctus
ENSSBOG00000000403	PRDM4	99	82.058	ENSDORG00000015081	-	100	91.250	Dipodomys_ordii
ENSSBOG00000000403	PRDM4	92	61.017	ENSEBUG00000003775	prdm4	98	59.677	Eptatretus_burgeri
ENSSBOG00000000403	PRDM4	100	97.253	ENSECAG00000015423	PRDM4	100	97.253	Equus_caballus
ENSSBOG00000000403	PRDM4	94	93.076	ENSEEUG00000006569	PRDM4	99	92.676	Erinaceus_europaeus
ENSSBOG00000000403	PRDM4	99	62.874	ENSELUG00000015265	prdm4	99	62.874	Esox_lucius
ENSSBOG00000000403	PRDM4	100	97.753	ENSFCAG00000022478	PRDM4	100	97.753	Felis_catus
ENSSBOG00000000403	PRDM4	99	87.453	ENSFALG00000013342	PRDM4	100	86.951	Ficedula_albicollis
ENSSBOG00000000403	PRDM4	100	86.800	ENSGALG00000012619	PRDM4	100	86.177	Gallus_gallus
ENSSBOG00000000403	PRDM4	99	87.845	ENSGAGG00000002763	PRDM4	95	87.469	Gopherus_agassizii
ENSSBOG00000000403	PRDM4	99	99.000	ENSGGOG00000001244	PRDM4	99	99.000	Gorilla_gorilla
ENSSBOG00000000403	PRDM4	99	93.726	ENSHGLG00000004590	PRDM4	98	93.476	Heterocephalus_glaber_female
ENSSBOG00000000403	PRDM4	99	92.671	ENSHGLG00100007464	PRDM4	100	92.422	Heterocephalus_glaber_male
ENSSBOG00000000403	PRDM4	94	70.833	ENSIPUG00000024162	prdm4	93	73.684	Ictalurus_punctatus
ENSSBOG00000000403	PRDM4	100	96.629	ENSSTOG00000016168	PRDM4	100	96.629	Ictidomys_tridecemlineatus
ENSSBOG00000000403	PRDM4	82	93.548	ENSJJAG00000022448	-	95	93.548	Jaculus_jaculus
ENSSBOG00000000403	PRDM4	99	72.772	ENSLACG00000007452	PRDM4	99	76.364	Latimeria_chalumnae
ENSSBOG00000000403	PRDM4	75	80.952	ENSLOCG00000017092	prdm4	100	52.814	Lepisosteus_oculatus
ENSSBOG00000000403	PRDM4	98	96.574	ENSLAFG00000001483	PRDM4	100	96.574	Loxodonta_africana
ENSSBOG00000000403	PRDM4	100	99.126	ENSMFAG00000041862	PRDM4	100	99.126	Macaca_fascicularis
ENSSBOG00000000403	PRDM4	100	99.126	ENSMMUG00000015550	PRDM4	100	99.126	Macaca_mulatta
ENSSBOG00000000403	PRDM4	100	98.876	ENSMNEG00000032319	PRDM4	100	98.876	Macaca_nemestrina
ENSSBOG00000000403	PRDM4	100	99.001	ENSMLEG00000039607	PRDM4	100	99.001	Mandrillus_leucophaeus
ENSSBOG00000000403	PRDM4	99	79.500	ENSMGAG00000012815	PRDM4	100	84.375	Meleagris_gallopavo
ENSSBOG00000000403	PRDM4	100	96.754	ENSMICG00000007807	PRDM4	100	96.754	Microcebus_murinus
ENSSBOG00000000403	PRDM4	99	94.110	ENSMOCG00000000753	Prdm4	99	93.860	Microtus_ochrogaster
ENSSBOG00000000403	PRDM4	99	94.479	ENSMUSG00000035529	Prdm4	100	94.228	Mus_musculus
ENSSBOG00000000403	PRDM4	99	93.852	MGP_PahariEiJ_G0031398	Prdm4	100	93.901	Mus_pahari
ENSSBOG00000000403	PRDM4	99	95.107	MGP_SPRETEiJ_G0016505	Prdm4	100	95.172	Mus_spretus
ENSSBOG00000000403	PRDM4	99	91.147	ENSMPUG00000012238	PRDM4	99	91.147	Mustela_putorius_furo
ENSSBOG00000000403	PRDM4	99	96.992	ENSMLUG00000000767	PRDM4	99	96.992	Myotis_lucifugus
ENSSBOG00000000403	PRDM4	99	95.859	ENSNGAG00000018627	Prdm4	100	95.859	Nannospalax_galili
ENSSBOG00000000403	PRDM4	100	99.001	ENSNLEG00000006748	PRDM4	100	99.001	Nomascus_leucogenys
ENSSBOG00000000403	PRDM4	89	88.732	ENSMEUG00000004495	PRDM4	89	88.732	Notamacropus_eugenii
ENSSBOG00000000403	PRDM4	88	94.643	ENSOPRG00000010192	PRDM4	89	94.643	Ochotona_princeps
ENSSBOG00000000403	PRDM4	99	90.875	ENSODEG00000014750	PRDM4	99	90.750	Octodon_degus
ENSSBOG00000000403	PRDM4	100	90.762	ENSOANG00000005526	PRDM4	100	90.762	Ornithorhynchus_anatinus
ENSSBOG00000000403	PRDM4	93	96.567	ENSOCUG00000012859	PRDM4	96	96.567	Oryctolagus_cuniculus
ENSSBOG00000000403	PRDM4	99	97.992	ENSOGAG00000011945	PRDM4	100	97.992	Otolemur_garnettii
ENSSBOG00000000403	PRDM4	100	96.504	ENSOARG00000017955	PRDM4	100	96.504	Ovis_aries
ENSSBOG00000000403	PRDM4	100	99.376	ENSPPAG00000038438	PRDM4	100	99.376	Pan_paniscus
ENSSBOG00000000403	PRDM4	100	97.753	ENSPPRG00000004144	PRDM4	100	97.753	Panthera_pardus
ENSSBOG00000000403	PRDM4	100	97.753	ENSPTIG00000005847	PRDM4	100	97.753	Panthera_tigris_altaica
ENSSBOG00000000403	PRDM4	100	99.126	ENSPTRG00000005400	PRDM4	100	99.126	Pan_troglodytes
ENSSBOG00000000403	PRDM4	100	99.126	ENSPANG00000022084	PRDM4	100	99.126	Papio_anubis
ENSSBOG00000000403	PRDM4	93	74.790	ENSPKIG00000000875	prdm4	92	76.068	Paramormyrops_kingsleyae
ENSSBOG00000000403	PRDM4	91	81.439	ENSPSIG00000012066	PRDM4	100	87.500	Pelodiscus_sinensis
ENSSBOG00000000403	PRDM4	99	95.734	ENSPEMG00000014598	Prdm4	100	95.734	Peromyscus_maniculatus_bairdii
ENSSBOG00000000403	PRDM4	100	89.055	ENSPCIG00000009471	PRDM4	100	89.055	Phascolarctos_cinereus
ENSSBOG00000000403	PRDM4	100	99.001	ENSPPYG00000004913	PRDM4	100	99.001	Pongo_abelii
ENSSBOG00000000403	PRDM4	83	95.833	ENSPCAG00000009987	PRDM4	83	95.833	Procavia_capensis
ENSSBOG00000000403	PRDM4	100	96.754	ENSPCOG00000021060	PRDM4	100	96.754	Propithecus_coquereli
ENSSBOG00000000403	PRDM4	100	96.758	ENSPVAG00000001596	PRDM4	100	96.758	Pteropus_vampyrus
ENSSBOG00000000403	PRDM4	99	94.110	ENSRNOG00000004962	Prdm4	100	93.860	Rattus_norvegicus
ENSSBOG00000000403	PRDM4	100	98.876	ENSRBIG00000035488	PRDM4	100	98.876	Rhinopithecus_bieti
ENSSBOG00000000403	PRDM4	100	99.001	ENSRROG00000012779	PRDM4	100	99.001	Rhinopithecus_roxellana
ENSSBOG00000000403	PRDM4	99	63.670	ENSSFOG00015023358	prdm4	99	69.427	Scleropages_formosus
ENSSBOG00000000403	PRDM4	100	97.004	ENSSSCG00000000160	PRDM4	100	97.004	Sus_scrofa
ENSSBOG00000000403	PRDM4	99	87.594	ENSTGUG00000010962	-	99	87.093	Taeniopygia_guttata
ENSSBOG00000000403	PRDM4	77	100.000	ENSTBEG00000001732	PRDM4	84	100.000	Tupaia_belangeri
ENSSBOG00000000403	PRDM4	100	96.629	ENSTTRG00000011056	PRDM4	100	96.629	Tursiops_truncatus
ENSSBOG00000000403	PRDM4	100	97.628	ENSUAMG00000022796	PRDM4	100	97.628	Ursus_americanus
ENSSBOG00000000403	PRDM4	100	97.628	ENSUMAG00000017231	PRDM4	100	97.628	Ursus_maritimus
ENSSBOG00000000403	PRDM4	99	97.491	ENSVPAG00000002215	PRDM4	100	97.491	Vicugna_pacos
ENSSBOG00000000403	PRDM4	100	97.253	ENSVVUG00000023397	PRDM4	100	97.253	Vulpes_vulpes