EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSBOG00000008658 (Gene tree)
Gene ID: 101034168
Gene Symbol: PABPC5
Alias: PABP5
Full Name: poly(A) binding protein cytoplasmic 5
Gene Type: protein_coding
Species: Saimiri_boliviensis_boliviensis
Status: putative
Strand: Minus strand
Length: 1149 bases
Position: chrJH378210.1:2700767-2701915
Accession: 13629
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSBOP00000001667	RRM_5	PF13893.6	9.3e-13	1	2
ENSSBOP00000001667	RRM_5	PF13893.6	9.3e-13	2	2
ENSSBOP00000001667	RRM_1	PF00076.22	4.5e-77	1	4
ENSSBOP00000001667	RRM_1	PF00076.22	4.5e-77	2	4
ENSSBOP00000001667	RRM_1	PF00076.22	4.5e-77	3	4
ENSSBOP00000001667	RRM_1	PF00076.22	4.5e-77	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSBOT00000009559	PABPC5-201	1149	XM_003938699	ENSSBOP00000001667	382 (aa)	XP_003938748	A0A2K6S2Q5

Gene Model

Click here to download ENSSBOG00000008658's gene model file

Pathways

Pathway ID	Pathway Name	Source
sbq03013	RNA transport	KEGG
sbq03015	mRNA surveillance pathway	KEGG
sbq03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSBOG00000008658's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSBOG00000008658	PABPC5	98	61.995	ENSSBOG00000022216	PABPC1	56	62.921
ENSSBOG00000008658	PABPC5	97	37.037	ENSSBOG00000022965	ELAVL4	66	37.037
ENSSBOG00000008658	PABPC5	96	60.714	ENSSBOG00000016382	PABPC4L	98	60.674
ENSSBOG00000008658	PABPC5	96	63.968	ENSSBOG00000025499	-	74	64.167
ENSSBOG00000008658	PABPC5	93	34.444	ENSSBOG00000021984	CELF3	54	35.616
ENSSBOG00000008658	PABPC5	95	58.402	ENSSBOG00000020745	-	79	58.427
ENSSBOG00000008658	PABPC5	94	35.802	ENSSBOG00000028114	ELAVL2	88	35.802
ENSSBOG00000008658	PABPC5	96	67.218	ENSSBOG00000026193	PABPC4	60	67.416
ENSSBOG00000008658	PABPC5	98	58.445	ENSSBOG00000021975	-	80	58.939
ENSSBOG00000008658	PABPC5	91	47.719	ENSSBOG00000026437	-	58	47.719
ENSSBOG00000008658	PABPC5	96	59.504	ENSSBOG00000009532	-	61	59.551
ENSSBOG00000008658	PABPC5	74	30.508	ENSSBOG00000021299	TRNAU1AP	58	30.409
ENSSBOG00000008658	PABPC5	95	61.708	ENSSBOG00000023677	PABPC3	58	62.079

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSBOG00000008658	PABPC5	100	99.738	ENSG00000174740	PABPC5	100	99.738	Homo_sapiens
ENSSBOG00000008658	PABPC5	99	97.375	ENSAMEG00000020114	PABPC5	100	97.375	Ailuropoda_melanoleuca
ENSSBOG00000008658	PABPC5	100	99.738	ENSANAG00000005063	PABPC5	100	99.738	Aotus_nancymaae
ENSSBOG00000008658	PABPC5	99	96.850	ENSBTAG00000019942	PABPC5	99	96.850	Bos_taurus
ENSSBOG00000008658	PABPC5	100	99.215	ENSCJAG00000003665	PABPC5	100	99.215	Callithrix_jacchus
ENSSBOG00000008658	PABPC5	99	96.850	ENSCAFG00000017452	PABPC5	99	96.850	Canis_familiaris
ENSSBOG00000008658	PABPC5	99	96.850	ENSCHIG00000019004	PABPC5	99	96.850	Capra_hircus
ENSSBOG00000008658	PABPC5	99	97.638	ENSTSYG00000036351	PABPC5	99	97.638	Carlito_syrichta
ENSSBOG00000008658	PABPC5	99	87.895	ENSCAPG00000010714	PABPC5	99	87.895	Cavia_aperea
ENSSBOG00000008658	PABPC5	99	94.226	ENSCPOG00000002555	PABPC5	99	94.226	Cavia_porcellus
ENSSBOG00000008658	PABPC5	100	99.738	ENSCCAG00000032154	PABPC5	100	99.738	Cebus_capucinus
ENSSBOG00000008658	PABPC5	100	99.476	ENSCATG00000043083	PABPC5	100	99.476	Cercocebus_atys
ENSSBOG00000008658	PABPC5	99	95.538	ENSCLAG00000000647	PABPC5	99	95.538	Chinchilla_lanigera
ENSSBOG00000008658	PABPC5	100	99.476	ENSCSAG00000000065	PABPC5	100	99.476	Chlorocebus_sabaeus
ENSSBOG00000008658	PABPC5	100	99.476	ENSCANG00000011473	PABPC5	100	99.476	Colobus_angolensis_palliatus
ENSSBOG00000008658	PABPC5	99	93.963	ENSCGRG00000018699	Pabpc5	99	93.963	Cricetulus_griseus_crigri
ENSSBOG00000008658	PABPC5	99	78.796	ENSETEG00000011832	PABPC5	99	78.796	Echinops_telfairi
ENSSBOG00000008658	PABPC5	99	97.638	ENSEASG00005014396	PABPC5	99	97.638	Equus_asinus_asinus
ENSSBOG00000008658	PABPC5	99	97.638	ENSECAG00000003452	PABPC5	99	97.638	Equus_caballus
ENSSBOG00000008658	PABPC5	99	97.113	ENSFCAG00000004998	PABPC5	99	97.113	Felis_catus
ENSSBOG00000008658	PABPC5	99	96.325	ENSFDAG00000000126	PABPC5	99	96.325	Fukomys_damarensis
ENSSBOG00000008658	PABPC5	100	99.738	ENSGGOG00000007622	PABPC5	100	99.738	Gorilla_gorilla
ENSSBOG00000008658	PABPC5	95	96.313	ENSJJAG00000011960	Pabpc5	99	96.313	Jaculus_jaculus
ENSSBOG00000008658	PABPC5	100	99.476	ENSMFAG00000024561	PABPC5	100	99.476	Macaca_fascicularis
ENSSBOG00000008658	PABPC5	100	99.476	ENSMMUG00000011562	PABPC5	100	99.476	Macaca_mulatta
ENSSBOG00000008658	PABPC5	100	99.476	ENSMNEG00000037604	PABPC5	100	99.476	Macaca_nemestrina
ENSSBOG00000008658	PABPC5	100	99.476	ENSMLEG00000028318	PABPC5	100	99.476	Mandrillus_leucophaeus
ENSSBOG00000008658	PABPC5	99	96.325	ENSMICG00000041706	PABPC5	99	96.325	Microcebus_murinus
ENSSBOG00000008658	PABPC5	99	95.276	ENSMOCG00000001554	Pabpc5	99	95.276	Microtus_ochrogaster
ENSSBOG00000008658	PABPC5	99	94.723	MGP_CAROLIEiJ_G0033367	Pabpc5	99	94.723	Mus_caroli
ENSSBOG00000008658	PABPC5	99	95.251	ENSMUSG00000034732	Pabpc5	99	95.251	Mus_musculus
ENSSBOG00000008658	PABPC5	99	95.538	MGP_PahariEiJ_G0031908	Pabpc5	99	95.538	Mus_pahari
ENSSBOG00000008658	PABPC5	99	95.251	MGP_SPRETEiJ_G0034533	Pabpc5	99	95.251	Mus_spretus
ENSSBOG00000008658	PABPC5	99	96.588	ENSMPUG00000018465	PABPC5	99	96.588	Mustela_putorius_furo
ENSSBOG00000008658	PABPC5	99	96.063	ENSMLUG00000008244	PABPC5	99	96.063	Myotis_lucifugus
ENSSBOG00000008658	PABPC5	95	95.392	ENSNGAG00000004371	Pabpc5	99	95.392	Nannospalax_galili
ENSSBOG00000008658	PABPC5	100	99.738	ENSNLEG00000035086	PABPC5	100	99.738	Nomascus_leucogenys
ENSSBOG00000008658	PABPC5	98	97.285	ENSOPRG00000000856	PABPC5	100	97.285	Ochotona_princeps
ENSSBOG00000008658	PABPC5	99	97.638	ENSOCUG00000010919	PABPC5	99	97.638	Oryctolagus_cuniculus
ENSSBOG00000008658	PABPC5	99	96.588	ENSOGAG00000006882	PABPC5	99	96.588	Otolemur_garnettii
ENSSBOG00000008658	PABPC5	99	97.113	ENSOARG00000010260	PABPC5	99	97.113	Ovis_aries
ENSSBOG00000008658	PABPC5	100	99.476	ENSPPAG00000007378	PABPC5	100	99.476	Pan_paniscus
ENSSBOG00000008658	PABPC5	99	97.113	ENSPPRG00000010742	PABPC5	99	97.113	Panthera_pardus
ENSSBOG00000008658	PABPC5	99	97.113	ENSPTIG00000001480	PABPC5	99	97.113	Panthera_tigris_altaica
ENSSBOG00000008658	PABPC5	100	99.738	ENSPTRG00000022078	PABPC5	100	99.738	Pan_troglodytes
ENSSBOG00000008658	PABPC5	100	99.476	ENSPANG00000018282	PABPC5	100	99.476	Papio_anubis
ENSSBOG00000008658	PABPC5	99	94.751	ENSPEMG00000000171	Pabpc5	99	94.751	Peromyscus_maniculatus_bairdii
ENSSBOG00000008658	PABPC5	100	99.738	ENSPPYG00000020526	PABPC5	100	99.738	Pongo_abelii
ENSSBOG00000008658	PABPC5	99	97.091	ENSPCAG00000015577	PABPC5	100	97.091	Procavia_capensis
ENSSBOG00000008658	PABPC5	99	97.113	ENSPCOG00000000676	PABPC5	99	97.113	Propithecus_coquereli
ENSSBOG00000008658	PABPC5	99	97.375	ENSPVAG00000006465	PABPC5	99	97.375	Pteropus_vampyrus
ENSSBOG00000008658	PABPC5	99	95.276	ENSRNOG00000003354	Pabpc5	99	95.276	Rattus_norvegicus
ENSSBOG00000008658	PABPC5	100	99.476	ENSRBIG00000011760	PABPC5	100	99.476	Rhinopithecus_bieti
ENSSBOG00000008658	PABPC5	100	99.476	ENSRROG00000036708	PABPC5	100	99.476	Rhinopithecus_roxellana
ENSSBOG00000008658	PABPC5	99	94.488	ENSSARG00000014012	PABPC5	99	94.488	Sorex_araneus
ENSSBOG00000008658	PABPC5	99	96.850	ENSSSCG00000040194	PABPC5	99	96.850	Sus_scrofa
ENSSBOG00000008658	PABPC5	99	97.900	ENSTBEG00000016482	PABPC5	99	97.900	Tupaia_belangeri
ENSSBOG00000008658	PABPC5	99	96.850	ENSUAMG00000013627	PABPC5	99	96.850	Ursus_americanus
ENSSBOG00000008658	PABPC5	99	96.588	ENSUMAG00000023934	PABPC5	99	96.588	Ursus_maritimus
ENSSBOG00000008658	PABPC5	99	97.375	ENSVPAG00000001063	PABPC5	99	97.375	Vicugna_pacos
ENSSBOG00000008658	PABPC5	99	97.113	ENSVVUG00000013172	PABPC5	99	97.113	Vulpes_vulpes