EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSBOG00000011665 (Gene tree)
Gene ID: 101028267
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saimiri_boliviensis_boliviensis
Status: putative
Strand: Plus strand
Length: 44245 bases
Position: chrJH378120.1:2874162-2918406
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSBOP00000002332	SMN	PF06003.12	8.2e-105	1	1
ENSSBOP00000002336	SMN	PF06003.12	6.8e-93	1	2
ENSSBOP00000002336	SMN	PF06003.12	6.8e-93	2	2
ENSSBOP00000002338	SMN	PF06003.12	2.1e-58	1	2
ENSSBOP00000002338	SMN	PF06003.12	2.1e-58	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSBOT00000013425	-	675	-	ENSSBOP00000002338	224 (aa)	-	A0A2K6S4N4
ENSSBOT00000013412	-	789	XM_003925770	ENSSBOP00000002336	262 (aa)	XP_003925819	A0A2K6S4M7
ENSSBOT00000013397	-	1047	XM_003925768	ENSSBOP00000002332	291 (aa)	XP_003925817	A0A2K6S4M6

Gene Model

Click here to download ENSSBOG00000011665's gene model file

Pathways

Pathway ID	Pathway Name	Source
sbq03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSBOG00000011665's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSBOG00000011665	-	77	98.462	ENSSBOG00000020112	-	87	90.800

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSBOG00000011665	-	100	94.505	ENSG00000205571	SMN2	98	97.778	Homo_sapiens
ENSSBOG00000011665	-	100	94.505	ENSG00000172062	SMN1	100	94.505	Homo_sapiens
ENSSBOG00000011665	-	91	49.638	ENSAPOG00000011324	smn1	94	54.545	Acanthochromis_polyacanthus
ENSSBOG00000011665	-	95	86.738	ENSAMEG00000003316	-	93	86.738	Ailuropoda_melanoleuca
ENSSBOG00000011665	-	88	50.000	ENSACIG00000019772	-	97	50.385	Amphilophus_citrinellus
ENSSBOG00000011665	-	91	50.376	ENSAOCG00000024444	smn1	94	54.545	Amphiprion_ocellaris
ENSSBOG00000011665	-	91	50.752	ENSAPEG00000016504	smn1	94	54.909	Amphiprion_percula
ENSSBOG00000011665	-	88	51.493	ENSATEG00000002182	smn1	83	54.480	Anabas_testudineus
ENSSBOG00000011665	-	67	55.330	ENSAPLG00000010912	-	97	54.315	Anas_platyrhynchos
ENSSBOG00000011665	-	84	81.633	ENSACAG00000010017	-	95	60.791	Anolis_carolinensis
ENSSBOG00000011665	-	100	95.270	ENSANAG00000032133	-	100	95.270	Aotus_nancymaae
ENSSBOG00000011665	-	91	53.261	ENSACLG00000007308	smn1	88	55.639	Astatotilapia_calliptera
ENSSBOG00000011665	-	54	57.746	ENSAMXG00000013884	smn1	97	48.162	Astyanax_mexicanus
ENSSBOG00000011665	-	95	82.143	ENSBTAG00000005743	SMN2	97	81.362	Bos_taurus
ENSSBOG00000011665	-	85	32.751	WBGene00004887	smn-1	94	31.532	Caenorhabditis_elegans
ENSSBOG00000011665	-	100	99.237	ENSCJAG00000016290	-	100	99.237	Callithrix_jacchus
ENSSBOG00000011665	-	95	85.305	ENSCAFG00000007812	SMN	97	85.305	Canis_familiaris
ENSSBOG00000011665	-	95	85.305	ENSCAFG00020019229	-	90	85.305	Canis_lupus_dingo
ENSSBOG00000011665	-	95	81.915	ENSCHIG00000015559	-	95	81.851	Capra_hircus
ENSSBOG00000011665	-	99	88.077	ENSTSYG00000012058	-	96	91.250	Carlito_syrichta
ENSSBOG00000011665	-	74	72.811	ENSCAPG00000011021	-	96	72.685	Cavia_aperea
ENSSBOG00000011665	-	98	81.633	ENSCPOG00000012328	-	96	81.404	Cavia_porcellus
ENSSBOG00000011665	-	99	82.818	ENSCPOG00000036973	-	99	82.131	Cavia_porcellus
ENSSBOG00000011665	-	100	97.802	ENSCCAG00000018127	-	100	97.788	Cebus_capucinus
ENSSBOG00000011665	-	100	95.604	ENSCATG00000037002	-	100	95.604	Cercocebus_atys
ENSSBOG00000011665	-	99	83.019	ENSCLAG00000000284	-	99	83.019	Chinchilla_lanigera
ENSSBOG00000011665	-	100	95.604	ENSCSAG00000015688	-	100	91.497	Chlorocebus_sabaeus
ENSSBOG00000011665	-	81	82.812	ENSCHOG00000007346	-	100	73.413	Choloepus_hoffmanni
ENSSBOG00000011665	-	96	63.636	ENSCPBG00000010968	-	99	63.296	Chrysemys_picta_bellii
ENSSBOG00000011665	-	100	87.072	ENSCANG00000033324	-	100	83.588	Colobus_angolensis_palliatus
ENSSBOG00000011665	-	100	95.604	ENSCANG00000038242	-	100	95.604	Colobus_angolensis_palliatus
ENSSBOG00000011665	-	99	80.412	ENSCGRG00001017959	-	97	80.000	Cricetulus_griseus_chok1gshd
ENSSBOG00000011665	-	99	62.630	ENSCGRG00001016998	-	96	62.950	Cricetulus_griseus_chok1gshd
ENSSBOG00000011665	-	99	80.412	ENSCGRG00000007698	Smn1	97	80.000	Cricetulus_griseus_crigri
ENSSBOG00000011665	-	92	50.350	ENSCSEG00000015227	smn1	97	46.763	Cynoglossus_semilaevis
ENSSBOG00000011665	-	92	52.963	ENSCVAG00000007498	smn1	94	54.613	Cyprinodon_variegatus
ENSSBOG00000011665	-	93	52.899	ENSDARG00000018494	smn1	96	53.986	Danio_rerio
ENSSBOG00000011665	-	77	71.642	ENSDNOG00000045949	-	86	70.588	Dasypus_novemcinctus
ENSSBOG00000011665	-	81	84.034	ENSDNOG00000007283	-	99	84.034	Dasypus_novemcinctus
ENSSBOG00000011665	-	99	80.576	ENSDORG00000007082	Smn1	99	76.471	Dipodomys_ordii
ENSSBOG00000011665	-	80	68.571	ENSETEG00000001406	-	89	68.478	Echinops_telfairi
ENSSBOG00000011665	-	91	40.074	ENSEBUG00000011902	smn1	92	40.143	Eptatretus_burgeri
ENSSBOG00000011665	-	95	72.792	ENSEASG00005018000	-	89	77.165	Equus_asinus_asinus
ENSSBOG00000011665	-	93	87.342	ENSECAG00000015215	-	96	82.857	Equus_caballus
ENSSBOG00000011665	-	81	85.938	ENSEEUG00000015777	-	100	79.920	Erinaceus_europaeus
ENSSBOG00000011665	-	85	73.077	ENSELUG00000018067	smn1	94	50.562	Esox_lucius
ENSSBOG00000011665	-	99	86.923	ENSFCAG00000028292	SMN	96	90.000	Felis_catus
ENSSBOG00000011665	-	89	60.536	ENSFALG00000012320	-	91	59.387	Ficedula_albicollis
ENSSBOG00000011665	-	99	78.571	ENSFDAG00000017683	-	99	79.932	Fukomys_damarensis
ENSSBOG00000011665	-	91	49.814	ENSFHEG00000018508	smn1	96	52.768	Fundulus_heteroclitus
ENSSBOG00000011665	-	95	47.101	ENSGMOG00000017279	smn1	93	47.287	Gadus_morhua
ENSSBOG00000011665	-	91	59.480	ENSGALG00000002430	SMN	95	57.621	Gallus_gallus
ENSSBOG00000011665	-	90	57.025	ENSGAFG00000009501	smn1	93	57.261	Gambusia_affinis
ENSSBOG00000011665	-	91	51.880	ENSGACG00000010584	smn1	91	52.692	Gasterosteus_aculeatus
ENSSBOG00000011665	-	96	63.636	ENSGAGG00000011374	-	97	62.950	Gopherus_agassizii
ENSSBOG00000011665	-	91	37.500	ENSGAGG00000013639	-	90	38.021	Gopherus_agassizii
ENSSBOG00000011665	-	97	94.505	ENSGGOG00000003872	-	100	93.902	Gorilla_gorilla
ENSSBOG00000011665	-	100	80.916	ENSGGOG00000026704	-	91	93.299	Gorilla_gorilla
ENSSBOG00000011665	-	91	53.261	ENSHBUG00000013987	smn1	94	55.474	Haplochromis_burtoni
ENSSBOG00000011665	-	99	78.231	ENSHGLG00000001018	-	96	80.919	Heterocephalus_glaber_female
ENSSBOG00000011665	-	99	78.547	ENSHGLG00000001905	-	99	78.547	Heterocephalus_glaber_female
ENSSBOG00000011665	-	99	78.231	ENSHGLG00100011252	-	96	80.919	Heterocephalus_glaber_male
ENSSBOG00000011665	-	96	78.136	ENSHGLG00100018676	-	100	78.136	Heterocephalus_glaber_male
ENSSBOG00000011665	-	84	82.609	ENSHCOG00000017136	smn1	87	50.579	Hippocampus_comes
ENSSBOG00000011665	-	91	51.504	ENSIPUG00000012580	smn1	83	50.362	Ictalurus_punctatus
ENSSBOG00000011665	-	93	86.813	ENSSTOG00000012288	-	100	85.921	Ictidomys_tridecemlineatus
ENSSBOG00000011665	-	66	61.494	ENSJJAG00000014853	-	89	64.571	Jaculus_jaculus
ENSSBOG00000011665	-	91	53.818	ENSKMAG00000007239	smn1	96	46.154	Kryptolebias_marmoratus
ENSSBOG00000011665	-	91	48.736	ENSLBEG00000022550	smn1	94	49.632	Labrus_bergylta
ENSSBOG00000011665	-	91	39.209	ENSLACG00000009808	-	90	35.766	Latimeria_chalumnae
ENSSBOG00000011665	-	90	56.504	ENSLOCG00000011339	smn1	93	57.613	Lepisosteus_oculatus
ENSSBOG00000011665	-	99	85.714	ENSLAFG00000003425	-	99	80.142	Loxodonta_africana
ENSSBOG00000011665	-	100	88.095	ENSMFAG00000008812	-	100	87.415	Macaca_fascicularis
ENSSBOG00000011665	-	100	96.703	ENSMFAG00000031523	SMN1	100	96.703	Macaca_fascicularis
ENSSBOG00000011665	-	100	96.703	ENSMMUG00000020214	SMN1	100	96.703	Macaca_mulatta
ENSSBOG00000011665	-	100	87.415	ENSMMUG00000030594	-	100	86.735	Macaca_mulatta
ENSSBOG00000011665	-	76	79.372	ENSMNEG00000036423	-	87	78.475	Macaca_nemestrina
ENSSBOG00000011665	-	100	96.703	ENSMNEG00000035094	-	100	96.703	Macaca_nemestrina
ENSSBOG00000011665	-	100	95.604	ENSMLEG00000041902	-	100	95.604	Mandrillus_leucophaeus
ENSSBOG00000011665	-	91	53.676	ENSMAMG00000011034	smn1	58	60.947	Mastacembelus_armatus
ENSSBOG00000011665	-	91	54.909	ENSMZEG00005013634	smn1	94	55.474	Maylandia_zebra
ENSSBOG00000011665	-	67	55.102	ENSMGAG00000008889	-	95	52.551	Meleagris_gallopavo
ENSSBOG00000011665	-	99	79.381	ENSMAUG00000010262	Smn1	96	79.856	Mesocricetus_auratus
ENSSBOG00000011665	-	99	86.813	ENSMICG00000034708	-	99	86.813	Microcebus_murinus
ENSSBOG00000011665	-	99	78.694	ENSMOCG00000017833	Smn1	97	78.214	Microtus_ochrogaster
ENSSBOG00000011665	-	91	50.758	ENSMMOG00000005504	smn1	93	52.590	Mola_mola
ENSSBOG00000011665	-	85	83.333	ENSMODG00000001436	-	95	70.107	Monodelphis_domestica
ENSSBOG00000011665	-	91	51.228	ENSMALG00000008025	smn1	94	53.455	Monopterus_albus
ENSSBOG00000011665	-	99	78.082	MGP_CAROLIEiJ_G0018836	Smn1	96	79.211	Mus_caroli
ENSSBOG00000011665	-	99	78.082	ENSMUSG00000021645	Smn1	96	79.211	Mus_musculus
ENSSBOG00000011665	-	99	80.220	MGP_PahariEiJ_G0015911	Smn1	96	77.978	Mus_pahari
ENSSBOG00000011665	-	99	77.397	MGP_SPRETEiJ_G0019718	Smn1	96	78.495	Mus_spretus
ENSSBOG00000011665	-	95	86.691	ENSMPUG00000014470	-	95	87.640	Mustela_putorius_furo
ENSSBOG00000011665	-	94	87.500	ENSMLUG00000010603	-	92	83.624	Myotis_lucifugus
ENSSBOG00000011665	-	99	80.069	ENSNGAG00000019833	Smn1	97	80.357	Nannospalax_galili
ENSSBOG00000011665	-	90	54.275	ENSNBRG00000023000	smn1	94	56.204	Neolamprologus_brichardi
ENSSBOG00000011665	-	100	93.893	ENSNLEG00000004454	-	100	93.893	Nomascus_leucogenys
ENSSBOG00000011665	-	77	64.000	ENSMEUG00000011393	-	99	66.079	Notamacropus_eugenii
ENSSBOG00000011665	-	81	87.500	ENSOPRG00000002015	-	100	79.447	Ochotona_princeps
ENSSBOG00000011665	-	95	80.212	ENSODEG00000015976	-	97	79.505	Octodon_degus
ENSSBOG00000011665	-	91	53.506	ENSONIG00000011799	smn1	95	53.676	Oreochromis_niloticus
ENSSBOG00000011665	-	77	90.698	ENSOANG00000001626	-	95	65.556	Ornithorhynchus_anatinus
ENSSBOG00000011665	-	94	86.957	ENSOCUG00000026649	-	97	81.119	Oryctolagus_cuniculus
ENSSBOG00000011665	-	99	78.621	ENSOCUG00000025183	-	96	75.000	Oryctolagus_cuniculus
ENSSBOG00000011665	-	99	82.353	ENSOCUG00000017097	-	99	82.353	Oryctolagus_cuniculus
ENSSBOG00000011665	-	60	61.392	ENSORLG00000010552	smn1	94	50.741	Oryzias_latipes
ENSSBOG00000011665	-	85	63.889	ENSORLG00020007936	smn1	93	56.098	Oryzias_latipes_hni
ENSSBOG00000011665	-	60	61.392	ENSORLG00015022425	smn1	94	50.923	Oryzias_latipes_hsok
ENSSBOG00000011665	-	58	63.576	ENSOMEG00000007824	smn1	54	63.057	Oryzias_melastigma
ENSSBOG00000011665	-	91	77.122	ENSOGAG00000031414	-	94	76.384	Otolemur_garnettii
ENSSBOG00000011665	-	93	80.220	ENSOARG00000005425	-	99	79.487	Ovis_aries
ENSSBOG00000011665	-	100	94.505	ENSPPAG00000036640	-	100	94.505	Pan_paniscus
ENSSBOG00000011665	-	99	87.308	ENSPPRG00000005575	-	96	90.000	Panthera_pardus
ENSSBOG00000011665	-	99	87.308	ENSPTIG00000007745	-	96	90.000	Panthera_tigris_altaica
ENSSBOG00000011665	-	100	94.505	ENSPTRG00000016955	-	100	94.505	Pan_troglodytes
ENSSBOG00000011665	-	100	95.604	ENSPANG00000013601	-	100	95.604	Papio_anubis
ENSSBOG00000011665	-	98	87.153	ENSPANG00000000253	-	98	86.458	Papio_anubis
ENSSBOG00000011665	-	76	91.892	ENSPKIG00000011096	smn1	93	54.918	Paramormyrops_kingsleyae
ENSSBOG00000011665	-	90	63.291	ENSPSIG00000014787	-	90	59.075	Pelodiscus_sinensis
ENSSBOG00000011665	-	91	50.730	ENSPMGG00000012285	smn1	94	51.341	Periophthalmus_magnuspinnatus
ENSSBOG00000011665	-	89	42.537	ENSPMAG00000005004	smn1	91	38.376	Petromyzon_marinus
ENSSBOG00000011665	-	87	81.667	ENSPCIG00000025764	-	97	70.463	Phascolarctos_cinereus
ENSSBOG00000011665	-	91	51.838	ENSPFOG00000007786	smn1	94	55.351	Poecilia_formosa
ENSSBOG00000011665	-	90	57.438	ENSPLAG00000012071	smn1	93	58.921	Poecilia_latipinna
ENSSBOG00000011665	-	90	57.025	ENSPMEG00000017085	smn1	93	58.506	Poecilia_mexicana
ENSSBOG00000011665	-	86	67.123	ENSPREG00000005824	smn1	93	58.921	Poecilia_reticulata
ENSSBOG00000011665	-	91	90.335	ENSPPYG00000015533	-	97	89.591	Pongo_abelii
ENSSBOG00000011665	-	83	62.385	ENSPPYG00000019189	-	99	63.761	Pongo_abelii
ENSSBOG00000011665	-	90	79.851	ENSPCAG00000004187	-	99	78.652	Procavia_capensis
ENSSBOG00000011665	-	85	91.525	ENSPCOG00000022307	-	99	75.877	Propithecus_coquereli
ENSSBOG00000011665	-	99	85.862	ENSPVAG00000005977	-	99	85.862	Pteropus_vampyrus
ENSSBOG00000011665	-	90	54.275	ENSPNYG00000014148	smn1	94	56.204	Pundamilia_nyererei
ENSSBOG00000011665	-	91	50.752	ENSPNAG00000014007	smn1	82	50.943	Pygocentrus_nattereri
ENSSBOG00000011665	-	99	77.740	ENSRNOG00000018067	Smn1	96	77.778	Rattus_norvegicus
ENSSBOG00000011665	-	93	90.110	ENSRBIG00000036775	-	95	79.061	Rhinopithecus_bieti
ENSSBOG00000011665	-	100	95.604	ENSRBIG00000037052	-	100	95.604	Rhinopithecus_bieti
ENSSBOG00000011665	-	100	80.657	ENSRROG00000031088	-	100	77.397	Rhinopithecus_roxellana
ENSSBOG00000011665	-	100	95.604	ENSRROG00000039399	-	100	95.604	Rhinopithecus_roxellana
ENSSBOG00000011665	-	99	68.276	ENSSHAG00000001499	-	96	70.677	Sarcophilus_harrisii
ENSSBOG00000011665	-	90	53.659	ENSSFOG00015015507	smn1	94	53.659	Scleropages_formosus
ENSSBOG00000011665	-	91	47.970	ENSSMAG00000007922	smn1	94	51.273	Scophthalmus_maximus
ENSSBOG00000011665	-	91	49.458	ENSSDUG00000018533	smn1	94	54.182	Seriola_dumerili
ENSSBOG00000011665	-	91	49.819	ENSSLDG00000021135	smn1	94	54.545	Seriola_lalandi_dorsalis
ENSSBOG00000011665	-	91	63.569	ENSSPUG00000000373	-	93	64.179	Sphenodon_punctatus
ENSSBOG00000011665	-	91	53.759	ENSSPAG00000004345	smn1	94	54.150	Stegastes_partitus
ENSSBOG00000011665	-	99	85.911	ENSSSCG00000016970	-	99	85.223	Sus_scrofa
ENSSBOG00000011665	-	97	64.567	ENSSSCG00000029127	-	96	64.919	Sus_scrofa
ENSSBOG00000011665	-	72	57.143	ENSSSCG00000033865	-	94	60.476	Sus_scrofa
ENSSBOG00000011665	-	94	58.007	ENSTGUG00000001548	-	96	55.109	Taeniopygia_guttata
ENSSBOG00000011665	-	91	48.315	ENSTRUG00000000736	smn	95	49.270	Takifugu_rubripes
ENSSBOG00000011665	-	92	44.523	ENSTNIG00000009892	smn1	95	49.638	Tetraodon_nigroviridis
ENSSBOG00000011665	-	70	86.957	ENSTBEG00000002399	-	89	86.957	Tupaia_belangeri
ENSSBOG00000011665	-	94	85.000	ENSTTRG00000005080	-	95	83.453	Tursiops_truncatus
ENSSBOG00000011665	-	70	86.957	ENSUAMG00000024947	-	67	86.957	Ursus_americanus
ENSSBOG00000011665	-	94	88.750	ENSUMAG00000007842	-	72	87.455	Ursus_maritimus
ENSSBOG00000011665	-	88	87.500	ENSVPAG00000009887	-	96	72.830	Vicugna_pacos
ENSSBOG00000011665	-	95	85.305	ENSVVUG00000006934	-	97	85.305	Vulpes_vulpes
ENSSBOG00000011665	-	90	66.667	ENSXETG00000018189	smn2	95	54.737	Xenopus_tropicalis
ENSSBOG00000011665	-	90	39.437	ENSXETG00000004912	-	79	58.730	Xenopus_tropicalis
ENSSBOG00000011665	-	91	57.377	ENSXMAG00000001521	smn1	94	57.613	Xiphophorus_maculatus