EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSBOG00000012310 (Gene tree)
Gene ID: 101051896
Gene Symbol: -
Alias: Hsh49|SAP49|SF3b49
Full Name: -
Gene Type: protein_coding
Species: Saimiri_boliviensis_boliviensis
Status: putative
Strand: Plus strand
Length: 9461 bases
Position: chrJH378257.1:3847401-3856861
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSBOP00000002367	RRM_1	PF00076.22	1e-38	1	2
ENSSBOP00000002367	RRM_1	PF00076.22	1e-38	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSBOT00000013606	-	4797	XM_003941980	ENSSBOP00000002367	424 (aa)	XP_003942029	A0A2K6S4R0

Gene Model

Click here to download ENSSBOG00000012310's gene model file

Pathways

Pathway ID	Pathway Name	Source
sbq03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSBOG00000012310's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSBOG00000012310	-	56	37.805	ENSSBOG00000020745	-	79	37.805
ENSSBOG00000012310	-	64	41.401	ENSSBOG00000025499	-	64	40.385
ENSSBOG00000012310	-	54	41.530	ENSSBOG00000016382	PABPC4L	97	41.530
ENSSBOG00000012310	-	70	36.612	ENSSBOG00000022216	PABPC1	63	31.293
ENSSBOG00000012310	-	100	73.113	ENSSBOG00000025174	-	73	79.876

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSBOG00000012310	-	100	99.764	ENSG00000143368	SF3B4	100	99.764	Homo_sapiens
ENSSBOG00000012310	-	57	96.250	ENSAPOG00000017647	sf3b4	77	82.132	Acanthochromis_polyacanthus
ENSSBOG00000012310	-	100	99.528	ENSAMEG00000010073	SF3B4	100	99.528	Ailuropoda_melanoleuca
ENSSBOG00000012310	-	57	96.250	ENSAOCG00000019801	sf3b4	77	82.132	Amphiprion_ocellaris
ENSSBOG00000012310	-	57	96.250	ENSAPEG00000010365	sf3b4	77	82.132	Amphiprion_percula
ENSSBOG00000012310	-	57	95.833	ENSATEG00000012844	sf3b4	76	81.250	Anabas_testudineus
ENSSBOG00000012310	-	62	95.817	ENSACAG00000010019	SF3B4	90	89.556	Anolis_carolinensis
ENSSBOG00000012310	-	100	99.764	ENSANAG00000031025	SF3B4	100	99.764	Aotus_nancymaae
ENSSBOG00000012310	-	57	95.417	ENSACLG00000014260	sf3b4	76	81.191	Astatotilapia_calliptera
ENSSBOG00000012310	-	57	95.833	ENSAMXG00000008282	sf3b4	60	95.833	Astyanax_mexicanus
ENSSBOG00000012310	-	100	99.528	ENSBTAG00000012495	SF3B4	100	99.528	Bos_taurus
ENSSBOG00000012310	-	91	96.094	ENSBTAG00000012793	-	88	98.039	Bos_taurus
ENSSBOG00000012310	-	90	82.474	ENSCJAG00000042351	SF3B4	87	82.474	Callithrix_jacchus
ENSSBOG00000012310	-	100	99.057	ENSCAFG00000011617	SF3B4	100	99.057	Canis_familiaris
ENSSBOG00000012310	-	100	99.057	ENSCAFG00020019775	SF3B4	100	99.057	Canis_lupus_dingo
ENSSBOG00000012310	-	100	99.528	ENSCHIG00000025663	-	100	99.528	Capra_hircus
ENSSBOG00000012310	-	100	99.764	ENSTSYG00000009295	SF3B4	100	99.764	Carlito_syrichta
ENSSBOG00000012310	-	100	99.292	ENSCPOG00000008267	SF3B4	100	99.292	Cavia_porcellus
ENSSBOG00000012310	-	95	85.821	ENSCCAG00000019823	-	77	86.503	Cebus_capucinus
ENSSBOG00000012310	-	100	86.985	ENSCCAG00000021751	-	69	92.901	Cebus_capucinus
ENSSBOG00000012310	-	100	99.764	ENSCATG00000033114	SF3B4	100	99.764	Cercocebus_atys
ENSSBOG00000012310	-	100	99.292	ENSCLAG00000015851	SF3B4	100	99.292	Chinchilla_lanigera
ENSSBOG00000012310	-	100	99.764	ENSCSAG00000018129	SF3B4	100	99.764	Chlorocebus_sabaeus
ENSSBOG00000012310	-	99	85.613	ENSCPBG00000008041	SF3B4	91	90.365	Chrysemys_picta_bellii
ENSSBOG00000012310	-	50	90.187	ENSCING00000002337	-	57	90.047	Ciona_intestinalis
ENSSBOG00000012310	-	100	99.764	ENSCANG00000035579	SF3B4	100	99.764	Colobus_angolensis_palliatus
ENSSBOG00000012310	-	100	99.292	ENSCGRG00001003590	Sf3b4	100	99.292	Cricetulus_griseus_chok1gshd
ENSSBOG00000012310	-	100	99.292	ENSCGRG00000016914	Sf3b4	100	99.292	Cricetulus_griseus_crigri
ENSSBOG00000012310	-	57	95.833	ENSDARG00000018574	sf3b4	77	80.564	Danio_rerio
ENSSBOG00000012310	-	98	96.635	ENSDNOG00000048908	-	99	96.635	Dasypus_novemcinctus
ENSSBOG00000012310	-	97	81.114	ENSDNOG00000037231	-	76	82.109	Dasypus_novemcinctus
ENSSBOG00000012310	-	100	99.528	ENSDORG00000016366	Sf3b4	100	99.528	Dipodomys_ordii
ENSSBOG00000012310	-	76	92.593	ENSETEG00000008963	SF3B4	76	92.593	Echinops_telfairi
ENSSBOG00000012310	-	100	99.528	ENSEASG00005001477	SF3B4	100	99.528	Equus_asinus_asinus
ENSSBOG00000012310	-	100	99.528	ENSECAG00000024737	SF3B4	100	99.528	Equus_caballus
ENSSBOG00000012310	-	100	99.528	ENSFCAG00000010106	SF3B4	100	99.528	Felis_catus
ENSSBOG00000012310	-	100	99.292	ENSFDAG00000009286	SF3B4	100	99.292	Fukomys_damarensis
ENSSBOG00000012310	-	54	96.522	ENSGMOG00000002519	sf3b4	67	96.930	Gadus_morhua
ENSSBOG00000012310	-	99	88.889	ENSGALG00000013352	SF3B4	90	89.295	Gallus_gallus
ENSSBOG00000012310	-	63	92.075	ENSGAFG00000010181	sf3b4	58	97.368	Gambusia_affinis
ENSSBOG00000012310	-	99	85.377	ENSGAGG00000025055	SF3B4	79	90.104	Gopherus_agassizii
ENSSBOG00000012310	-	100	99.764	ENSGGOG00000004761	SF3B4	100	99.764	Gorilla_gorilla
ENSSBOG00000012310	-	100	73.821	ENSGGOG00000038845	-	54	89.524	Gorilla_gorilla
ENSSBOG00000012310	-	57	95.417	ENSHBUG00000002028	sf3b4	76	81.191	Haplochromis_burtoni
ENSSBOG00000012310	-	100	99.292	ENSHGLG00000012360	SF3B4	100	99.292	Heterocephalus_glaber_female
ENSSBOG00000012310	-	100	98.113	ENSHGLG00100008533	SF3B4	100	98.113	Heterocephalus_glaber_male
ENSSBOG00000012310	-	50	99.061	ENSHCOG00000003014	sf3b4	57	96.053	Hippocampus_comes
ENSSBOG00000012310	-	57	96.250	ENSIPUG00000012242	Sf3b4	77	80.938	Ictalurus_punctatus
ENSSBOG00000012310	-	93	71.501	ENSSTOG00000029627	-	74	67.913	Ictidomys_tridecemlineatus
ENSSBOG00000012310	-	100	99.528	ENSSTOG00000000684	-	100	99.528	Ictidomys_tridecemlineatus
ENSSBOG00000012310	-	76	84.052	ENSJJAG00000022500	Sf3b4	95	84.052	Jaculus_jaculus
ENSSBOG00000012310	-	56	95.781	ENSKMAG00000008154	sf3b4	58	97.807	Kryptolebias_marmoratus
ENSSBOG00000012310	-	55	96.996	ENSLBEG00000026818	sf3b4	57	97.807	Labrus_bergylta
ENSSBOG00000012310	-	57	95.062	ENSLACG00000004436	SF3B4	87	85.000	Latimeria_chalumnae
ENSSBOG00000012310	-	57	95.473	ENSLOCG00000009048	sf3b4	75	84.953	Lepisosteus_oculatus
ENSSBOG00000012310	-	100	99.059	ENSLAFG00000008531	SF3B4	100	99.059	Loxodonta_africana
ENSSBOG00000012310	-	100	99.764	ENSMFAG00000042395	SF3B4	100	99.764	Macaca_fascicularis
ENSSBOG00000012310	-	92	71.066	ENSMFAG00000039067	-	57	80.841	Macaca_fascicularis
ENSSBOG00000012310	-	100	99.764	ENSMMUG00000007256	SF3B4	100	99.764	Macaca_mulatta
ENSSBOG00000012310	-	92	70.558	ENSMNEG00000031526	-	57	80.374	Macaca_nemestrina
ENSSBOG00000012310	-	100	99.764	ENSMNEG00000031839	SF3B4	100	99.764	Macaca_nemestrina
ENSSBOG00000012310	-	100	99.764	ENSMLEG00000038667	SF3B4	100	99.764	Mandrillus_leucophaeus
ENSSBOG00000012310	-	57	96.667	ENSMAMG00000014692	sf3b4	60	96.667	Mastacembelus_armatus
ENSSBOG00000012310	-	57	95.417	ENSMZEG00005026741	sf3b4	76	81.191	Maylandia_zebra
ENSSBOG00000012310	-	99	87.470	ENSMGAG00000000653	SF3B4	91	87.824	Meleagris_gallopavo
ENSSBOG00000012310	-	100	99.292	ENSMAUG00000015266	Sf3b4	100	99.292	Mesocricetus_auratus
ENSSBOG00000012310	-	100	99.528	ENSMICG00000044961	SF3B4	100	99.528	Microcebus_murinus
ENSSBOG00000012310	-	98	94.217	ENSMOCG00000014155	-	100	94.217	Microtus_ochrogaster
ENSSBOG00000012310	-	100	99.292	ENSMOCG00000013658	-	100	99.292	Microtus_ochrogaster
ENSSBOG00000012310	-	54	97.391	ENSMMOG00000018032	sf3b4	58	97.368	Mola_mola
ENSSBOG00000012310	-	100	98.821	ENSMODG00000018767	SF3B4	100	98.821	Monodelphis_domestica
ENSSBOG00000012310	-	54	97.357	ENSMALG00000006174	sf3b4	57	96.930	Monopterus_albus
ENSSBOG00000012310	-	100	99.057	MGP_CAROLIEiJ_G0025365	Sf3b4	100	99.057	Mus_caroli
ENSSBOG00000012310	-	100	99.292	ENSMUSG00000068856	Sf3b4	100	99.292	Mus_musculus
ENSSBOG00000012310	-	100	99.292	MGP_PahariEiJ_G0026809	Sf3b4	100	99.292	Mus_pahari
ENSSBOG00000012310	-	100	99.292	MGP_SPRETEiJ_G0026309	Sf3b4	100	99.292	Mus_spretus
ENSSBOG00000012310	-	100	99.528	ENSMPUG00000005563	SF3B4	100	99.528	Mustela_putorius_furo
ENSSBOG00000012310	-	100	99.292	ENSMLUG00000010789	SF3B4	100	99.292	Myotis_lucifugus
ENSSBOG00000012310	-	100	99.057	ENSNGAG00000016337	Sf3b4	100	99.057	Nannospalax_galili
ENSSBOG00000012310	-	57	95.833	ENSNBRG00000013865	sf3b4	76	81.505	Neolamprologus_brichardi
ENSSBOG00000012310	-	100	76.887	ENSNLEG00000000537	-	82	85.185	Nomascus_leucogenys
ENSSBOG00000012310	-	100	70.327	ENSNLEG00000009693	-	100	70.327	Nomascus_leucogenys
ENSSBOG00000012310	-	81	99.390	ENSMEUG00000003272	SF3B4	82	99.390	Notamacropus_eugenii
ENSSBOG00000012310	-	99	96.912	ENSOPRG00000010808	SF3B4	99	96.912	Ochotona_princeps
ENSSBOG00000012310	-	75	86.435	ENSODEG00000003597	-	79	86.435	Octodon_degus
ENSSBOG00000012310	-	88	72.654	ENSODEG00000008916	-	84	71.517	Octodon_degus
ENSSBOG00000012310	-	56	94.937	ENSONIG00000002730	sf3b4	57	97.368	Oreochromis_niloticus
ENSSBOG00000012310	-	99	57.674	ENSOANG00000004768	-	50	81.308	Ornithorhynchus_anatinus
ENSSBOG00000012310	-	100	99.528	ENSOCUG00000004614	SF3B4	100	99.528	Oryctolagus_cuniculus
ENSSBOG00000012310	-	55	96.552	ENSORLG00000003062	sf3b4	59	97.368	Oryzias_latipes
ENSSBOG00000012310	-	100	99.528	ENSOGAG00000006265	SF3B4	100	99.528	Otolemur_garnettii
ENSSBOG00000012310	-	100	99.528	ENSOARG00000020718	-	100	99.528	Ovis_aries
ENSSBOG00000012310	-	86	78.846	ENSOARG00000007368	-	77	79.688	Ovis_aries
ENSSBOG00000012310	-	100	81.840	ENSPPAG00000030024	-	78	82.716	Pan_paniscus
ENSSBOG00000012310	-	100	99.764	ENSPPAG00000040904	SF3B4	100	99.764	Pan_paniscus
ENSSBOG00000012310	-	100	99.528	ENSPPRG00000007384	SF3B4	100	99.528	Panthera_pardus
ENSSBOG00000012310	-	100	99.057	ENSPTIG00000014530	SF3B4	100	99.057	Panthera_tigris_altaica
ENSSBOG00000012310	-	100	79.009	ENSPTRG00000049727	-	59	90.254	Pan_troglodytes
ENSSBOG00000012310	-	100	99.764	ENSPTRG00000001243	SF3B4	100	99.764	Pan_troglodytes
ENSSBOG00000012310	-	100	99.764	ENSPANG00000005126	SF3B4	100	99.764	Papio_anubis
ENSSBOG00000012310	-	55	96.996	ENSPKIG00000020669	sf3b4	60	97.807	Paramormyrops_kingsleyae
ENSSBOG00000012310	-	100	99.292	ENSPEMG00000017568	Sf3b4	100	99.292	Peromyscus_maniculatus_bairdii
ENSSBOG00000012310	-	61	88.327	ENSPMAG00000007842	-	50	94.811	Petromyzon_marinus
ENSSBOG00000012310	-	100	98.821	ENSPCIG00000008765	SF3B4	100	98.821	Phascolarctos_cinereus
ENSSBOG00000012310	-	56	94.937	ENSPFOG00000005754	sf3b4	58	96.930	Poecilia_formosa
ENSSBOG00000012310	-	56	94.937	ENSPLAG00000001401	sf3b4	63	96.930	Poecilia_latipinna
ENSSBOG00000012310	-	56	94.937	ENSPREG00000011076	sf3b4	57	97.368	Poecilia_reticulata
ENSSBOG00000012310	-	63	96.154	ENSPCAG00000000392	SF3B4	63	96.154	Procavia_capensis
ENSSBOG00000012310	-	100	99.528	ENSPCOG00000015399	SF3B4	100	99.528	Propithecus_coquereli
ENSSBOG00000012310	-	100	99.528	ENSPVAG00000014171	SF3B4	100	99.528	Pteropus_vampyrus
ENSSBOG00000012310	-	57	95.417	ENSPNYG00000012700	sf3b4	76	81.191	Pundamilia_nyererei
ENSSBOG00000012310	-	57	96.250	ENSPNAG00000000686	sf3b4	79	80.625	Pygocentrus_nattereri
ENSSBOG00000012310	-	100	99.292	ENSRNOG00000021181	Sf3b4	100	99.292	Rattus_norvegicus
ENSSBOG00000012310	-	100	99.764	ENSRBIG00000043392	SF3B4	100	99.764	Rhinopithecus_bieti
ENSSBOG00000012310	-	100	99.764	ENSRROG00000029366	SF3B4	100	99.764	Rhinopithecus_roxellana
ENSSBOG00000012310	-	92	71.722	ENSRROG00000028213	-	91	67.914	Rhinopithecus_roxellana
ENSSBOG00000012310	-	100	96.226	ENSSHAG00000004043	SF3B4	100	98.425	Sarcophilus_harrisii
ENSSBOG00000012310	-	56	96.203	ENSSFOG00015008864	sf3b4	56	97.807	Scleropages_formosus
ENSSBOG00000012310	-	57	96.250	ENSSMAG00000006837	sf3b4	77	81.818	Scophthalmus_maximus
ENSSBOG00000012310	-	57	96.667	ENSSDUG00000012064	sf3b4	76	81.875	Seriola_dumerili
ENSSBOG00000012310	-	57	96.667	ENSSLDG00000014226	sf3b4	60	96.667	Seriola_lalandi_dorsalis
ENSSBOG00000012310	-	72	94.694	ENSSPUG00000001028	SF3B4	57	98.246	Sphenodon_punctatus
ENSSBOG00000012310	-	57	97.083	ENSSPAG00000019219	sf3b4	76	82.188	Stegastes_partitus
ENSSBOG00000012310	-	85	64.088	ENSSSCG00000039440	-	79	65.432	Sus_scrofa
ENSSBOG00000012310	-	100	99.292	ENSSSCG00000006665	-	100	99.292	Sus_scrofa
ENSSBOG00000012310	-	56	96.610	ENSTGUG00000004470	SF3B4	90	97.807	Taeniopygia_guttata
ENSSBOG00000012310	-	54	96.476	ENSTRUG00000004516	sf3b4	57	96.053	Takifugu_rubripes
ENSSBOG00000012310	-	54	96.522	ENSTNIG00000009156	sf3b4	58	96.930	Tetraodon_nigroviridis
ENSSBOG00000012310	-	100	99.528	ENSTTRG00000005217	SF3B4	100	99.528	Tursiops_truncatus
ENSSBOG00000012310	-	100	99.528	ENSUAMG00000022468	SF3B4	100	99.528	Ursus_americanus
ENSSBOG00000012310	-	100	98.585	ENSUMAG00000003802	SF3B4	100	98.585	Ursus_maritimus
ENSSBOG00000012310	-	97	99.515	ENSVPAG00000008152	SF3B4	100	99.515	Vicugna_pacos
ENSSBOG00000012310	-	99	92.344	ENSVVUG00000007732	-	100	92.344	Vulpes_vulpes
ENSSBOG00000012310	-	61	96.512	ENSVVUG00000022697	-	57	96.337	Vulpes_vulpes
ENSSBOG00000012310	-	54	96.957	ENSXCOG00000019895	sf3b4	58	97.368	Xiphophorus_couchianus
ENSSBOG00000012310	-	54	96.957	ENSXMAG00000003772	sf3b4	58	97.368	Xiphophorus_maculatus