EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSBOG00000016382 (Gene tree)
Gene ID: 101032739
Gene Symbol: PABPC4L
Alias: -
Full Name: poly(A) binding protein cytoplasmic 4 like
Gene Type: protein_coding
Species: Saimiri_boliviensis_boliviensis
Status: putative
Strand: Plus strand
Length: 1113 bases
Position: chrJH378129.1:16681204-16682316
Accession: 31955
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSBOP00000003344	RRM_5	PF13893.6	1.1e-13	1	3
ENSSBOP00000003344	RRM_5	PF13893.6	1.1e-13	2	3
ENSSBOP00000003344	RRM_5	PF13893.6	1.1e-13	3	3
ENSSBOP00000003344	RRM_1	PF00076.22	2.9e-85	1	4
ENSSBOP00000003344	RRM_1	PF00076.22	2.9e-85	2	4
ENSSBOP00000003344	RRM_1	PF00076.22	2.9e-85	3	4
ENSSBOP00000003344	RRM_1	PF00076.22	2.9e-85	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSBOT00000017932	PABPC4L-201	1113	XM_010338347	ENSSBOP00000003344	370 (aa)	XP_010336649	A0A2K6S7I4

Gene Model

Click here to download ENSSBOG00000016382's gene model file

Pathways

Pathway ID	Pathway Name	Source
sbq03013	RNA transport	KEGG
sbq03015	mRNA surveillance pathway	KEGG
sbq03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSBOG00000016382's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSBOG00000016382	PABPC4L	98	65.193	ENSSBOG00000021975	-	81	65.193
ENSSBOG00000016382	PABPC4L	98	69.972	ENSSBOG00000023677	PABPC3	61	69.972
ENSSBOG00000016382	PABPC4L	59	46.970	ENSSBOG00000035691	-	74	46.970
ENSSBOG00000016382	PABPC4L	99	68.145	ENSSBOG00000025499	-	75	68.145
ENSSBOG00000016382	PABPC4L	97	31.210	ENSSBOG00000028114	ELAVL2	86	31.210
ENSSBOG00000016382	PABPC4L	86	32.520	ENSSBOG00000028871	ELAVL1	82	32.520
ENSSBOG00000016382	PABPC4L	97	32.927	ENSSBOG00000021299	TRNAU1AP	86	37.500
ENSSBOG00000016382	PABPC4L	98	63.636	ENSSBOG00000020745	-	83	63.462
ENSSBOG00000016382	PABPC4L	97	41.530	ENSSBOG00000012310	-	54	41.530
ENSSBOG00000016382	PABPC4L	69	36.111	ENSSBOG00000020965	-	51	35.616
ENSSBOG00000016382	PABPC4L	98	69.972	ENSSBOG00000022216	PABPC1	60	69.972
ENSSBOG00000016382	PABPC4L	98	54.480	ENSSBOG00000026437	-	57	54.480
ENSSBOG00000016382	PABPC4L	55	45.455	ENSSBOG00000020829	-	93	45.455
ENSSBOG00000016382	PABPC4L	97	30.573	ENSSBOG00000022965	ELAVL4	87	30.380
ENSSBOG00000016382	PABPC4L	84	42.466	ENSSBOG00000005354	-	66	42.105
ENSSBOG00000016382	PABPC4L	85	37.838	ENSSBOG00000026502	-	91	37.838
ENSSBOG00000016382	PABPC4L	92	30.597	ENSSBOG00000027549	-	56	30.597
ENSSBOG00000016382	PABPC4L	71	30.508	ENSSBOG00000020034	-	64	30.508
ENSSBOG00000016382	PABPC4L	56	34.722	ENSSBOG00000021912	CELF1	58	34.722
ENSSBOG00000016382	PABPC4L	98	74.931	ENSSBOG00000026193	PABPC4	60	74.931
ENSSBOG00000016382	PABPC4L	98	63.085	ENSSBOG00000009532	-	61	63.085
ENSSBOG00000016382	PABPC4L	98	60.674	ENSSBOG00000008658	PABPC5	96	60.714

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSBOG00000016382	PABPC4L	100	95.135	ENSG00000254535	PABPC4L	100	95.135	Homo_sapiens
ENSSBOG00000016382	PABPC4L	100	97.027	ENSANAG00000017199	PABPC4L	87	97.027	Aotus_nancymaae
ENSSBOG00000016382	PABPC4L	99	86.721	ENSBTAG00000046902	PABPC4L	99	86.721	Bos_taurus
ENSSBOG00000016382	PABPC4L	100	97.027	ENSCJAG00000045332	PABPC4L	86	97.027	Callithrix_jacchus
ENSSBOG00000016382	PABPC4L	99	74.457	ENSCAFG00020019182	-	54	74.457	Canis_lupus_dingo
ENSSBOG00000016382	PABPC4L	99	86.721	ENSCHIG00000007231	PABPC4L	99	86.721	Capra_hircus
ENSSBOG00000016382	PABPC4L	98	80.299	ENSCAPG00000000555	PABPC4L	100	80.299	Cavia_aperea
ENSSBOG00000016382	PABPC4L	100	77.838	ENSCPOG00000033167	PABPC4L	100	77.838	Cavia_porcellus
ENSSBOG00000016382	PABPC4L	100	97.297	ENSCCAG00000031681	PABPC4L	86	97.297	Cebus_capucinus
ENSSBOG00000016382	PABPC4L	100	82.162	ENSCLAG00000017628	PABPC4L	100	82.162	Chinchilla_lanigera
ENSSBOG00000016382	PABPC4L	100	92.973	ENSCANG00000037677	PABPC4L	100	92.973	Colobus_angolensis_palliatus
ENSSBOG00000016382	PABPC4L	100	81.622	ENSCGRG00001002070	Pabpc4l	100	81.622	Cricetulus_griseus_chok1gshd
ENSSBOG00000016382	PABPC4L	100	81.622	ENSCGRG00000020086	Pabpc4l	100	81.622	Cricetulus_griseus_crigri
ENSSBOG00000016382	PABPC4L	100	88.919	ENSDNOG00000031077	PABPC4L	95	88.919	Dasypus_novemcinctus
ENSSBOG00000016382	PABPC4L	99	86.179	ENSEASG00005007883	PABPC4L	99	86.179	Equus_asinus_asinus
ENSSBOG00000016382	PABPC4L	99	86.450	ENSECAG00000031416	PABPC4L	99	86.450	Equus_caballus
ENSSBOG00000016382	PABPC4L	99	86.450	ENSFCAG00000028270	PABPC4L	99	86.450	Felis_catus
ENSSBOG00000016382	PABPC4L	99	82.656	ENSFDAG00000019606	PABPC4L	99	82.656	Fukomys_damarensis
ENSSBOG00000016382	PABPC4L	100	94.595	ENSGGOG00000024991	PABPC4L	100	94.595	Gorilla_gorilla
ENSSBOG00000016382	PABPC4L	99	83.198	ENSHGLG00000020104	PABPC4L	99	83.198	Heterocephalus_glaber_female
ENSSBOG00000016382	PABPC4L	99	83.198	ENSHGLG00100020648	PABPC4L	99	83.198	Heterocephalus_glaber_male
ENSSBOG00000016382	PABPC4L	100	85.984	ENSSTOG00000019472	PABPC4L	99	85.984	Ictidomys_tridecemlineatus
ENSSBOG00000016382	PABPC4L	99	81.572	ENSJJAG00000004090	Pabpc4l	99	81.572	Jaculus_jaculus
ENSSBOG00000016382	PABPC4L	100	81.892	ENSMAUG00000016313	Pabpc4l	100	81.892	Mesocricetus_auratus
ENSSBOG00000016382	PABPC4L	100	91.892	ENSMICG00000029683	PABPC4L	100	91.892	Microcebus_murinus
ENSSBOG00000016382	PABPC4L	100	83.243	ENSMOCG00000007551	Pabpc4l	100	83.243	Microtus_ochrogaster
ENSSBOG00000016382	PABPC4L	100	80.270	MGP_CAROLIEiJ_G0024968	Pabpc4l	100	80.270	Mus_caroli
ENSSBOG00000016382	PABPC4L	100	80.541	ENSMUSG00000090919	Pabpc4l	100	80.541	Mus_musculus
ENSSBOG00000016382	PABPC4L	100	80.811	MGP_PahariEiJ_G0026409	Pabpc4l	100	80.811	Mus_pahari
ENSSBOG00000016382	PABPC4L	100	80.000	MGP_SPRETEiJ_G0025903	Pabpc4l	100	80.000	Mus_spretus
ENSSBOG00000016382	PABPC4L	99	78.049	ENSMLUG00000008254	PABPC4L	99	78.049	Myotis_lucifugus
ENSSBOG00000016382	PABPC4L	100	85.676	ENSNGAG00000001502	Pabpc4l	100	85.676	Nannospalax_galili
ENSSBOG00000016382	PABPC4L	100	94.865	ENSNLEG00000019300	PABPC4L	100	94.865	Nomascus_leucogenys
ENSSBOG00000016382	PABPC4L	100	84.324	ENSOGAG00000026166	PABPC4L	100	84.324	Otolemur_garnettii
ENSSBOG00000016382	PABPC4L	99	94.427	ENSPPAG00000043745	PABPC4L	93	94.427	Pan_paniscus
ENSSBOG00000016382	PABPC4L	99	85.908	ENSPPRG00000018628	PABPC4L	99	85.908	Panthera_pardus
ENSSBOG00000016382	PABPC4L	99	86.450	ENSPTIG00000010106	PABPC4L	99	86.450	Panthera_tigris_altaica
ENSSBOG00000016382	PABPC4L	99	94.427	ENSPTRG00000045513	-	78	94.427	Pan_troglodytes
ENSSBOG00000016382	PABPC4L	100	82.162	ENSPEMG00000012565	Pabpc4l	100	82.162	Peromyscus_maniculatus_bairdii
ENSSBOG00000016382	PABPC4L	100	91.622	ENSPCOG00000025578	PABPC4L	100	91.622	Propithecus_coquereli
ENSSBOG00000016382	PABPC4L	100	80.541	ENSRNOG00000029749	Pabpc4l	100	80.541	Rattus_norvegicus
ENSSBOG00000016382	PABPC4L	100	92.703	ENSRBIG00000030229	PABPC4L	100	92.703	Rhinopithecus_bieti
ENSSBOG00000016382	PABPC4L	100	92.432	ENSRROG00000020367	PABPC4L	100	92.432	Rhinopithecus_roxellana
ENSSBOG00000016382	PABPC4L	99	80.217	ENSSSCG00000009067	PABPC4L	99	80.217	Sus_scrofa
ENSSBOG00000016382	PABPC4L	99	86.721	ENSUAMG00000001289	PABPC4L	99	86.721	Ursus_americanus
ENSSBOG00000016382	PABPC4L	99	86.721	ENSUMAG00000014887	PABPC4L	99	86.721	Ursus_maritimus
ENSSBOG00000016382	PABPC4L	87	77.301	ENSVVUG00000011060	-	74	77.301	Vulpes_vulpes