EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSBOG00000020012 (Gene tree)
Gene ID: 101035159
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Saimiri_boliviensis_boliviensis
Status: putative
Strand: Minus strand
Length: 131146 bases
Position: chrJH378144.1:4440140-4571285
Accession: 17854
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSBOP00000006281	Upf2	PF04050.14	6.6e-33	1	1
ENSSBOP00000006306	Upf2	PF04050.14	7.5e-33	1	1
ENSSBOP00000006306	MIF4G	PF02854.19	4.1e-81	1	3
ENSSBOP00000006306	MIF4G	PF02854.19	4.1e-81	2	3
ENSSBOP00000006306	MIF4G	PF02854.19	4.1e-81	3	3
ENSSBOP00000006281	MIF4G	PF02854.19	4.5e-81	1	3
ENSSBOP00000006281	MIF4G	PF02854.19	4.5e-81	2	3
ENSSBOP00000006281	MIF4G	PF02854.19	4.5e-81	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSBOT00000023029	UPF2-202	3720	-	ENSSBOP00000006306	1239 (aa)	-	A0A2K6SFY4
ENSSBOT00000023001	UPF2-201	5234	XM_003930615	ENSSBOP00000006281	1270 (aa)	XP_003930664	A0A2K6SFV8

Gene Model

Click here to download ENSSBOG00000020012's gene model file

Pathways

Pathway ID	Pathway Name	Source
sbq03013	RNA transport	KEGG
sbq03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSBOG00000020012's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSBOG00000020012	UPF2	100	98.821	ENSG00000151461	UPF2	100	98.821	Homo_sapiens
ENSSBOG00000020012	UPF2	99	77.404	ENSAPOG00000015837	UPF2	100	78.045	Acanthochromis_polyacanthus
ENSSBOG00000020012	UPF2	100	97.484	ENSAMEG00000004586	UPF2	100	97.484	Ailuropoda_melanoleuca
ENSSBOG00000020012	UPF2	99	81.406	ENSACIG00000018078	UPF2	100	81.875	Amphilophus_citrinellus
ENSSBOG00000020012	UPF2	100	81.513	ENSAOCG00000016766	UPF2	100	82.059	Amphiprion_ocellaris
ENSSBOG00000020012	UPF2	100	81.513	ENSAPEG00000019084	UPF2	100	82.059	Amphiprion_percula
ENSSBOG00000020012	UPF2	100	81.337	ENSATEG00000021677	UPF2	99	81.854	Anabas_testudineus
ENSSBOG00000020012	UPF2	100	86.546	ENSAPLG00000010287	UPF2	90	91.391	Anas_platyrhynchos
ENSSBOG00000020012	UPF2	100	90.952	ENSACAG00000009259	UPF2	100	90.637	Anolis_carolinensis
ENSSBOG00000020012	UPF2	99	89.300	ENSANAG00000028451	UPF2	99	86.782	Aotus_nancymaae
ENSSBOG00000020012	UPF2	100	80.733	ENSACLG00000012696	UPF2	100	82.137	Astatotilapia_calliptera
ENSSBOG00000020012	UPF2	99	82.330	ENSAMXG00000013700	UPF2	99	82.459	Astyanax_mexicanus
ENSSBOG00000020012	UPF2	100	97.406	ENSBTAG00000000288	UPF2	100	97.406	Bos_taurus
ENSSBOG00000020012	UPF2	100	99.213	ENSCJAG00000020685	UPF2	100	99.213	Callithrix_jacchus
ENSSBOG00000020012	UPF2	100	97.484	ENSCAFG00000004839	UPF2	100	97.484	Canis_familiaris
ENSSBOG00000020012	UPF2	99	96.166	ENSCAFG00020005882	UPF2	100	96.166	Canis_lupus_dingo
ENSSBOG00000020012	UPF2	100	97.484	ENSCHIG00000020359	UPF2	100	97.484	Capra_hircus
ENSSBOG00000020012	UPF2	100	97.563	ENSTSYG00000000935	UPF2	100	97.563	Carlito_syrichta
ENSSBOG00000020012	UPF2	91	86.071	ENSCAPG00000016658	UPF2	100	86.356	Cavia_aperea
ENSSBOG00000020012	UPF2	99	95.480	ENSCPOG00000008809	UPF2	99	95.480	Cavia_porcellus
ENSSBOG00000020012	UPF2	100	93.942	ENSCCAG00000035991	UPF2	100	93.942	Cebus_capucinus
ENSSBOG00000020012	UPF2	100	98.978	ENSCATG00000032679	UPF2	100	98.978	Cercocebus_atys
ENSSBOG00000020012	UPF2	100	97.010	ENSCLAG00000011434	UPF2	100	97.010	Chinchilla_lanigera
ENSSBOG00000020012	UPF2	100	99.057	ENSCSAG00000013372	UPF2	100	99.057	Chlorocebus_sabaeus
ENSSBOG00000020012	UPF2	87	99.330	ENSCHOG00000000422	UPF2	89	99.330	Choloepus_hoffmanni
ENSSBOG00000020012	UPF2	99	92.514	ENSCPBG00000027823	UPF2	100	92.120	Chrysemys_picta_bellii
ENSSBOG00000020012	UPF2	79	49.166	ENSCSAVG00000007772	-	79	50.191	Ciona_savignyi
ENSSBOG00000020012	UPF2	99	93.041	ENSCANG00000040396	UPF2	100	93.112	Colobus_angolensis_palliatus
ENSSBOG00000020012	UPF2	100	97.325	ENSCGRG00001019347	Upf2	100	97.325	Cricetulus_griseus_chok1gshd
ENSSBOG00000020012	UPF2	100	97.325	ENSCGRG00000017993	Upf2	100	97.325	Cricetulus_griseus_crigri
ENSSBOG00000020012	UPF2	91	80.879	ENSCSEG00000003520	UPF2	99	77.662	Cynoglossus_semilaevis
ENSSBOG00000020012	UPF2	99	81.147	ENSCVAG00000006167	UPF2	100	81.618	Cyprinodon_variegatus
ENSSBOG00000020012	UPF2	100	97.484	ENSDNOG00000018160	UPF2	100	97.484	Dasypus_novemcinctus
ENSSBOG00000020012	UPF2	100	96.853	ENSDORG00000002478	Upf2	100	96.853	Dipodomys_ordii
ENSSBOG00000020012	UPF2	89	36.251	FBgn0029992	Upf2	96	36.146	Drosophila_melanogaster
ENSSBOG00000020012	UPF2	72	100.000	ENSETEG00000011583	-	67	100.000	Echinops_telfairi
ENSSBOG00000020012	UPF2	66	72.483	ENSEBUG00000012448	-	87	72.483	Eptatretus_burgeri
ENSSBOG00000020012	UPF2	100	97.954	ENSEASG00005019274	UPF2	100	98.765	Equus_asinus_asinus
ENSSBOG00000020012	UPF2	100	98.033	ENSECAG00000017022	UPF2	100	98.033	Equus_caballus
ENSSBOG00000020012	UPF2	82	93.291	ENSEEUG00000007819	UPF2	82	92.971	Erinaceus_europaeus
ENSSBOG00000020012	UPF2	99	80.796	ENSELUG00000012014	UPF2	100	80.886	Esox_lucius
ENSSBOG00000020012	UPF2	100	99.448	ENSFCAG00000005785	UPF2	100	97.327	Felis_catus
ENSSBOG00000020012	UPF2	100	91.503	ENSFALG00000001889	UPF2	98	91.975	Ficedula_albicollis
ENSSBOG00000020012	UPF2	100	97.323	ENSFDAG00000014348	UPF2	100	97.323	Fukomys_damarensis
ENSSBOG00000020012	UPF2	99	81.383	ENSFHEG00000009826	UPF2	100	81.983	Fundulus_heteroclitus
ENSSBOG00000020012	UPF2	91	83.838	ENSGMOG00000005557	UPF2	100	79.688	Gadus_morhua
ENSSBOG00000020012	UPF2	100	91.667	ENSGALG00000033772	UPF2	100	92.138	Gallus_gallus
ENSSBOG00000020012	UPF2	100	79.329	ENSGAFG00000020867	UPF2	100	81.045	Gambusia_affinis
ENSSBOG00000020012	UPF2	90	83.952	ENSGACG00000001080	UPF2	100	81.875	Gasterosteus_aculeatus
ENSSBOG00000020012	UPF2	100	92.054	ENSGAGG00000002700	UPF2	100	91.896	Gopherus_agassizii
ENSSBOG00000020012	UPF2	100	98.899	ENSGGOG00000001479	UPF2	100	98.899	Gorilla_gorilla
ENSSBOG00000020012	UPF2	100	80.577	ENSHBUG00000004249	UPF2	100	82.109	Haplochromis_burtoni
ENSSBOG00000020012	UPF2	99	86.299	ENSHGLG00000003822	-	99	84.634	Heterocephalus_glaber_female
ENSSBOG00000020012	UPF2	100	97.246	ENSHGLG00000015176	-	100	97.246	Heterocephalus_glaber_female
ENSSBOG00000020012	UPF2	99	94.322	ENSHGLG00100010036	UPF2	100	94.322	Heterocephalus_glaber_male
ENSSBOG00000020012	UPF2	100	79.720	ENSHCOG00000004025	UPF2	99	79.409	Hippocampus_comes
ENSSBOG00000020012	UPF2	100	81.577	ENSIPUG00000015524	UPF2	100	81.562	Ictalurus_punctatus
ENSSBOG00000020012	UPF2	100	97.325	ENSSTOG00000013075	UPF2	100	97.325	Ictidomys_tridecemlineatus
ENSSBOG00000020012	UPF2	100	95.437	ENSJJAG00000004913	Upf2	100	94.961	Jaculus_jaculus
ENSSBOG00000020012	UPF2	99	81.128	ENSKMAG00000001071	UPF2	100	81.711	Kryptolebias_marmoratus
ENSSBOG00000020012	UPF2	100	80.808	ENSLBEG00000016394	-	99	82.335	Labrus_bergylta
ENSSBOG00000020012	UPF2	82	79.862	ENSLBEG00000000728	-	93	82.024	Labrus_bergylta
ENSSBOG00000020012	UPF2	99	78.622	ENSLACG00000015945	UPF2	94	93.182	Latimeria_chalumnae
ENSSBOG00000020012	UPF2	99	84.870	ENSLOCG00000015698	UPF2	100	85.185	Lepisosteus_oculatus
ENSSBOG00000020012	UPF2	100	98.899	ENSMFAG00000043865	UPF2	100	98.899	Macaca_fascicularis
ENSSBOG00000020012	UPF2	100	98.899	ENSMMUG00000008241	UPF2	100	98.899	Macaca_mulatta
ENSSBOG00000020012	UPF2	83	98.439	ENSMNEG00000008062	UPF2	100	98.439	Macaca_nemestrina
ENSSBOG00000020012	UPF2	99	96.910	ENSMLEG00000036120	UPF2	100	99.517	Mandrillus_leucophaeus
ENSSBOG00000020012	UPF2	100	81.026	ENSMAMG00000018276	UPF2	100	81.776	Mastacembelus_armatus
ENSSBOG00000020012	UPF2	100	80.733	ENSMZEG00005021595	UPF2	100	82.137	Maylandia_zebra
ENSSBOG00000020012	UPF2	99	90.787	ENSMGAG00000004573	UPF2	99	91.496	Meleagris_gallopavo
ENSSBOG00000020012	UPF2	100	95.122	ENSMAUG00000016512	Upf2	100	95.122	Mesocricetus_auratus
ENSSBOG00000020012	UPF2	95	99.490	ENSMICG00000001716	UPF2	99	99.490	Microcebus_murinus
ENSSBOG00000020012	UPF2	100	96.772	ENSMOCG00000008263	Upf2	100	96.772	Microtus_ochrogaster
ENSSBOG00000020012	UPF2	99	79.791	ENSMMOG00000006528	UPF2	100	80.513	Mola_mola
ENSSBOG00000020012	UPF2	100	93.627	ENSMODG00000016794	UPF2	100	94.099	Monodelphis_domestica
ENSSBOG00000020012	UPF2	99	81.001	ENSMALG00000002663	UPF2	100	81.441	Monopterus_albus
ENSSBOG00000020012	UPF2	100	96.932	MGP_CAROLIEiJ_G0023157	Upf2	100	98.473	Mus_caroli
ENSSBOG00000020012	UPF2	100	96.932	ENSMUSG00000043241	Upf2	100	96.932	Mus_musculus
ENSSBOG00000020012	UPF2	100	96.538	MGP_PahariEiJ_G0019217	Upf2	100	97.519	Mus_pahari
ENSSBOG00000020012	UPF2	100	97.168	MGP_SPRETEiJ_G0024075	Upf2	100	97.901	Mus_spretus
ENSSBOG00000020012	UPF2	100	97.484	ENSMPUG00000001064	UPF2	100	97.484	Mustela_putorius_furo
ENSSBOG00000020012	UPF2	99	96.939	ENSMLUG00000000228	UPF2	100	96.939	Myotis_lucifugus
ENSSBOG00000020012	UPF2	100	80.733	ENSNBRG00000013629	UPF2	100	82.137	Neolamprologus_brichardi
ENSSBOG00000020012	UPF2	100	98.742	ENSNLEG00000012058	UPF2	100	98.742	Nomascus_leucogenys
ENSSBOG00000020012	UPF2	58	97.927	ENSMEUG00000002180	-	55	97.927	Notamacropus_eugenii
ENSSBOG00000020012	UPF2	76	100.000	ENSOPRG00000006801	-	78	100.000	Ochotona_princeps
ENSSBOG00000020012	UPF2	100	96.538	ENSODEG00000001290	UPF2	100	96.223	Octodon_degus
ENSSBOG00000020012	UPF2	100	80.811	ENSONIG00000017991	UPF2	100	82.215	Oreochromis_niloticus
ENSSBOG00000020012	UPF2	99	96.865	ENSOCUG00000006230	UPF2	100	96.865	Oryctolagus_cuniculus
ENSSBOG00000020012	UPF2	100	80.949	ENSORLG00000017189	UPF2	100	81.279	Oryzias_latipes
ENSSBOG00000020012	UPF2	100	81.026	ENSORLG00020005969	UPF2	100	81.435	Oryzias_latipes_hni
ENSSBOG00000020012	UPF2	100	80.949	ENSORLG00015005713	UPF2	100	81.279	Oryzias_latipes_hsok
ENSSBOG00000020012	UPF2	99	77.163	ENSOMEG00000023420	UPF2	98	78.186	Oryzias_melastigma
ENSSBOG00000020012	UPF2	100	98.192	ENSOGAG00000005796	UPF2	100	98.192	Otolemur_garnettii
ENSSBOG00000020012	UPF2	100	97.331	ENSOARG00000014587	UPF2	100	97.331	Ovis_aries
ENSSBOG00000020012	UPF2	99	96.117	ENSPPAG00000037953	UPF2	100	96.117	Pan_paniscus
ENSSBOG00000020012	UPF2	100	97.327	ENSPPRG00000000690	UPF2	100	97.327	Panthera_pardus
ENSSBOG00000020012	UPF2	100	97.327	ENSPTIG00000008867	UPF2	100	97.327	Panthera_tigris_altaica
ENSSBOG00000020012	UPF2	100	98.899	ENSPTRG00000002291	UPF2	100	98.899	Pan_troglodytes
ENSSBOG00000020012	UPF2	100	98.899	ENSPANG00000023399	UPF2	100	98.899	Papio_anubis
ENSSBOG00000020012	UPF2	100	80.889	ENSPKIG00000025502	UPF2	100	81.591	Paramormyrops_kingsleyae
ENSSBOG00000020012	UPF2	61	90.173	ENSPSIG00000015158	UPF2	95	90.173	Pelodiscus_sinensis
ENSSBOG00000020012	UPF2	99	78.397	ENSPMGG00000005259	UPF2	100	79.811	Periophthalmus_magnuspinnatus
ENSSBOG00000020012	UPF2	93	91.570	ENSPEMG00000015731	Upf2	99	90.087	Peromyscus_maniculatus_bairdii
ENSSBOG00000020012	UPF2	100	93.548	ENSPCIG00000006656	UPF2	100	94.020	Phascolarctos_cinereus
ENSSBOG00000020012	UPF2	100	79.719	ENSPFOG00000017118	UPF2	100	81.669	Poecilia_formosa
ENSSBOG00000020012	UPF2	100	79.719	ENSPLAG00000005094	UPF2	100	81.669	Poecilia_latipinna
ENSSBOG00000020012	UPF2	100	79.719	ENSPMEG00000017009	UPF2	100	81.669	Poecilia_mexicana
ENSSBOG00000020012	UPF2	99	79.561	ENSPREG00000021880	UPF2	100	81.911	Poecilia_reticulata
ENSSBOG00000020012	UPF2	66	99.402	ENSPPYG00000002089	-	100	99.402	Pongo_abelii
ENSSBOG00000020012	UPF2	90	87.603	ENSPCAG00000000684	UPF2	90	87.328	Procavia_capensis
ENSSBOG00000020012	UPF2	99	98.138	ENSPCOG00000021656	UPF2	100	98.138	Propithecus_coquereli
ENSSBOG00000020012	UPF2	100	89.317	ENSPVAG00000017286	UPF2	100	89.552	Pteropus_vampyrus
ENSSBOG00000020012	UPF2	99	78.281	ENSPNYG00000017096	UPF2	100	79.688	Pundamilia_nyererei
ENSSBOG00000020012	UPF2	100	82.748	ENSPNAG00000009357	UPF2	100	82.904	Pygocentrus_nattereri
ENSSBOG00000020012	UPF2	99	90.338	ENSRNOG00000023593	Upf2	100	100.000	Rattus_norvegicus
ENSSBOG00000020012	UPF2	99	97.951	ENSRBIG00000037780	UPF2	100	97.951	Rhinopithecus_bieti
ENSSBOG00000020012	UPF2	100	98.977	ENSRROG00000043547	UPF2	100	98.977	Rhinopithecus_roxellana
ENSSBOG00000020012	UPF2	100	80.359	ENSSFOG00015023788	upf2	100	82.151	Scleropages_formosus
ENSSBOG00000020012	UPF2	90	82.827	ENSSMAG00000007637	UPF2	100	79.829	Scophthalmus_maximus
ENSSBOG00000020012	UPF2	100	81.591	ENSSDUG00000017244	UPF2	100	81.401	Seriola_dumerili
ENSSBOG00000020012	UPF2	99	80.482	ENSSLDG00000016866	UPF2	100	80.895	Seriola_lalandi_dorsalis
ENSSBOG00000020012	UPF2	100	93.868	ENSSARG00000008615	UPF2	100	94.178	Sorex_araneus
ENSSBOG00000020012	UPF2	99	89.213	ENSSPUG00000014544	UPF2	99	88.819	Sphenodon_punctatus
ENSSBOG00000020012	UPF2	68	98.849	ENSSSCG00000011117	-	100	98.849	Sus_scrofa
ENSSBOG00000020012	UPF2	99	92.114	ENSTGUG00000002163	-	100	92.035	Taeniopygia_guttata
ENSSBOG00000020012	UPF2	100	80.841	ENSTRUG00000007519	UPF2	99	81.591	Takifugu_rubripes
ENSSBOG00000020012	UPF2	100	80.016	ENSTNIG00000004453	UPF2	100	79.907	Tetraodon_nigroviridis
ENSSBOG00000020012	UPF2	93	90.178	ENSTBEG00000012679	UPF2	93	89.746	Tupaia_belangeri
ENSSBOG00000020012	UPF2	100	97.246	ENSTTRG00000016388	UPF2	100	97.246	Tursiops_truncatus
ENSSBOG00000020012	UPF2	95	100.000	ENSUAMG00000023560	UPF2	99	100.000	Ursus_americanus
ENSSBOG00000020012	UPF2	100	97.720	ENSUMAG00000012953	UPF2	95	97.720	Ursus_maritimus
ENSSBOG00000020012	UPF2	87	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSSBOG00000020012	UPF2	100	97.406	ENSVVUG00000006166	UPF2	100	97.406	Vulpes_vulpes
ENSSBOG00000020012	UPF2	100	84.314	ENSXETG00000033103	UPF2	94	92.571	Xenopus_tropicalis
ENSSBOG00000020012	UPF2	99	79.219	ENSXCOG00000011604	UPF2	100	81.328	Xiphophorus_couchianus
ENSSBOG00000020012	UPF2	100	79.485	ENSXMAG00000017209	UPF2	100	81.357	Xiphophorus_maculatus