EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSBOG00000020014 (Gene tree)
Gene ID: -
Gene Symbol: SLIRP
Alias: C14orf156|DC50
Full Name: SRA stem-loop interacting RNA binding protein
Gene Type: protein_coding
Species: Saimiri_boliviensis_boliviensis
Status: putative
Strand: Plus strand
Length: 57405 bases
Position: chrJH378115.1:35666077-35723481
Accession: 20495
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSBOP00000006141	RRM_1	PF00076.22	8.5e-14	1	1
ENSSBOP00000006147	RRM_1	PF00076.22	8.5e-14	1	1
ENSSBOP00000006134	RRM_1	PF00076.22	1.8e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSBOT00000022854	SLIRP-202	297	-	ENSSBOP00000006141	98 (aa)	-	A0A2K6SFG6
ENSSBOT00000022860	SLIRP-203	279	-	ENSSBOP00000006147	93 (aa)	-	A0A2K6SFK1
ENSSBOT00000022847	SLIRP-201	375	-	ENSSBOP00000006134	125 (aa)	-	A0A2K6SFI2

Gene Model

Click here to download ENSSBOG00000020014's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSBOG00000020014's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSBOG00000020014	SLIRP	73	32.353	ENSSBOG00000031053	RBM38	65	31.429
ENSSBOG00000020014	SLIRP	85	32.558	ENSSBOG00000026425	MSI2	57	33.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSBOG00000020014	SLIRP	88	83.636	ENSG00000119705	SLIRP	100	82.258	Homo_sapiens
ENSSBOG00000020014	SLIRP	72	59.701	ENSAPOG00000001298	slirp	73	56.164	Acanthochromis_polyacanthus
ENSSBOG00000020014	SLIRP	96	76.404	ENSAMEG00000003975	SLIRP	100	74.725	Ailuropoda_melanoleuca
ENSSBOG00000020014	SLIRP	78	56.000	ENSACIG00000023083	slirp	80	53.086	Amphilophus_citrinellus
ENSSBOG00000020014	SLIRP	78	58.667	ENSAOCG00000006342	slirp	82	55.556	Amphiprion_ocellaris
ENSSBOG00000020014	SLIRP	78	58.667	ENSAPEG00000015917	slirp	82	55.556	Amphiprion_percula
ENSSBOG00000020014	SLIRP	78	58.667	ENSAPEG00000015719	-	83	55.556	Amphiprion_percula
ENSSBOG00000020014	SLIRP	72	59.701	ENSATEG00000013525	slirp	76	55.263	Anabas_testudineus
ENSSBOG00000020014	SLIRP	70	61.538	ENSAMXG00000018693	slirp	65	61.538	Astyanax_mexicanus
ENSSBOG00000020014	SLIRP	100	90.323	ENSCJAG00000016946	SLIRP	100	90.323	Callithrix_jacchus
ENSSBOG00000020014	SLIRP	95	77.273	ENSCAFG00020015876	-	79	77.273	Canis_lupus_dingo
ENSSBOG00000020014	SLIRP	99	87.097	ENSCCAG00000030130	SLIRP	100	87.097	Cebus_capucinus
ENSSBOG00000020014	SLIRP	99	82.609	ENSCATG00000036327	SLIRP	99	82.609	Cercocebus_atys
ENSSBOG00000020014	SLIRP	84	83.333	ENSCSAG00000011736	SLIRP	82	82.022	Chlorocebus_sabaeus
ENSSBOG00000020014	SLIRP	85	54.321	ENSCPBG00000026327	SLIRP	87	52.326	Chrysemys_picta_bellii
ENSSBOG00000020014	SLIRP	82	88.158	ENSCANG00000032892	SLIRP	100	80.612	Colobus_angolensis_palliatus
ENSSBOG00000020014	SLIRP	95	76.136	ENSCGRG00001024068	Slirp	79	76.136	Cricetulus_griseus_chok1gshd
ENSSBOG00000020014	SLIRP	95	76.136	ENSCGRG00000017440	Slirp	79	76.136	Cricetulus_griseus_crigri
ENSSBOG00000020014	SLIRP	82	53.750	ENSCSEG00000015766	slirp	87	49.412	Cynoglossus_semilaevis
ENSSBOG00000020014	SLIRP	73	63.235	ENSCVAG00000012504	slirp	76	57.143	Cyprinodon_variegatus
ENSSBOG00000020014	SLIRP	73	60.294	ENSDARG00000097753	slirp	80	54.444	Danio_rerio
ENSSBOG00000020014	SLIRP	80	72.973	ENSDNOG00000007721	SLIRP	80	69.318	Dasypus_novemcinctus
ENSSBOG00000020014	SLIRP	95	71.591	ENSDORG00000012379	Slirp	79	71.591	Dipodomys_ordii
ENSSBOG00000020014	SLIRP	83	71.429	ENSETEG00000010345	SLIRP	81	69.318	Echinops_telfairi
ENSSBOG00000020014	SLIRP	95	78.409	ENSEASG00005020193	SLIRP	79	78.409	Equus_asinus_asinus
ENSSBOG00000020014	SLIRP	87	65.432	ENSEEUG00000007257	SLIRP	80	65.432	Erinaceus_europaeus
ENSSBOG00000020014	SLIRP	70	58.462	ENSELUG00000016800	slirp	64	58.462	Esox_lucius
ENSSBOG00000020014	SLIRP	97	83.333	ENSFCAG00000036326	SLIRP	97	81.250	Felis_catus
ENSSBOG00000020014	SLIRP	72	55.224	ENSFALG00000012583	SLIRP	87	48.913	Ficedula_albicollis
ENSSBOG00000020014	SLIRP	96	68.085	ENSFDAG00000008347	SLIRP	83	68.085	Fukomys_damarensis
ENSSBOG00000020014	SLIRP	62	60.345	ENSFHEG00000004709	slirp	63	60.345	Fundulus_heteroclitus
ENSSBOG00000020014	SLIRP	72	59.701	ENSGMOG00000016948	slirp	65	58.824	Gadus_morhua
ENSSBOG00000020014	SLIRP	89	50.575	ENSGALG00000031238	SLIRP	89	51.765	Gallus_gallus
ENSSBOG00000020014	SLIRP	75	62.857	ENSGAFG00000010998	slirp	70	62.857	Gambusia_affinis
ENSSBOG00000020014	SLIRP	73	58.824	ENSGACG00000020137	slirp	83	57.746	Gasterosteus_aculeatus
ENSSBOG00000020014	SLIRP	85	61.728	ENSGAGG00000009953	SLIRP	56	61.728	Gopherus_agassizii
ENSSBOG00000020014	SLIRP	88	83.636	ENSGGOG00000011059	-	100	82.258	Gorilla_gorilla
ENSSBOG00000020014	SLIRP	95	65.909	ENSHGLG00000018491	SLIRP	79	65.909	Heterocephalus_glaber_female
ENSSBOG00000020014	SLIRP	95	65.909	ENSHGLG00100014153	SLIRP	79	65.909	Heterocephalus_glaber_male
ENSSBOG00000020014	SLIRP	80	63.158	ENSHCOG00000006795	slirp	77	63.158	Hippocampus_comes
ENSSBOG00000020014	SLIRP	70	58.462	ENSIPUG00000010214	SLIRP	65	58.462	Ictalurus_punctatus
ENSSBOG00000020014	SLIRP	85	78.481	ENSSTOG00000034316	SLIRP	81	77.778	Ictidomys_tridecemlineatus
ENSSBOG00000020014	SLIRP	78	50.667	ENSKMAG00000002038	slirp	79	48.780	Kryptolebias_marmoratus
ENSSBOG00000020014	SLIRP	72	58.209	ENSLBEG00000007564	slirp	73	54.795	Labrus_bergylta
ENSSBOG00000020014	SLIRP	80	56.579	ENSLACG00000013434	SLIRP	83	52.326	Latimeria_chalumnae
ENSSBOG00000020014	SLIRP	87	85.185	ENSMFAG00000042960	SLIRP	99	82.609	Macaca_fascicularis
ENSSBOG00000020014	SLIRP	87	85.185	ENSMMUG00000029256	SLIRP	99	83.696	Macaca_mulatta
ENSSBOG00000020014	SLIRP	87	85.185	ENSMNEG00000028921	SLIRP	99	82.609	Macaca_nemestrina
ENSSBOG00000020014	SLIRP	99	82.609	ENSMLEG00000043644	SLIRP	100	79.592	Mandrillus_leucophaeus
ENSSBOG00000020014	SLIRP	78	57.333	ENSMZEG00005004617	slirp	82	54.321	Maylandia_zebra
ENSSBOG00000020014	SLIRP	95	75.000	ENSMAUG00000003857	Slirp	79	75.000	Mesocricetus_auratus
ENSSBOG00000020014	SLIRP	96	78.652	ENSMICG00000012080	SLIRP	99	74.797	Microcebus_murinus
ENSSBOG00000020014	SLIRP	95	77.273	ENSMOCG00000016019	Slirp	87	77.273	Microtus_ochrogaster
ENSSBOG00000020014	SLIRP	80	55.263	ENSMMOG00000018268	slirp	82	52.439	Mola_mola
ENSSBOG00000020014	SLIRP	74	63.768	ENSMODG00000005207	-	97	63.768	Monodelphis_domestica
ENSSBOG00000020014	SLIRP	73	57.353	ENSMALG00000012581	slirp	69	57.353	Monopterus_albus
ENSSBOG00000020014	SLIRP	95	76.136	MGP_CAROLIEiJ_G0017995	Slirp	81	76.136	Mus_caroli
ENSSBOG00000020014	SLIRP	95	77.273	ENSMUSG00000021040	Slirp	92	75.824	Mus_musculus
ENSSBOG00000020014	SLIRP	95	77.273	MGP_SPRETEiJ_G0018840	Slirp	79	77.273	Mus_spretus
ENSSBOG00000020014	SLIRP	83	76.623	ENSMLUG00000029544	-	79	72.727	Myotis_lucifugus
ENSSBOG00000020014	SLIRP	78	78.082	ENSMLUG00000024998	-	79	73.864	Myotis_lucifugus
ENSSBOG00000020014	SLIRP	84	73.750	ENSNGAG00000016363	Slirp	87	67.778	Nannospalax_galili
ENSSBOG00000020014	SLIRP	90	73.810	ENSNLEG00000027238	-	95	73.810	Nomascus_leucogenys
ENSSBOG00000020014	SLIRP	99	80.645	ENSNLEG00000032459	-	100	80.645	Nomascus_leucogenys
ENSSBOG00000020014	SLIRP	96	69.663	ENSODEG00000012580	SLIRP	99	69.231	Octodon_degus
ENSSBOG00000020014	SLIRP	78	57.333	ENSONIG00000011692	slirp	82	54.321	Oreochromis_niloticus
ENSSBOG00000020014	SLIRP	74	73.913	ENSOANG00000022366	SLIRP	81	62.222	Ornithorhynchus_anatinus
ENSSBOG00000020014	SLIRP	72	59.701	ENSORLG00000010761	slirp	52	59.701	Oryzias_latipes
ENSSBOG00000020014	SLIRP	72	61.194	ENSORLG00020022188	slirp	73	57.534	Oryzias_latipes_hni
ENSSBOG00000020014	SLIRP	72	59.701	ENSORLG00015020171	slirp	72	56.164	Oryzias_latipes_hsok
ENSSBOG00000020014	SLIRP	72	61.194	ENSOMEG00000019321	slirp	73	57.534	Oryzias_melastigma
ENSSBOG00000020014	SLIRP	88	83.636	ENSPPAG00000040710	-	100	82.258	Pan_paniscus
ENSSBOG00000020014	SLIRP	97	83.333	ENSPPRG00000014350	SLIRP	97	82.292	Panthera_pardus
ENSSBOG00000020014	SLIRP	97	83.333	ENSPTIG00000014196	SLIRP	97	82.292	Panthera_tigris_altaica
ENSSBOG00000020014	SLIRP	88	83.636	ENSPTRG00000030691	SLIRP	100	82.258	Pan_troglodytes
ENSSBOG00000020014	SLIRP	99	83.696	ENSPANG00000026323	SLIRP	99	83.696	Papio_anubis
ENSSBOG00000020014	SLIRP	62	62.069	ENSPKIG00000008831	slirp	63	57.812	Paramormyrops_kingsleyae
ENSSBOG00000020014	SLIRP	72	65.672	ENSPMGG00000010541	slirp	87	59.211	Periophthalmus_magnuspinnatus
ENSSBOG00000020014	SLIRP	83	80.519	ENSPEMG00000013234	Slirp	93	72.632	Peromyscus_maniculatus_bairdii
ENSSBOG00000020014	SLIRP	65	53.333	ENSPMAG00000009355	slirp	67	53.333	Petromyzon_marinus
ENSSBOG00000020014	SLIRP	85	61.728	ENSPCIG00000026842	-	87	61.728	Phascolarctos_cinereus
ENSSBOG00000020014	SLIRP	72	61.194	ENSPFOG00000006758	slirp	83	53.571	Poecilia_formosa
ENSSBOG00000020014	SLIRP	72	61.194	ENSPLAG00000011140	slirp	70	58.571	Poecilia_latipinna
ENSSBOG00000020014	SLIRP	72	61.194	ENSPMEG00000019535	slirp	83	53.571	Poecilia_mexicana
ENSSBOG00000020014	SLIRP	73	60.294	ENSPREG00000011673	slirp	70	58.571	Poecilia_reticulata
ENSSBOG00000020014	SLIRP	83	75.325	ENSPPYG00000006030	SLIRP	81	73.864	Pongo_abelii
ENSSBOG00000020014	SLIRP	96	74.157	ENSPCOG00000015159	SLIRP	99	70.732	Propithecus_coquereli
ENSSBOG00000020014	SLIRP	77	64.865	ENSPNAG00000008633	slirp	81	61.250	Pygocentrus_nattereri
ENSSBOG00000020014	SLIRP	87	80.233	ENSRBIG00000032998	-	90	79.381	Rhinopithecus_bieti
ENSSBOG00000020014	SLIRP	87	87.654	ENSRBIG00000032222	-	99	85.870	Rhinopithecus_bieti
ENSSBOG00000020014	SLIRP	84	79.487	ENSRBIG00000035817	-	83	78.652	Rhinopithecus_bieti
ENSSBOG00000020014	SLIRP	88	79.268	ENSRBIG00000031396	-	93	78.495	Rhinopithecus_bieti
ENSSBOG00000020014	SLIRP	88	78.049	ENSRROG00000035604	-	93	77.419	Rhinopithecus_roxellana
ENSSBOG00000020014	SLIRP	87	83.333	ENSRROG00000017133	-	99	82.105	Rhinopithecus_roxellana
ENSSBOG00000020014	SLIRP	87	86.420	ENSRROG00000036656	-	99	84.783	Rhinopithecus_roxellana
ENSSBOG00000020014	SLIRP	84	85.897	ENSRROG00000041312	-	94	80.208	Rhinopithecus_roxellana
ENSSBOG00000020014	SLIRP	72	65.672	ENSSFOG00015011165	slirp	76	60.000	Scleropages_formosus
ENSSBOG00000020014	SLIRP	71	46.970	ENSSMAG00000012930	slirp	83	41.379	Scophthalmus_maximus
ENSSBOG00000020014	SLIRP	73	63.235	ENSSDUG00000021883	slirp	55	55.952	Seriola_dumerili
ENSSBOG00000020014	SLIRP	72	64.179	ENSSLDG00000023136	slirp	75	55.952	Seriola_lalandi_dorsalis
ENSSBOG00000020014	SLIRP	84	56.962	ENSSPUG00000009346	SLIRP	81	56.962	Sphenodon_punctatus
ENSSBOG00000020014	SLIRP	72	56.716	ENSSPAG00000013477	slirp	73	52.055	Stegastes_partitus
ENSSBOG00000020014	SLIRP	95	75.000	ENSSSCG00000028167	SLIRP	79	75.000	Sus_scrofa
ENSSBOG00000020014	SLIRP	72	55.224	ENSTGUG00000012337	SLIRP	82	50.000	Taeniopygia_guttata
ENSSBOG00000020014	SLIRP	72	55.882	ENSTRUG00000020127	slirp	74	52.000	Takifugu_rubripes
ENSSBOG00000020014	SLIRP	95	76.136	ENSUAMG00000022445	SLIRP	79	76.136	Ursus_americanus
ENSSBOG00000020014	SLIRP	95	76.136	ENSUMAG00000007166	SLIRP	79	76.136	Ursus_maritimus
ENSSBOG00000020014	SLIRP	95	72.727	ENSVPAG00000001781	SLIRP	81	72.727	Vicugna_pacos
ENSSBOG00000020014	SLIRP	82	80.263	ENSVVUG00000004436	SLIRP	79	77.273	Vulpes_vulpes
ENSSBOG00000020014	SLIRP	72	61.194	ENSXETG00000030343	SLIRP	81	56.944	Xenopus_tropicalis
ENSSBOG00000020014	SLIRP	74	60.870	ENSXCOG00000009422	slirp	70	60.000	Xiphophorus_couchianus
ENSSBOG00000020014	SLIRP	74	62.319	ENSXMAG00000015655	slirp	70	61.429	Xiphophorus_maculatus