EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSBOG00000020342 (Gene tree)
Gene ID: 101042342
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saimiri_boliviensis_boliviensis
Status: putative
Strand: Plus strand
Length: 6057 bases
Position: chrJH378257.1:367076-373132
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSBOP00000006723	MMR_HSR1	PF01926.23	0.00018	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSBOT00000023473	-	1607	XM_003941870	ENSSBOP00000006723	202 (aa)	XP_003941919	A0A2K6SH62
ENSSBOT00000023483	-	363	-	ENSSBOP00000006734	120 (aa)	-	A0A2K6SH96

Gene Model

Click here to download ENSSBOG00000020342's gene model file

Pathways

Pathway ID	Pathway Name	Source
sbq04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSBOG00000020342's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSBOG00000020342	-	86	46.629	ENSSBOG00000025110	RAB39B	84	46.629
ENSSBOG00000020342	-	59	45.000	ENSSBOG00000028389	RAB6A	68	45.000
ENSSBOG00000020342	-	84	40.230	ENSSBOG00000034839	RAB2B	98	40.230
ENSSBOG00000020342	-	84	47.929	ENSSBOG00000025313	RAB2A	80	47.929
ENSSBOG00000020342	-	81	38.323	ENSSBOG00000014322	RAB7A	81	38.323
ENSSBOG00000020342	-	83	52.976	ENSSBOG00000021125	RAB12	64	52.976
ENSSBOG00000020342	-	91	42.424	ENSSBOG00000035094	RAB11B	93	47.674
ENSSBOG00000020342	-	81	38.824	ENSSBOG00000018817	RAB9A	83	38.824
ENSSBOG00000020342	-	81	37.576	ENSSBOG00000033237	RAB23	69	37.576
ENSSBOG00000020342	-	82	44.242	ENSSBOG00000027362	RAB14	77	44.242
ENSSBOG00000020342	-	84	34.104	ENSSBOG00000034195	RERG	84	34.104
ENSSBOG00000020342	-	80	37.423	ENSSBOG00000023115	MRAS	78	37.423
ENSSBOG00000020342	-	91	36.757	ENSSBOG00000022477	KRAS	98	37.629
ENSSBOG00000020342	-	78	42.405	ENSSBOG00000032178	RAB6B	76	42.405
ENSSBOG00000020342	-	67	30.147	ENSSBOG00000021669	ARF5	72	30.147
ENSSBOG00000020342	-	98	51.269	ENSSBOG00000023732	RAB1A	96	51.269
ENSSBOG00000020342	-	84	41.379	ENSSBOG00000028836	RAB33B	76	41.379
ENSSBOG00000020342	-	91	54.348	ENSSBOG00000033554	RAB1B	92	54.348
ENSSBOG00000020342	-	80	39.506	ENSSBOG00000023272	HRAS	85	39.506
ENSSBOG00000020342	-	80	42.236	ENSSBOG00000032552	-	75	42.236
ENSSBOG00000020342	-	84	53.529	ENSSBOG00000008843	RAB15	80	53.529
ENSSBOG00000020342	-	82	47.273	ENSSBOG00000017326	RAB11A	76	47.273
ENSSBOG00000020342	-	78	31.013	ENSSBOG00000033266	-	67	31.013
ENSSBOG00000020342	-	80	38.272	ENSSBOG00000021039	NRAS	90	38.272
ENSSBOG00000020342	-	93	38.308	ENSSBOG00000032212	RAB25	94	38.308
ENSSBOG00000020342	-	95	37.255	ENSSBOG00000029883	RAB34	79	37.255
ENSSBOG00000020342	-	79	38.889	ENSSBOG00000035419	RAB5B	84	38.889
ENSSBOG00000020342	-	80	49.383	ENSSBOG00000026403	RAB30	80	49.383
ENSSBOG00000020342	-	65	30.345	ENSSBOG00000021962	ARFRP1	70	30.345
ENSSBOG00000020342	-	87	42.781	ENSSBOG00000025176	RAB33A	79	42.781

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSBOG00000020342	-	100	99.015	ENSG00000143545	RAB13	100	99.015	Homo_sapiens
ENSSBOG00000020342	-	95	78.125	ENSACIG00000008584	rab13	92	78.125	Amphilophus_citrinellus
ENSSBOG00000020342	-	100	98.030	ENSANAG00000030247	-	100	98.030	Aotus_nancymaae
ENSSBOG00000020342	-	99	79.602	ENSAMXG00000030712	rab13	99	79.602	Astyanax_mexicanus
ENSSBOG00000020342	-	100	97.044	ENSBTAG00000017604	RAB13	100	97.044	Bos_taurus
ENSSBOG00000020342	-	80	47.239	WBGene00019317	K02E10.1	75	47.239	Caenorhabditis_elegans
ENSSBOG00000020342	-	100	98.522	ENSCJAG00000009933	-	100	98.522	Callithrix_jacchus
ENSSBOG00000020342	-	100	96.552	ENSCHIG00000022271	-	100	96.552	Capra_hircus
ENSSBOG00000020342	-	99	90.594	ENSCPOG00000011491	-	99	90.594	Cavia_porcellus
ENSSBOG00000020342	-	100	99.507	ENSCCAG00000028502	-	100	99.507	Cebus_capucinus
ENSSBOG00000020342	-	100	99.015	ENSCATG00000041779	-	100	99.015	Cercocebus_atys
ENSSBOG00000020342	-	100	90.640	ENSCLAG00000006603	-	100	90.640	Chinchilla_lanigera
ENSSBOG00000020342	-	100	99.015	ENSCANG00000036573	-	100	99.015	Colobus_angolensis_palliatus
ENSSBOG00000020342	-	100	94.581	ENSCGRG00001021505	Rab13	100	94.581	Cricetulus_griseus_chok1gshd
ENSSBOG00000020342	-	100	94.581	ENSCGRG00000012126	Rab13	100	94.581	Cricetulus_griseus_crigri
ENSSBOG00000020342	-	99	76.471	ENSCSEG00000002358	rab13	99	76.471	Cynoglossus_semilaevis
ENSSBOG00000020342	-	99	78.607	ENSDARG00000034771	rab13	99	78.607	Danio_rerio
ENSSBOG00000020342	-	100	95.074	ENSDORG00000001591	Rab13	100	95.074	Dipodomys_ordii
ENSSBOG00000020342	-	100	97.537	ENSEASG00005000683	-	100	97.537	Equus_asinus_asinus
ENSSBOG00000020342	-	100	97.537	ENSECAG00000016551	RAB13	100	97.537	Equus_caballus
ENSSBOG00000020342	-	99	89.604	ENSEEUG00000001233	-	99	89.604	Erinaceus_europaeus
ENSSBOG00000020342	-	99	77.612	ENSELUG00000012801	rab13	99	77.612	Esox_lucius
ENSSBOG00000020342	-	100	91.626	ENSFCAG00000045269	-	100	91.626	Felis_catus
ENSSBOG00000020342	-	65	96.970	ENSFDAG00000014469	-	100	96.970	Fukomys_damarensis
ENSSBOG00000020342	-	99	76.119	ENSFHEG00000021221	rab13	95	85.549	Fundulus_heteroclitus
ENSSBOG00000020342	-	99	76.119	ENSGACG00000011925	rab13	99	76.119	Gasterosteus_aculeatus
ENSSBOG00000020342	-	86	90.751	ENSGAGG00000000742	-	99	81.281	Gopherus_agassizii
ENSSBOG00000020342	-	100	99.015	ENSGGOG00000023693	RAB13	100	99.015	Gorilla_gorilla
ENSSBOG00000020342	-	100	90.099	ENSHGLG00000008749	RAB13	100	90.099	Heterocephalus_glaber_female
ENSSBOG00000020342	-	100	90.099	ENSHGLG00100013608	RAB13	100	90.099	Heterocephalus_glaber_male
ENSSBOG00000020342	-	99	74.129	ENSHCOG00000007440	rab13	95	86.127	Hippocampus_comes
ENSSBOG00000020342	-	99	77.387	ENSIPUG00000003199	rab13	99	77.387	Ictalurus_punctatus
ENSSBOG00000020342	-	100	96.552	ENSSTOG00000011222	-	100	96.552	Ictidomys_tridecemlineatus
ENSSBOG00000020342	-	100	91.626	ENSJJAG00000010575	Rab13	100	91.626	Jaculus_jaculus
ENSSBOG00000020342	-	99	76.382	ENSKMAG00000001908	rab13	99	76.382	Kryptolebias_marmoratus
ENSSBOG00000020342	-	99	77.387	ENSLBEG00000026779	rab13	99	77.387	Labrus_bergylta
ENSSBOG00000020342	-	85	77.907	ENSLACG00000008103	-	97	77.907	Latimeria_chalumnae
ENSSBOG00000020342	-	100	99.015	ENSMFAG00000041018	RAB13	100	99.015	Macaca_fascicularis
ENSSBOG00000020342	-	100	99.015	ENSMNEG00000028951	-	100	99.015	Macaca_nemestrina
ENSSBOG00000020342	-	100	99.015	ENSMLEG00000042247	-	100	99.015	Mandrillus_leucophaeus
ENSSBOG00000020342	-	99	76.119	ENSMAMG00000014602	rab13	99	76.119	Mastacembelus_armatus
ENSSBOG00000020342	-	100	94.581	ENSMAUG00000015713	Rab13	100	94.581	Mesocricetus_auratus
ENSSBOG00000020342	-	100	97.030	ENSMICG00000010340	-	100	97.030	Microcebus_murinus
ENSSBOG00000020342	-	100	94.581	ENSMOCG00000021448	Rab13	100	94.581	Microtus_ochrogaster
ENSSBOG00000020342	-	99	92.574	ENSMODG00000017295	-	84	92.574	Monodelphis_domestica
ENSSBOG00000020342	-	100	92.118	MGP_CAROLIEiJ_G0025227	Rab13	100	92.118	Mus_caroli
ENSSBOG00000020342	-	100	91.584	ENSMUSG00000027935	Rab13	100	91.584	Mus_musculus
ENSSBOG00000020342	-	99	92.040	MGP_PahariEiJ_G0026671	Rab13	99	92.040	Mus_pahari
ENSSBOG00000020342	-	100	94.554	ENSNGAG00000010309	Rab13	100	94.554	Nannospalax_galili
ENSSBOG00000020342	-	99	76.119	ENSNBRG00000004124	rab13	99	76.119	Neolamprologus_brichardi
ENSSBOG00000020342	-	100	99.015	ENSNLEG00000028944	-	100	99.015	Nomascus_leucogenys
ENSSBOG00000020342	-	100	92.647	ENSMEUG00000009667	-	100	92.647	Notamacropus_eugenii
ENSSBOG00000020342	-	63	97.638	ENSODEG00000012634	-	100	97.638	Octodon_degus
ENSSBOG00000020342	-	100	89.163	ENSODEG00000010443	-	100	89.163	Octodon_degus
ENSSBOG00000020342	-	99	76.119	ENSONIG00000006340	rab13	99	76.119	Oreochromis_niloticus
ENSSBOG00000020342	-	88	96.067	ENSOCUG00000006286	-	100	96.067	Oryctolagus_cuniculus
ENSSBOG00000020342	-	99	77.114	ENSOMEG00000008210	rab13	99	77.114	Oryzias_melastigma
ENSSBOG00000020342	-	99	94.030	ENSOGAG00000016969	-	99	94.030	Otolemur_garnettii
ENSSBOG00000020342	-	100	99.015	ENSPPAG00000028435	-	100	99.015	Pan_paniscus
ENSSBOG00000020342	-	100	91.626	ENSPPRG00000008865	-	100	91.626	Panthera_pardus
ENSSBOG00000020342	-	100	99.015	ENSPTRG00000001370	RAB13	100	99.015	Pan_troglodytes
ENSSBOG00000020342	-	100	99.015	ENSPANG00000004479	-	100	99.015	Papio_anubis
ENSSBOG00000020342	-	99	76.617	ENSPMGG00000007680	rab13	99	76.617	Periophthalmus_magnuspinnatus
ENSSBOG00000020342	-	53	97.222	ENSPEMG00000017353	-	81	97.222	Peromyscus_maniculatus_bairdii
ENSSBOG00000020342	-	100	92.647	ENSPCIG00000029350	-	100	92.647	Phascolarctos_cinereus
ENSSBOG00000020342	-	86	83.815	ENSPLAG00000005832	RAB13	93	83.815	Poecilia_latipinna
ENSSBOG00000020342	-	91	80.328	ENSPREG00000017567	rab13	99	74.627	Poecilia_reticulata
ENSSBOG00000020342	-	100	99.015	ENSPPYG00000000790	-	100	99.015	Pongo_abelii
ENSSBOG00000020342	-	100	98.020	ENSPCOG00000012189	-	100	98.020	Propithecus_coquereli
ENSSBOG00000020342	-	100	95.050	ENSPVAG00000011095	-	100	95.050	Pteropus_vampyrus
ENSSBOG00000020342	-	86	86.127	ENSPNAG00000004189	rab13	92	86.127	Pygocentrus_nattereri
ENSSBOG00000020342	-	100	92.118	ENSRNOG00000016733	Rab13	100	92.118	Rattus_norvegicus
ENSSBOG00000020342	-	100	98.522	ENSRBIG00000008552	-	100	98.522	Rhinopithecus_bieti
ENSSBOG00000020342	-	100	98.522	ENSRROG00000036885	-	100	98.522	Rhinopithecus_roxellana
ENSSBOG00000020342	-	100	92.157	ENSSHAG00000011866	-	100	92.157	Sarcophilus_harrisii
ENSSBOG00000020342	-	100	97.537	ENSSSCG00000006564	-	100	97.537	Sus_scrofa
ENSSBOG00000020342	-	99	77.612	ENSTRUG00000024177	rab13	99	77.612	Takifugu_rubripes
ENSSBOG00000020342	-	100	96.552	ENSTBEG00000012734	-	100	96.552	Tupaia_belangeri
ENSSBOG00000020342	-	100	98.522	ENSTTRG00000011183	-	100	98.522	Tursiops_truncatus
ENSSBOG00000020342	-	71	81.944	ENSXETG00000020729	rab13	99	78.261	Xenopus_tropicalis
ENSSBOG00000020342	-	86	82.659	ENSXCOG00000019533	rab13	93	82.659	Xiphophorus_couchianus