EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSBOG00000020389 (Gene tree)
Gene ID: 101045103
Gene Symbol: R3HDM1
Alias: KIAA0029|R3HDM
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Saimiri_boliviensis_boliviensis
Status: putative
Strand: Minus strand
Length: 139052 bases
Position: chrJH378109.1:48909962-49049013
Accession: 9757
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSBOP00000006944	R3H	PF01424.22	2.4e-11	1	1
ENSSBOP00000006936	R3H	PF01424.22	2.7e-11	1	1
ENSSBOP00000006932	R3H	PF01424.22	2.8e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSBOT00000023696	R3HDM1-203	3893	XM_010330619	ENSSBOP00000006944	971 (aa)	XP_010328921	A0A2K6SHV6
ENSSBOT00000023684	R3HDM1-201	4786	XM_003922010	ENSSBOP00000006932	1100 (aa)	XP_003922059	A0A2K6SHQ9
ENSSBOT00000023688	R3HDM1-202	4112	XM_010330654	ENSSBOP00000006936	1044 (aa)	XP_010328956	A0A2K6SHT2

Gene Model

Click here to download ENSSBOG00000020389's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSBOG00000020389's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSBOG00000020389	R3HDM1	62	62.696	ENSSBOG00000029427	ARPP21	95	49.200
ENSSBOG00000020389	R3HDM1	99	49.752	ENSSBOG00000023547	R3HDM2	97	50.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSBOG00000020389	R3HDM1	100	97.727	ENSG00000048991	R3HDM1	100	97.727	Homo_sapiens
ENSSBOG00000020389	R3HDM1	88	63.200	ENSAPOG00000020850	r3hdm1	92	58.088	Acanthochromis_polyacanthus
ENSSBOG00000020389	R3HDM1	100	95.195	ENSAMEG00000014886	R3HDM1	100	95.195	Ailuropoda_melanoleuca
ENSSBOG00000020389	R3HDM1	87	57.843	ENSAOCG00000005192	r3hdm1	95	57.843	Amphiprion_ocellaris
ENSSBOG00000020389	R3HDM1	87	62.933	ENSAPEG00000016108	r3hdm1	95	62.933	Amphiprion_percula
ENSSBOG00000020389	R3HDM1	87	62.903	ENSATEG00000000232	r3hdm1	82	62.903	Anabas_testudineus
ENSSBOG00000020389	R3HDM1	100	78.681	ENSAPLG00000015231	R3HDM1	100	78.862	Anas_platyrhynchos
ENSSBOG00000020389	R3HDM1	100	75.941	ENSACAG00000001676	R3HDM1	100	76.728	Anolis_carolinensis
ENSSBOG00000020389	R3HDM1	100	98.638	ENSANAG00000035334	R3HDM1	100	98.638	Aotus_nancymaae
ENSSBOG00000020389	R3HDM1	87	62.133	ENSACLG00000027282	r3hdm1	94	62.133	Astatotilapia_calliptera
ENSSBOG00000020389	R3HDM1	89	78.571	ENSAMXG00000012861	R3HDM1	100	60.404	Astyanax_mexicanus
ENSSBOG00000020389	R3HDM1	60	40.346	ENSAMXG00000020587	arpp21	85	39.967	Astyanax_mexicanus
ENSSBOG00000020389	R3HDM1	88	74.684	ENSAMXG00000003536	r3hdm1	89	74.603	Astyanax_mexicanus
ENSSBOG00000020389	R3HDM1	100	92.345	ENSBTAG00000013302	R3HDM1	100	90.941	Bos_taurus
ENSSBOG00000020389	R3HDM1	100	98.372	ENSCJAG00000011718	R3HDM1	100	98.372	Callithrix_jacchus
ENSSBOG00000020389	R3HDM1	100	95.376	ENSCAFG00000005075	R3HDM1	100	95.376	Canis_familiaris
ENSSBOG00000020389	R3HDM1	100	95.376	ENSCAFG00020016119	R3HDM1	100	95.467	Canis_lupus_dingo
ENSSBOG00000020389	R3HDM1	100	93.472	ENSCHIG00000020851	R3HDM1	100	93.563	Capra_hircus
ENSSBOG00000020389	R3HDM1	100	88.664	ENSCPOG00000012784	R3HDM1	100	88.752	Cavia_porcellus
ENSSBOG00000020389	R3HDM1	100	98.659	ENSCCAG00000027199	R3HDM1	100	98.659	Cebus_capucinus
ENSSBOG00000020389	R3HDM1	100	97.970	ENSCATG00000023642	R3HDM1	100	97.545	Cercocebus_atys
ENSSBOG00000020389	R3HDM1	100	88.830	ENSCLAG00000007962	R3HDM1	94	96.078	Chinchilla_lanigera
ENSSBOG00000020389	R3HDM1	100	94.621	ENSCSAG00000016356	R3HDM1	100	94.621	Chlorocebus_sabaeus
ENSSBOG00000020389	R3HDM1	80	93.939	ENSCHOG00000013638	R3HDM1	81	94.118	Choloepus_hoffmanni
ENSSBOG00000020389	R3HDM1	91	91.144	ENSCPBG00000009645	R3HDM1	100	91.144	Chrysemys_picta_bellii
ENSSBOG00000020389	R3HDM1	100	97.548	ENSCANG00000034748	R3HDM1	100	97.548	Colobus_angolensis_palliatus
ENSSBOG00000020389	R3HDM1	99	88.438	ENSCGRG00001012357	R3hdm1	97	88.438	Cricetulus_griseus_chok1gshd
ENSSBOG00000020389	R3HDM1	99	91.000	ENSCGRG00000012080	R3hdm1	100	92.798	Cricetulus_griseus_crigri
ENSSBOG00000020389	R3HDM1	81	65.246	ENSCSEG00000008944	r3hdm1	88	57.701	Cynoglossus_semilaevis
ENSSBOG00000020389	R3HDM1	87	61.333	ENSCVAG00000007582	r3hdm1	91	61.333	Cyprinodon_variegatus
ENSSBOG00000020389	R3HDM1	64	35.743	ENSDARG00000061081	arpp21	62	43.005	Danio_rerio
ENSSBOG00000020389	R3HDM1	100	91.205	ENSDNOG00000000771	R3HDM1	100	90.631	Dasypus_novemcinctus
ENSSBOG00000020389	R3HDM1	100	82.865	ENSETEG00000013606	R3HDM1	100	83.046	Echinops_telfairi
ENSSBOG00000020389	R3HDM1	66	41.425	ENSEBUG00000014746	arpp21	97	42.360	Eptatretus_burgeri
ENSSBOG00000020389	R3HDM1	100	96.685	ENSEASG00005007392	R3HDM1	100	94.832	Equus_asinus_asinus
ENSSBOG00000020389	R3HDM1	99	96.685	ENSECAG00000019114	R3HDM1	100	95.195	Equus_caballus
ENSSBOG00000020389	R3HDM1	91	86.506	ENSEEUG00000012589	R3HDM1	91	86.506	Erinaceus_europaeus
ENSSBOG00000020389	R3HDM1	92	52.581	ENSELUG00000014413	r3hdm1	100	52.252	Esox_lucius
ENSSBOG00000020389	R3HDM1	83	77.670	ENSELUG00000004909	R3HDM1	99	55.089	Esox_lucius
ENSSBOG00000020389	R3HDM1	100	96.409	ENSFCAG00000027113	R3HDM1	100	94.742	Felis_catus
ENSSBOG00000020389	R3HDM1	75	72.759	ENSFALG00000013731	R3HDM1	72	72.410	Ficedula_albicollis
ENSSBOG00000020389	R3HDM1	100	88.225	ENSFDAG00000016478	R3HDM1	94	96.078	Fukomys_damarensis
ENSSBOG00000020389	R3HDM1	87	57.353	ENSFHEG00000018713	r3hdm1	100	47.320	Fundulus_heteroclitus
ENSSBOG00000020389	R3HDM1	61	64.565	ENSGMOG00000006042	-	74	64.783	Gadus_morhua
ENSSBOG00000020389	R3HDM1	94	77.681	ENSGALG00000012246	R3HDM1	99	85.902	Gallus_gallus
ENSSBOG00000020389	R3HDM1	87	62.133	ENSGAFG00000006203	r3hdm1	95	62.133	Gambusia_affinis
ENSSBOG00000020389	R3HDM1	86	68.269	ENSGACG00000014925	r3hdm1	92	68.269	Gasterosteus_aculeatus
ENSSBOG00000020389	R3HDM1	99	82.817	ENSGAGG00000007840	R3HDM1	93	86.435	Gopherus_agassizii
ENSSBOG00000020389	R3HDM1	100	97.545	ENSGGOG00000008156	R3HDM1	100	97.545	Gorilla_gorilla
ENSSBOG00000020389	R3HDM1	100	89.085	ENSHGLG00000015718	R3HDM1	94	96.078	Heterocephalus_glaber_female
ENSSBOG00000020389	R3HDM1	100	88.908	ENSHGLG00100003184	-	94	96.078	Heterocephalus_glaber_male
ENSSBOG00000020389	R3HDM1	100	68.540	ENSHGLG00100015374	-	100	68.631	Heterocephalus_glaber_male
ENSSBOG00000020389	R3HDM1	84	58.760	ENSHCOG00000013366	r3hdm1	88	60.000	Hippocampus_comes
ENSSBOG00000020389	R3HDM1	82	73.668	ENSIPUG00000001676	R3HDM1	91	73.913	Ictalurus_punctatus
ENSSBOG00000020389	R3HDM1	53	37.876	ENSIPUG00000020552	arpp21	74	38.011	Ictalurus_punctatus
ENSSBOG00000020389	R3HDM1	85	67.267	ENSIPUG00000013629	r3hdm1	94	70.288	Ictalurus_punctatus
ENSSBOG00000020389	R3HDM1	100	95.005	ENSSTOG00000007572	R3HDM1	100	96.091	Ictidomys_tridecemlineatus
ENSSBOG00000020389	R3HDM1	94	85.806	ENSLACG00000005334	R3HDM1	100	71.026	Latimeria_chalumnae
ENSSBOG00000020389	R3HDM1	100	65.611	ENSLOCG00000001641	r3hdm1	100	66.281	Lepisosteus_oculatus
ENSSBOG00000020389	R3HDM1	100	91.021	ENSLAFG00000009065	R3HDM1	100	91.021	Loxodonta_africana
ENSSBOG00000020389	R3HDM1	100	97.727	ENSMFAG00000030331	R3HDM1	100	98.522	Macaca_fascicularis
ENSSBOG00000020389	R3HDM1	100	97.545	ENSMMUG00000009844	R3HDM1	100	97.545	Macaca_mulatta
ENSSBOG00000020389	R3HDM1	100	97.545	ENSMNEG00000027793	R3HDM1	100	98.522	Macaca_nemestrina
ENSSBOG00000020389	R3HDM1	100	97.818	ENSMLEG00000043189	R3HDM1	100	97.818	Mandrillus_leucophaeus
ENSSBOG00000020389	R3HDM1	87	61.930	ENSMAMG00000004532	r3hdm1	91	57.143	Mastacembelus_armatus
ENSSBOG00000020389	R3HDM1	87	62.133	ENSMZEG00005003157	r3hdm1	95	57.108	Maylandia_zebra
ENSSBOG00000020389	R3HDM1	100	78.410	ENSMGAG00000012461	R3HDM1	100	78.500	Meleagris_gallopavo
ENSSBOG00000020389	R3HDM1	100	88.246	ENSMAUG00000010315	R3hdm1	100	92.387	Mesocricetus_auratus
ENSSBOG00000020389	R3HDM1	100	94.090	ENSMICG00000005900	-	100	94.090	Microcebus_murinus
ENSSBOG00000020389	R3HDM1	95	92.100	ENSMICG00000042655	-	100	92.100	Microcebus_murinus
ENSSBOG00000020389	R3HDM1	90	78.042	ENSMODG00000000923	R3HDM1	97	78.137	Monodelphis_domestica
ENSSBOG00000020389	R3HDM1	99	57.816	ENSMALG00000009000	r3hdm1	91	57.816	Monopterus_albus
ENSSBOG00000020389	R3HDM1	100	87.764	MGP_CAROLIEiJ_G0014543	R3hdm1	100	92.469	Mus_caroli
ENSSBOG00000020389	R3HDM1	100	87.676	ENSMUSG00000056211	R3hdm1	100	92.469	Mus_musculus
ENSSBOG00000020389	R3HDM1	100	87.500	MGP_PahariEiJ_G0027779	R3hdm1	100	92.469	Mus_pahari
ENSSBOG00000020389	R3HDM1	100	87.852	MGP_SPRETEiJ_G0015350	R3hdm1	100	92.469	Mus_spretus
ENSSBOG00000020389	R3HDM1	100	94.832	ENSMPUG00000002412	R3HDM1	100	94.832	Mustela_putorius_furo
ENSSBOG00000020389	R3HDM1	100	92.586	ENSMLUG00000013824	R3HDM1	100	92.586	Myotis_lucifugus
ENSSBOG00000020389	R3HDM1	100	97.636	ENSNLEG00000008622	R3HDM1	100	97.636	Nomascus_leucogenys
ENSSBOG00000020389	R3HDM1	89	72.940	ENSMEUG00000011784	R3HDM1	100	73.042	Notamacropus_eugenii
ENSSBOG00000020389	R3HDM1	100	88.028	ENSODEG00000008607	R3HDM1	94	96.514	Octodon_degus
ENSSBOG00000020389	R3HDM1	94	67.183	ENSONIG00000012017	r3hdm1	91	67.183	Oreochromis_niloticus
ENSSBOG00000020389	R3HDM1	100	81.605	ENSOANG00000007987	R3HDM1	100	81.876	Ornithorhynchus_anatinus
ENSSBOG00000020389	R3HDM1	89	93.293	ENSOCUG00000017366	R3HDM1	98	93.293	Oryctolagus_cuniculus
ENSSBOG00000020389	R3HDM1	87	60.800	ENSORLG00000004297	r3hdm1	90	60.800	Oryzias_latipes
ENSSBOG00000020389	R3HDM1	89	61.067	ENSORLG00015017355	r3hdm1	91	61.067	Oryzias_latipes_hsok
ENSSBOG00000020389	R3HDM1	100	93.200	ENSOGAG00000003136	R3HDM1	100	93.200	Otolemur_garnettii
ENSSBOG00000020389	R3HDM1	100	93.291	ENSOARG00000010788	R3HDM1	100	93.382	Ovis_aries
ENSSBOG00000020389	R3HDM1	100	97.550	ENSPPAG00000027858	R3HDM1	100	97.550	Pan_paniscus
ENSSBOG00000020389	R3HDM1	100	94.379	ENSPPRG00000002626	R3HDM1	100	94.470	Panthera_pardus
ENSSBOG00000020389	R3HDM1	100	94.379	ENSPTIG00000016581	R3HDM1	100	94.470	Panthera_tigris_altaica
ENSSBOG00000020389	R3HDM1	100	97.459	ENSPTRG00000012494	R3HDM1	100	97.459	Pan_troglodytes
ENSSBOG00000020389	R3HDM1	100	97.727	ENSPANG00000026448	R3HDM1	100	97.727	Papio_anubis
ENSSBOG00000020389	R3HDM1	94	76.358	ENSPKIG00000004328	r3hdm1	91	76.677	Paramormyrops_kingsleyae
ENSSBOG00000020389	R3HDM1	100	78.662	ENSPSIG00000012915	R3HDM1	100	78.933	Pelodiscus_sinensis
ENSSBOG00000020389	R3HDM1	100	88.820	ENSPEMG00000015187	R3hdm1	100	92.593	Peromyscus_maniculatus_bairdii
ENSSBOG00000020389	R3HDM1	91	53.102	ENSPMAG00000003369	-	98	42.955	Petromyzon_marinus
ENSSBOG00000020389	R3HDM1	100	89.835	ENSPCIG00000002491	R3HDM1	100	84.505	Phascolarctos_cinereus
ENSSBOG00000020389	R3HDM1	81	67.857	ENSPFOG00000015036	r3hdm1	85	67.857	Poecilia_formosa
ENSSBOG00000020389	R3HDM1	87	60.477	ENSPLAG00000018042	r3hdm1	91	60.477	Poecilia_latipinna
ENSSBOG00000020389	R3HDM1	87	60.477	ENSPMEG00000023947	r3hdm1	91	60.477	Poecilia_mexicana
ENSSBOG00000020389	R3HDM1	81	68.932	ENSPREG00000007902	r3hdm1	94	60.582	Poecilia_reticulata
ENSSBOG00000020389	R3HDM1	100	96.367	ENSPPYG00000012815	R3HDM1	100	96.367	Pongo_abelii
ENSSBOG00000020389	R3HDM1	100	81.777	ENSPCAG00000006208	R3HDM1	100	81.233	Procavia_capensis
ENSSBOG00000020389	R3HDM1	100	93.811	ENSPCOG00000012698	R3HDM1	100	93.811	Propithecus_coquereli
ENSSBOG00000020389	R3HDM1	100	85.507	ENSPVAG00000006098	R3HDM1	100	85.507	Pteropus_vampyrus
ENSSBOG00000020389	R3HDM1	88	76.603	ENSPNAG00000005436	R3HDM1	99	76.527	Pygocentrus_nattereri
ENSSBOG00000020389	R3HDM1	69	38.571	ENSPNAG00000004162	arpp21	58	50.646	Pygocentrus_nattereri
ENSSBOG00000020389	R3HDM1	94	74.522	ENSPNAG00000013952	r3hdm1	95	70.811	Pygocentrus_nattereri
ENSSBOG00000020389	R3HDM1	100	85.464	ENSRNOG00000004099	R3hdm1	100	86.444	Rattus_norvegicus
ENSSBOG00000020389	R3HDM1	100	96.574	ENSRBIG00000033317	R3HDM1	100	99.262	Rhinopithecus_bieti
ENSSBOG00000020389	R3HDM1	100	98.066	ENSRROG00000034534	R3HDM1	100	97.366	Rhinopithecus_roxellana
ENSSBOG00000020389	R3HDM1	100	84.796	ENSSHAG00000016999	R3HDM1	100	84.887	Sarcophilus_harrisii
ENSSBOG00000020389	R3HDM1	100	56.394	ENSSFOG00015019851	-	100	56.039	Scleropages_formosus
ENSSBOG00000020389	R3HDM1	89	78.193	ENSSFOG00015014134	r3hdm1	100	70.874	Scleropages_formosus
ENSSBOG00000020389	R3HDM1	99	61.351	ENSSMAG00000001669	r3hdm1	99	45.205	Scophthalmus_maximus
ENSSBOG00000020389	R3HDM1	87	63.298	ENSSDUG00000010749	r3hdm1	91	63.298	Seriola_dumerili
ENSSBOG00000020389	R3HDM1	92	69.551	ENSSLDG00000004499	r3hdm1	91	57.946	Seriola_lalandi_dorsalis
ENSSBOG00000020389	R3HDM1	74	79.348	ENSSARG00000000352	-	69	81.395	Sorex_araneus
ENSSBOG00000020389	R3HDM1	100	80.307	ENSSPUG00000004167	R3HDM1	100	80.307	Sphenodon_punctatus
ENSSBOG00000020389	R3HDM1	87	63.200	ENSSPAG00000004648	r3hdm1	91	63.200	Stegastes_partitus
ENSSBOG00000020389	R3HDM1	100	95.856	ENSSSCG00000015692	R3HDM1	100	94.470	Sus_scrofa
ENSSBOG00000020389	R3HDM1	100	75.369	ENSTGUG00000011750	R3HDM1	100	73.351	Taeniopygia_guttata
ENSSBOG00000020389	R3HDM1	81	67.857	ENSTRUG00000011654	r3hdm1	84	67.857	Takifugu_rubripes
ENSSBOG00000020389	R3HDM1	82	67.732	ENSTNIG00000010362	r3hdm1	95	45.881	Tetraodon_nigroviridis
ENSSBOG00000020389	R3HDM1	100	87.024	ENSTTRG00000003935	R3HDM1	100	87.398	Tursiops_truncatus
ENSSBOG00000020389	R3HDM1	70	95.490	ENSUAMG00000024806	R3HDM1	94	94.563	Ursus_americanus
ENSSBOG00000020389	R3HDM1	100	96.685	ENSUMAG00000005552	R3HDM1	100	93.634	Ursus_maritimus
ENSSBOG00000020389	R3HDM1	97	94.118	ENSVPAG00000007333	R3HDM1	93	89.577	Vicugna_pacos
ENSSBOG00000020389	R3HDM1	100	96.409	ENSVVUG00000006457	R3HDM1	100	91.718	Vulpes_vulpes
ENSSBOG00000020389	R3HDM1	90	67.472	ENSXETG00000019330	r3hdm1	100	67.271	Xenopus_tropicalis
ENSSBOG00000020389	R3HDM1	71	50.448	ENSXCOG00000017448	r3hdm1	94	50.712	Xiphophorus_couchianus
ENSSBOG00000020389	R3HDM1	81	68.608	ENSXMAG00000007885	r3hdm1	88	61.600	Xiphophorus_maculatus