EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSBOG00000020641 (Gene tree)
Gene ID: 101037818
Gene Symbol: SMARCA1
Alias: ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SWI|hSNF2L
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Saimiri_boliviensis_boliviensis
Status: putative
Strand: Minus strand
Length: 73320 bases
Position: chrJH378148.1:11878856-11952175
Accession: 11097
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSBOP00000007936	ResIII	PF04851.15	6.5e-12	1	1
ENSSBOP00000007968	ResIII	PF04851.15	6.8e-12	1	1
ENSSBOP00000007936	DEAD	PF00270.29	1.2e-06	1	1
ENSSBOP00000007968	DEAD	PF00270.29	1.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSBOT00000024694	SMARCA1-201	3712	XM_003931109	ENSSBOP00000007936	980 (aa)	XP_003931158	A0A2K6SKP0
ENSSBOT00000024726	SMARCA1-202	3111	-	ENSSBOP00000007968	1036 (aa)	-	A0A2K6SKQ3

Gene Model

Click here to download ENSSBOG00000020641's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSBOG00000020641's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSBOG00000020641	SMARCA1	53	42.287	ENSSBOG00000022089	CHD6	75	40.048
ENSSBOG00000020641	SMARCA1	99	85.685	ENSSBOG00000036257	SMARCA5	93	85.685

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSBOG00000020641	SMARCA1	100	99.796	ENSG00000102038	SMARCA1	96	98.258	Homo_sapiens
ENSSBOG00000020641	SMARCA1	99	83.607	ENSAPOG00000016035	smarca5	98	84.026	Acanthochromis_polyacanthus
ENSSBOG00000020641	SMARCA1	100	97.480	ENSAMEG00000015218	SMARCA1	96	96.228	Ailuropoda_melanoleuca
ENSSBOG00000020641	SMARCA1	92	84.053	ENSACIG00000016982	smarca5	99	84.152	Amphilophus_citrinellus
ENSSBOG00000020641	SMARCA1	99	83.607	ENSAOCG00000015578	smarca5	94	83.607	Amphiprion_ocellaris
ENSSBOG00000020641	SMARCA1	99	83.607	ENSAPEG00000011117	smarca5	99	84.080	Amphiprion_percula
ENSSBOG00000020641	SMARCA1	99	83.436	ENSATEG00000012894	smarca5	93	84.688	Anabas_testudineus
ENSSBOG00000020641	SMARCA1	100	93.163	ENSAPLG00000013149	SMARCA1	99	93.163	Anas_platyrhynchos
ENSSBOG00000020641	SMARCA1	100	92.041	ENSACAG00000011376	SMARCA1	95	90.316	Anolis_carolinensis
ENSSBOG00000020641	SMARCA1	100	94.286	ENSANAG00000023098	SMARCA1	96	93.127	Aotus_nancymaae
ENSSBOG00000020641	SMARCA1	99	83.845	ENSACLG00000025356	smarca5	94	83.845	Astatotilapia_calliptera
ENSSBOG00000020641	SMARCA1	95	88.495	ENSAMXG00000011227	smarca1	99	90.182	Astyanax_mexicanus
ENSSBOG00000020641	SMARCA1	99	84.156	ENSAMXG00000005709	smarca5	94	83.897	Astyanax_mexicanus
ENSSBOG00000020641	SMARCA1	99	98.466	ENSBTAG00000002292	SMARCA1	95	96.835	Bos_taurus
ENSSBOG00000020641	SMARCA1	100	63.535	WBGene00002169	isw-1	97	63.535	Caenorhabditis_elegans
ENSSBOG00000020641	SMARCA1	100	99.796	ENSCJAG00000002868	SMARCA1	96	98.258	Callithrix_jacchus
ENSSBOG00000020641	SMARCA1	100	88.265	ENSCAFG00000018673	SMARCA1	99	88.824	Canis_familiaris
ENSSBOG00000020641	SMARCA1	100	99.082	ENSCAFG00020001751	SMARCA1	96	96.615	Canis_lupus_dingo
ENSSBOG00000020641	SMARCA1	100	98.673	ENSCHIG00000009837	SMARCA1	96	96.035	Capra_hircus
ENSSBOG00000020641	SMARCA1	100	98.980	ENSTSYG00000004240	SMARCA1	98	97.080	Carlito_syrichta
ENSSBOG00000020641	SMARCA1	100	97.465	ENSCPOG00000013601	SMARCA1	96	96.517	Cavia_porcellus
ENSSBOG00000020641	SMARCA1	100	96.531	ENSCCAG00000030817	SMARCA1	96	95.257	Cebus_capucinus
ENSSBOG00000020641	SMARCA1	100	98.589	ENSCATG00000015921	SMARCA1	96	98.258	Cercocebus_atys
ENSSBOG00000020641	SMARCA1	100	97.959	ENSCLAG00000002171	SMARCA1	96	95.428	Chinchilla_lanigera
ENSSBOG00000020641	SMARCA1	100	99.796	ENSCSAG00000008460	SMARCA1	96	97.096	Chlorocebus_sabaeus
ENSSBOG00000020641	SMARCA1	100	93.367	ENSCPBG00000001146	SMARCA1	96	90.416	Chrysemys_picta_bellii
ENSSBOG00000020641	SMARCA1	99	73.695	ENSCING00000004110	swi/snf	97	73.695	Ciona_intestinalis
ENSSBOG00000020641	SMARCA1	99	73.081	ENSCSAVG00000004620	-	100	74.165	Ciona_savignyi
ENSSBOG00000020641	SMARCA1	100	99.694	ENSCANG00000007183	SMARCA1	96	98.161	Colobus_angolensis_palliatus
ENSSBOG00000020641	SMARCA1	100	97.245	ENSCGRG00001010776	Smarca1	93	97.245	Cricetulus_griseus_chok1gshd
ENSSBOG00000020641	SMARCA1	98	96.466	ENSCGRG00000015301	Smarca1	98	96.158	Cricetulus_griseus_crigri
ENSSBOG00000020641	SMARCA1	99	83.607	ENSCSEG00000000328	smarca5	94	83.538	Cynoglossus_semilaevis
ENSSBOG00000020641	SMARCA1	99	83.231	ENSCVAG00000008668	smarca5	99	83.628	Cyprinodon_variegatus
ENSSBOG00000020641	SMARCA1	99	86.145	ENSDARG00000012776	smarca1	96	86.145	Danio_rerio
ENSSBOG00000020641	SMARCA1	99	83.487	ENSDARG00000052348	smarca5	94	83.487	Danio_rerio
ENSSBOG00000020641	SMARCA1	98	97.388	ENSDNOG00000004315	SMARCA1	94	95.753	Dasypus_novemcinctus
ENSSBOG00000020641	SMARCA1	98	97.597	ENSDORG00000009270	Smarca1	92	97.597	Dipodomys_ordii
ENSSBOG00000020641	SMARCA1	99	72.691	FBgn0011604	Iswi	97	72.483	Drosophila_melanogaster
ENSSBOG00000020641	SMARCA1	83	93.750	ENSETEG00000017426	SMARCA1	85	93.750	Echinops_telfairi
ENSSBOG00000020641	SMARCA1	99	80.797	ENSEBUG00000001239	smarca5	96	80.797	Eptatretus_burgeri
ENSSBOG00000020641	SMARCA1	100	93.191	ENSEASG00005008218	SMARCA1	99	93.212	Equus_asinus_asinus
ENSSBOG00000020641	SMARCA1	100	98.878	ENSECAG00000012106	SMARCA1	96	96.228	Equus_caballus
ENSSBOG00000020641	SMARCA1	81	97.351	ENSEEUG00000014927	SMARCA1	83	97.351	Erinaceus_europaeus
ENSSBOG00000020641	SMARCA1	100	87.386	ENSELUG00000010515	smarca1	96	87.911	Esox_lucius
ENSSBOG00000020641	SMARCA1	100	98.980	ENSFCAG00000018496	SMARCA1	96	97.289	Felis_catus
ENSSBOG00000020641	SMARCA1	93	93.428	ENSFALG00000000209	SMARCA1	98	93.531	Ficedula_albicollis
ENSSBOG00000020641	SMARCA1	98	97.110	ENSFDAG00000009818	SMARCA1	97	97.677	Fukomys_damarensis
ENSSBOG00000020641	SMARCA1	99	83.538	ENSFHEG00000007687	smarca5	93	83.538	Fundulus_heteroclitus
ENSSBOG00000020641	SMARCA1	96	93.936	ENSGALG00000008431	SMARCA1	97	91.793	Gallus_gallus
ENSSBOG00000020641	SMARCA1	99	83.538	ENSGAFG00000017731	smarca5	94	83.538	Gambusia_affinis
ENSSBOG00000020641	SMARCA1	99	93.416	ENSGAGG00000023575	SMARCA1	100	93.416	Gopherus_agassizii
ENSSBOG00000020641	SMARCA1	73	96.000	ENSGGOG00000012841	-	96	96.000	Gorilla_gorilla
ENSSBOG00000020641	SMARCA1	100	97.347	ENSHGLG00000003080	SMARCA1	96	94.482	Heterocephalus_glaber_female
ENSSBOG00000020641	SMARCA1	100	96.755	ENSHGLG00100001102	SMARCA1	99	96.755	Heterocephalus_glaber_male
ENSSBOG00000020641	SMARCA1	99	83.436	ENSHCOG00000005458	smarca5	94	83.436	Hippocampus_comes
ENSSBOG00000020641	SMARCA1	99	86.988	ENSIPUG00000016905	Smarca1	99	86.988	Ictalurus_punctatus
ENSSBOG00000020641	SMARCA1	99	83.179	ENSIPUG00000005229	SMARCA5	96	83.179	Ictalurus_punctatus
ENSSBOG00000020641	SMARCA1	100	99.082	ENSSTOG00000014524	SMARCA1	94	99.073	Ictidomys_tridecemlineatus
ENSSBOG00000020641	SMARCA1	100	97.462	ENSJJAG00000002593	Smarca1	95	95.772	Jaculus_jaculus
ENSSBOG00000020641	SMARCA1	99	83.640	ENSKMAG00000003777	smarca5	94	83.640	Kryptolebias_marmoratus
ENSSBOG00000020641	SMARCA1	94	84.348	ENSLBEG00000013295	SMARCA1	100	84.829	Labrus_bergylta
ENSSBOG00000020641	SMARCA1	99	83.044	ENSLBEG00000018112	smarca5	94	83.044	Labrus_bergylta
ENSSBOG00000020641	SMARCA1	100	90.816	ENSLACG00000016697	SMARCA1	98	89.032	Latimeria_chalumnae
ENSSBOG00000020641	SMARCA1	100	89.490	ENSLOCG00000014591	smarca1	98	87.291	Lepisosteus_oculatus
ENSSBOG00000020641	SMARCA1	100	97.059	ENSLAFG00000000896	SMARCA1	100	95.481	Loxodonta_africana
ENSSBOG00000020641	SMARCA1	100	99.796	ENSMFAG00000002117	SMARCA1	99	96.749	Macaca_fascicularis
ENSSBOG00000020641	SMARCA1	100	98.589	ENSMMUG00000008818	SMARCA1	99	99.162	Macaca_mulatta
ENSSBOG00000020641	SMARCA1	100	98.589	ENSMNEG00000041768	SMARCA1	99	96.749	Macaca_nemestrina
ENSSBOG00000020641	SMARCA1	100	99.694	ENSMLEG00000043198	SMARCA1	96	98.161	Mandrillus_leucophaeus
ENSSBOG00000020641	SMARCA1	99	83.845	ENSMAMG00000014294	smarca5	94	83.845	Mastacembelus_armatus
ENSSBOG00000020641	SMARCA1	99	83.845	ENSMZEG00005009369	smarca5	94	83.845	Maylandia_zebra
ENSSBOG00000020641	SMARCA1	100	91.935	ENSMGAG00000007042	SMARCA1	99	91.304	Meleagris_gallopavo
ENSSBOG00000020641	SMARCA1	98	96.881	ENSMAUG00000008133	Smarca1	95	95.248	Mesocricetus_auratus
ENSSBOG00000020641	SMARCA1	100	99.184	ENSMICG00000015768	SMARCA1	95	98.715	Microcebus_murinus
ENSSBOG00000020641	SMARCA1	100	96.751	ENSMOCG00000009464	Smarca1	95	95.347	Microtus_ochrogaster
ENSSBOG00000020641	SMARCA1	99	81.800	ENSMMOG00000005547	smarca5	98	81.800	Mola_mola
ENSSBOG00000020641	SMARCA1	100	92.245	ENSMODG00000013187	-	98	89.040	Monodelphis_domestica
ENSSBOG00000020641	SMARCA1	99	83.231	ENSMALG00000002081	smarca5	96	83.646	Monopterus_albus
ENSSBOG00000020641	SMARCA1	100	97.157	MGP_CAROLIEiJ_G0033034	Smarca1	93	97.157	Mus_caroli
ENSSBOG00000020641	SMARCA1	100	97.157	ENSMUSG00000031099	Smarca1	96	94.220	Mus_musculus
ENSSBOG00000020641	SMARCA1	100	97.056	MGP_PahariEiJ_G0031579	Smarca1	96	94.123	Mus_pahari
ENSSBOG00000020641	SMARCA1	100	97.157	MGP_SPRETEiJ_G0034192	Smarca1	96	94.220	Mus_spretus
ENSSBOG00000020641	SMARCA1	100	97.581	ENSMPUG00000017423	SMARCA1	91	97.292	Mustela_putorius_furo
ENSSBOG00000020641	SMARCA1	100	95.674	ENSMLUG00000029614	SMARCA1	96	94.106	Myotis_lucifugus
ENSSBOG00000020641	SMARCA1	98	98.129	ENSNGAG00000006492	Smarca1	95	97.015	Nannospalax_galili
ENSSBOG00000020641	SMARCA1	99	83.947	ENSNBRG00000004463	smarca5	98	83.947	Neolamprologus_brichardi
ENSSBOG00000020641	SMARCA1	100	97.782	ENSNLEG00000015179	SMARCA1	98	97.384	Nomascus_leucogenys
ENSSBOG00000020641	SMARCA1	94	82.511	ENSMEUG00000008819	SMARCA1	100	81.933	Notamacropus_eugenii
ENSSBOG00000020641	SMARCA1	98	96.285	ENSODEG00000012163	SMARCA1	95	95.916	Octodon_degus
ENSSBOG00000020641	SMARCA1	99	83.947	ENSONIG00000009993	smarca5	94	83.947	Oreochromis_niloticus
ENSSBOG00000020641	SMARCA1	99	93.724	ENSOANG00000002862	SMARCA1	100	93.724	Ornithorhynchus_anatinus
ENSSBOG00000020641	SMARCA1	100	97.857	ENSOCUG00000001047	SMARCA1	93	97.857	Oryctolagus_cuniculus
ENSSBOG00000020641	SMARCA1	99	83.538	ENSORLG00000021998	smarca5	94	83.538	Oryzias_latipes
ENSSBOG00000020641	SMARCA1	99	83.640	ENSORLG00020017679	smarca5	94	83.640	Oryzias_latipes_hni
ENSSBOG00000020641	SMARCA1	99	83.538	ENSORLG00015017210	smarca5	94	83.538	Oryzias_latipes_hsok
ENSSBOG00000020641	SMARCA1	99	83.538	ENSOMEG00000000086	smarca5	94	83.538	Oryzias_melastigma
ENSSBOG00000020641	SMARCA1	98	97.936	ENSOGAG00000004399	SMARCA1	95	97.030	Otolemur_garnettii
ENSSBOG00000020641	SMARCA1	100	98.673	ENSOARG00000014638	SMARCA1	100	98.673	Ovis_aries
ENSSBOG00000020641	SMARCA1	100	99.796	ENSPPAG00000034647	SMARCA1	96	98.258	Pan_paniscus
ENSSBOG00000020641	SMARCA1	100	98.980	ENSPPRG00000008929	SMARCA1	96	97.289	Panthera_pardus
ENSSBOG00000020641	SMARCA1	100	96.790	ENSPTIG00000000915	SMARCA1	98	97.053	Panthera_tigris_altaica
ENSSBOG00000020641	SMARCA1	100	99.796	ENSPTRG00000049876	SMARCA1	96	98.258	Pan_troglodytes
ENSSBOG00000020641	SMARCA1	100	99.796	ENSPANG00000003871	SMARCA1	96	98.258	Papio_anubis
ENSSBOG00000020641	SMARCA1	95	88.185	ENSPKIG00000013411	smarca1	96	87.975	Paramormyrops_kingsleyae
ENSSBOG00000020641	SMARCA1	99	93.107	ENSPSIG00000010101	SMARCA1	100	93.107	Pelodiscus_sinensis
ENSSBOG00000020641	SMARCA1	98	97.505	ENSPEMG00000017503	Smarca1	95	96.040	Peromyscus_maniculatus_bairdii
ENSSBOG00000020641	SMARCA1	100	92.857	ENSPCIG00000015460	SMARCA1	99	90.748	Phascolarctos_cinereus
ENSSBOG00000020641	SMARCA1	99	83.640	ENSPFOG00000007649	smarca5	94	83.640	Poecilia_formosa
ENSSBOG00000020641	SMARCA1	99	83.640	ENSPLAG00000003363	smarca5	94	83.640	Poecilia_latipinna
ENSSBOG00000020641	SMARCA1	99	83.538	ENSPMEG00000019849	smarca5	94	83.538	Poecilia_mexicana
ENSSBOG00000020641	SMARCA1	99	83.538	ENSPREG00000023250	smarca5	94	83.538	Poecilia_reticulata
ENSSBOG00000020641	SMARCA1	100	96.837	ENSPPYG00000020703	SMARCA1	96	94.385	Pongo_abelii
ENSSBOG00000020641	SMARCA1	82	89.189	ENSPCOG00000020722	SMARCA1	94	93.392	Propithecus_coquereli
ENSSBOG00000020641	SMARCA1	92	95.882	ENSPVAG00000003805	SMARCA1	90	97.169	Pteropus_vampyrus
ENSSBOG00000020641	SMARCA1	59	84.765	ENSPNYG00000012299	smarca5	92	82.667	Pundamilia_nyererei
ENSSBOG00000020641	SMARCA1	100	97.551	ENSRNOG00000003762	Smarca1	93	97.551	Rattus_norvegicus
ENSSBOG00000020641	SMARCA1	100	99.694	ENSRROG00000034167	SMARCA1	96	98.161	Rhinopithecus_roxellana
ENSSBOG00000020641	SMARCA1	99	86.639	ENSSHAG00000013518	SMARCA1	99	86.639	Sarcophilus_harrisii
ENSSBOG00000020641	SMARCA1	100	88.403	ENSSFOG00015009043	smarca1	98	86.535	Scleropages_formosus
ENSSBOG00000020641	SMARCA1	99	83.711	ENSSFOG00015016794	smarca5	100	83.711	Scleropages_formosus
ENSSBOG00000020641	SMARCA1	99	82.822	ENSSMAG00000004801	smarca5	94	82.822	Scophthalmus_maximus
ENSSBOG00000020641	SMARCA1	99	83.333	ENSSDUG00000020690	smarca5	99	79.347	Seriola_dumerili
ENSSBOG00000020641	SMARCA1	99	83.333	ENSSLDG00000025190	smarca5	99	79.347	Seriola_lalandi_dorsalis
ENSSBOG00000020641	SMARCA1	83	97.163	ENSSARG00000000842	SMARCA1	91	90.092	Sorex_araneus
ENSSBOG00000020641	SMARCA1	98	92.573	ENSSPUG00000000590	SMARCA1	93	92.573	Sphenodon_punctatus
ENSSBOG00000020641	SMARCA1	99	83.607	ENSSPAG00000002894	smarca5	97	84.026	Stegastes_partitus
ENSSBOG00000020641	SMARCA1	99	98.561	ENSSSCG00000012649	SMARCA1	94	98.561	Sus_scrofa
ENSSBOG00000020641	SMARCA1	100	92.653	ENSTGUG00000003899	-	99	92.653	Taeniopygia_guttata
ENSSBOG00000020641	SMARCA1	99	83.607	ENSTRUG00000014094	smarca5	94	83.607	Takifugu_rubripes
ENSSBOG00000020641	SMARCA1	99	82.480	ENSTNIG00000017717	smarca5	93	82.480	Tetraodon_nigroviridis
ENSSBOG00000020641	SMARCA1	91	96.128	ENSTBEG00000014973	SMARCA1	99	91.203	Tupaia_belangeri
ENSSBOG00000020641	SMARCA1	98	94.324	ENSTTRG00000006168	SMARCA1	99	95.117	Tursiops_truncatus
ENSSBOG00000020641	SMARCA1	100	98.673	ENSUAMG00000020201	SMARCA1	96	96.035	Ursus_americanus
ENSSBOG00000020641	SMARCA1	100	93.044	ENSUMAG00000004073	SMARCA1	97	98.540	Ursus_maritimus
ENSSBOG00000020641	SMARCA1	80	99.675	ENSVPAG00000010492	-	85	99.675	Vicugna_pacos
ENSSBOG00000020641	SMARCA1	100	98.980	ENSVVUG00000008878	SMARCA1	99	98.955	Vulpes_vulpes
ENSSBOG00000020641	SMARCA1	99	89.694	ENSXETG00000001526	smarca1	98	89.694	Xenopus_tropicalis
ENSSBOG00000020641	SMARCA1	99	83.436	ENSXCOG00000011170	smarca5	97	83.436	Xiphophorus_couchianus
ENSSBOG00000020641	SMARCA1	99	83.436	ENSXMAG00000009678	smarca5	97	84.978	Xiphophorus_maculatus