EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSBOG00000021960 (Gene tree)
Gene ID: 101048279
Gene Symbol: SF3A1
Alias: PRPF21|Prp21|SAP114|SF3a120
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Saimiri_boliviensis_boliviensis
Status: putative
Strand: Plus strand
Length: 19786 bases
Position: chrJH378206.1:1311444-1331229
Accession: 10765
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSBOP00000010497	PRP21_like_P	PF12230.8	3.6e-52	1	1
ENSSBOP00000010492	PRP21_like_P	PF12230.8	4.3e-52	1	1
ENSSBOP00000010458	PRP21_like_P	PF12230.8	1.3e-51	1	1
ENSSBOP00000010467	PRP21_like_P	PF12230.8	1.3e-51	1	1
ENSSBOP00000010458	Surp	PF01805.20	7.1e-38	1	2
ENSSBOP00000010458	Surp	PF01805.20	7.1e-38	2	2
ENSSBOP00000010467	Surp	PF01805.20	7.3e-38	1	2
ENSSBOP00000010467	Surp	PF01805.20	7.3e-38	2	2
ENSSBOP00000010497	Surp	PF01805.20	1.2e-20	1	1
ENSSBOP00000010492	Surp	PF01805.20	1.3e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSBOT00000027274	SF3A1-204	6187	XM_010349249	ENSSBOP00000010497	677 (aa)	XP_010347551	A0A2K6SSZ2
ENSSBOT00000027269	SF3A1-203	6304	-	ENSSBOP00000010492	716 (aa)	-	A0A2K6SSY7
ENSSBOT00000027235	SF3A1-201	2295	-	ENSSBOP00000010458	764 (aa)	-	A0A2K6SST7
ENSSBOT00000027244	SF3A1-202	2322	-	ENSSBOP00000010467	773 (aa)	-	A0A2K6SSW1

Gene Model

Click here to download ENSSBOG00000021960's gene model file

Pathways

Pathway ID	Pathway Name	Source
sbq03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSBOG00000021960's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSBOG00000021960	SF3A1	100	99.261	ENSG00000099995	SF3A1	97	95.090	Homo_sapiens
ENSSBOG00000021960	SF3A1	98	86.377	ENSAPOG00000020465	sf3a1	94	86.122	Acanthochromis_polyacanthus
ENSSBOG00000021960	SF3A1	100	99.261	ENSAMEG00000007737	SF3A1	97	95.090	Ailuropoda_melanoleuca
ENSSBOG00000021960	SF3A1	98	86.677	ENSACIG00000020672	sf3a1	94	86.122	Amphilophus_citrinellus
ENSSBOG00000021960	SF3A1	98	86.377	ENSAOCG00000003060	sf3a1	94	86.122	Amphiprion_ocellaris
ENSSBOG00000021960	SF3A1	98	86.527	ENSAPEG00000010735	sf3a1	94	86.259	Amphiprion_percula
ENSSBOG00000021960	SF3A1	98	86.078	ENSATEG00000021201	sf3a1	93	86.259	Anabas_testudineus
ENSSBOG00000021960	SF3A1	98	94.286	ENSAPLG00000009057	SF3A1	95	94.150	Anas_platyrhynchos
ENSSBOG00000021960	SF3A1	98	86.569	ENSACAG00000009415	SF3A1	93	88.298	Anolis_carolinensis
ENSSBOG00000021960	SF3A1	100	100.000	ENSANAG00000032045	SF3A1	97	95.607	Aotus_nancymaae
ENSSBOG00000021960	SF3A1	98	86.957	ENSACLG00000012622	sf3a1	93	86.512	Astatotilapia_calliptera
ENSSBOG00000021960	SF3A1	98	85.307	ENSAMXG00000005382	sf3a1	94	84.959	Astyanax_mexicanus
ENSSBOG00000021960	SF3A1	100	99.261	ENSBTAG00000003390	SF3A1	97	95.090	Bos_taurus
ENSSBOG00000021960	SF3A1	84	43.172	WBGene00004188	prp-21	89	42.747	Caenorhabditis_elegans
ENSSBOG00000021960	SF3A1	100	99.852	ENSCJAG00000010370	SF3A1	97	95.478	Callithrix_jacchus
ENSSBOG00000021960	SF3A1	100	99.261	ENSCAFG00000012559	SF3A1	97	95.090	Canis_familiaris
ENSSBOG00000021960	SF3A1	100	99.261	ENSCAFG00020000838	SF3A1	97	95.090	Canis_lupus_dingo
ENSSBOG00000021960	SF3A1	100	99.114	ENSCHIG00000018642	SF3A1	97	94.961	Capra_hircus
ENSSBOG00000021960	SF3A1	100	99.409	ENSTSYG00000004739	SF3A1	97	95.220	Carlito_syrichta
ENSSBOG00000021960	SF3A1	96	80.122	ENSCAPG00000015414	SF3A1	93	80.505	Cavia_aperea
ENSSBOG00000021960	SF3A1	100	99.114	ENSCPOG00000014589	SF3A1	97	94.832	Cavia_porcellus
ENSSBOG00000021960	SF3A1	100	100.000	ENSCCAG00000032006	SF3A1	97	95.607	Cebus_capucinus
ENSSBOG00000021960	SF3A1	100	99.409	ENSCATG00000029241	SF3A1	97	95.220	Cercocebus_atys
ENSSBOG00000021960	SF3A1	100	98.523	ENSCLAG00000006508	SF3A1	92	98.363	Chinchilla_lanigera
ENSSBOG00000021960	SF3A1	100	99.409	ENSCSAG00000009470	SF3A1	97	95.220	Chlorocebus_sabaeus
ENSSBOG00000021960	SF3A1	60	99.432	ENSCHOG00000005201	SF3A1	66	100.000	Choloepus_hoffmanni
ENSSBOG00000021960	SF3A1	98	92.771	ENSCPBG00000007595	SF3A1	93	92.643	Chrysemys_picta_bellii
ENSSBOG00000021960	SF3A1	97	50.599	ENSCING00000008526	-	68	56.115	Ciona_intestinalis
ENSSBOG00000021960	SF3A1	87	66.854	ENSCSAVG00000005608	-	87	62.712	Ciona_savignyi
ENSSBOG00000021960	SF3A1	100	99.409	ENSCANG00000033564	SF3A1	97	95.220	Colobus_angolensis_palliatus
ENSSBOG00000021960	SF3A1	100	98.523	ENSCGRG00001008933	Sf3a1	97	94.315	Cricetulus_griseus_chok1gshd
ENSSBOG00000021960	SF3A1	100	98.523	ENSCGRG00000006127	Sf3a1	97	94.315	Cricetulus_griseus_crigri
ENSSBOG00000021960	SF3A1	100	82.647	ENSCSEG00000010792	sf3a1	93	83.152	Cynoglossus_semilaevis
ENSSBOG00000021960	SF3A1	98	84.431	ENSCVAG00000004560	sf3a1	93	84.490	Cyprinodon_variegatus
ENSSBOG00000021960	SF3A1	99	84.352	ENSDARG00000041887	sf3a1	93	84.783	Danio_rerio
ENSSBOG00000021960	SF3A1	100	99.264	ENSDNOG00000010629	SF3A1	97	95.103	Dasypus_novemcinctus
ENSSBOG00000021960	SF3A1	100	99.409	ENSDORG00000005613	Sf3a1	97	95.220	Dipodomys_ordii
ENSSBOG00000021960	SF3A1	82	60.132	FBgn0266917	Sf3a1	80	58.801	Drosophila_melanogaster
ENSSBOG00000021960	SF3A1	86	99.314	ENSETEG00000017194	SF3A1	93	97.401	Echinops_telfairi
ENSSBOG00000021960	SF3A1	99	64.583	ENSEBUG00000001285	sf3a1	92	66.580	Eptatretus_burgeri
ENSSBOG00000021960	SF3A1	100	99.409	ENSEASG00005010254	SF3A1	97	95.090	Equus_asinus_asinus
ENSSBOG00000021960	SF3A1	100	99.409	ENSECAG00000023962	SF3A1	97	95.090	Equus_caballus
ENSSBOG00000021960	SF3A1	76	95.082	ENSEEUG00000003159	SF3A1	82	95.082	Erinaceus_europaeus
ENSSBOG00000021960	SF3A1	98	83.756	ENSELUG00000022578	sf3a1	94	83.740	Esox_lucius
ENSSBOG00000021960	SF3A1	100	99.261	ENSFCAG00000011932	SF3A1	97	95.090	Felis_catus
ENSSBOG00000021960	SF3A1	98	93.223	ENSFALG00000006944	SF3A1	93	93.460	Ficedula_albicollis
ENSSBOG00000021960	SF3A1	100	98.818	ENSFDAG00000009560	SF3A1	97	94.703	Fukomys_damarensis
ENSSBOG00000021960	SF3A1	98	86.015	ENSFHEG00000010866	sf3a1	93	85.578	Fundulus_heteroclitus
ENSSBOG00000021960	SF3A1	97	83.308	ENSGMOG00000016024	sf3a1	93	81.107	Gadus_morhua
ENSSBOG00000021960	SF3A1	98	94.277	ENSGALG00000007937	SF3A1	93	94.142	Gallus_gallus
ENSSBOG00000021960	SF3A1	98	85.180	ENSGAFG00000009111	sf3a1	93	84.762	Gambusia_affinis
ENSSBOG00000021960	SF3A1	99	83.556	ENSGACG00000011893	sf3a1	93	83.243	Gasterosteus_aculeatus
ENSSBOG00000021960	SF3A1	93	93.344	ENSGAGG00000000762	SF3A1	92	92.725	Gopherus_agassizii
ENSSBOG00000021960	SF3A1	100	99.261	ENSGGOG00000012631	SF3A1	97	95.090	Gorilla_gorilla
ENSSBOG00000021960	SF3A1	98	86.957	ENSHBUG00000015795	sf3a1	93	86.512	Haplochromis_burtoni
ENSSBOG00000021960	SF3A1	100	99.114	ENSHGLG00000007907	SF3A1	97	94.961	Heterocephalus_glaber_female
ENSSBOG00000021960	SF3A1	100	99.114	ENSHGLG00100013799	SF3A1	97	94.961	Heterocephalus_glaber_male
ENSSBOG00000021960	SF3A1	98	82.186	ENSHCOG00000015423	sf3a1	94	81.361	Hippocampus_comes
ENSSBOG00000021960	SF3A1	98	82.432	ENSIPUG00000002470	sf3a1	94	82.497	Ictalurus_punctatus
ENSSBOG00000021960	SF3A1	100	99.409	ENSSTOG00000013892	SF3A1	97	95.220	Ictidomys_tridecemlineatus
ENSSBOG00000021960	SF3A1	100	99.409	ENSJJAG00000022566	Sf3a1	97	94.968	Jaculus_jaculus
ENSSBOG00000021960	SF3A1	98	84.511	ENSKMAG00000002400	sf3a1	94	84.898	Kryptolebias_marmoratus
ENSSBOG00000021960	SF3A1	98	84.880	ENSLBEG00000022974	sf3a1	93	84.082	Labrus_bergylta
ENSSBOG00000021960	SF3A1	98	88.756	ENSLACG00000003565	SF3A1	93	88.195	Latimeria_chalumnae
ENSSBOG00000021960	SF3A1	98	87.087	ENSLOCG00000008251	sf3a1	93	86.450	Lepisosteus_oculatus
ENSSBOG00000021960	SF3A1	100	99.261	ENSLAFG00000000448	SF3A1	97	95.090	Loxodonta_africana
ENSSBOG00000021960	SF3A1	98	63.368	ENSLAFG00000026032	-	93	61.642	Loxodonta_africana
ENSSBOG00000021960	SF3A1	100	99.261	ENSMFAG00000031979	SF3A1	97	95.090	Macaca_fascicularis
ENSSBOG00000021960	SF3A1	100	99.261	ENSMMUG00000005547	SF3A1	97	95.090	Macaca_mulatta
ENSSBOG00000021960	SF3A1	100	99.114	ENSMNEG00000037229	SF3A1	97	94.961	Macaca_nemestrina
ENSSBOG00000021960	SF3A1	100	99.409	ENSMLEG00000041908	SF3A1	97	95.220	Mandrillus_leucophaeus
ENSSBOG00000021960	SF3A1	98	86.677	ENSMAMG00000006460	sf3a1	92	86.803	Mastacembelus_armatus
ENSSBOG00000021960	SF3A1	98	86.957	ENSMZEG00005009633	sf3a1	93	86.512	Maylandia_zebra
ENSSBOG00000021960	SF3A1	98	94.277	ENSMGAG00000001330	SF3A1	95	94.142	Meleagris_gallopavo
ENSSBOG00000021960	SF3A1	100	94.535	ENSMAUG00000020317	Sf3a1	97	93.617	Mesocricetus_auratus
ENSSBOG00000021960	SF3A1	100	99.409	ENSMICG00000010038	SF3A1	97	95.220	Microcebus_murinus
ENSSBOG00000021960	SF3A1	100	98.818	ENSMOCG00000008438	Sf3a1	97	94.574	Microtus_ochrogaster
ENSSBOG00000021960	SF3A1	95	86.025	ENSMMOG00000015588	sf3a1	93	82.721	Mola_mola
ENSSBOG00000021960	SF3A1	100	98.080	ENSMODG00000009270	SF3A1	93	97.954	Monodelphis_domestica
ENSSBOG00000021960	SF3A1	98	86.145	ENSMALG00000000148	sf3a1	99	85.695	Monopterus_albus
ENSSBOG00000021960	SF3A1	100	98.375	MGP_CAROLIEiJ_G0016029	Sf3a1	97	94.057	Mus_caroli
ENSSBOG00000021960	SF3A1	100	98.375	ENSMUSG00000002129	Sf3a1	97	94.057	Mus_musculus
ENSSBOG00000021960	SF3A1	100	98.227	MGP_PahariEiJ_G0016862	Sf3a1	97	93.928	Mus_pahari
ENSSBOG00000021960	SF3A1	100	98.375	MGP_SPRETEiJ_G0016870	Sf3a1	97	94.057	Mus_spretus
ENSSBOG00000021960	SF3A1	100	99.114	ENSMPUG00000013144	SF3A1	97	94.961	Mustela_putorius_furo
ENSSBOG00000021960	SF3A1	100	99.409	ENSMLUG00000002139	SF3A1	97	95.090	Myotis_lucifugus
ENSSBOG00000021960	SF3A1	100	98.966	ENSNGAG00000016977	Sf3a1	92	98.772	Nannospalax_galili
ENSSBOG00000021960	SF3A1	98	86.957	ENSNBRG00000016642	sf3a1	93	86.512	Neolamprologus_brichardi
ENSSBOG00000021960	SF3A1	100	99.409	ENSNLEG00000003686	SF3A1	97	95.220	Nomascus_leucogenys
ENSSBOG00000021960	SF3A1	94	86.414	ENSMEUG00000008741	SF3A1	92	87.286	Notamacropus_eugenii
ENSSBOG00000021960	SF3A1	100	99.409	ENSOPRG00000016636	SF3A1	92	99.181	Ochotona_princeps
ENSSBOG00000021960	SF3A1	100	99.114	ENSODEG00000002571	SF3A1	93	98.909	Octodon_degus
ENSSBOG00000021960	SF3A1	98	86.527	ENSONIG00000010848	sf3a1	94	85.850	Oreochromis_niloticus
ENSSBOG00000021960	SF3A1	100	99.409	ENSOCUG00000007633	SF3A1	92	99.181	Oryctolagus_cuniculus
ENSSBOG00000021960	SF3A1	94	83.780	ENSORLG00000013050	sf3a1	93	84.473	Oryzias_latipes
ENSSBOG00000021960	SF3A1	98	81.900	ENSORLG00020003236	sf3a1	88	84.615	Oryzias_latipes_hni
ENSSBOG00000021960	SF3A1	98	84.431	ENSORLG00015017411	sf3a1	93	84.898	Oryzias_latipes_hsok
ENSSBOG00000021960	SF3A1	98	84.581	ENSOMEG00000013362	sf3a1	93	84.218	Oryzias_melastigma
ENSSBOG00000021960	SF3A1	100	99.261	ENSOGAG00000012931	SF3A1	97	95.090	Otolemur_garnettii
ENSSBOG00000021960	SF3A1	100	97.046	ENSOARG00000006849	SF3A1	97	92.765	Ovis_aries
ENSSBOG00000021960	SF3A1	100	98.080	ENSPPAG00000041790	SF3A1	97	94.057	Pan_paniscus
ENSSBOG00000021960	SF3A1	100	99.261	ENSPPRG00000004391	SF3A1	97	95.090	Panthera_pardus
ENSSBOG00000021960	SF3A1	100	99.114	ENSPTIG00000000844	SF3A1	100	94.961	Panthera_tigris_altaica
ENSSBOG00000021960	SF3A1	100	99.261	ENSPTRG00000014240	SF3A1	97	95.090	Pan_troglodytes
ENSSBOG00000021960	SF3A1	100	99.409	ENSPANG00000020772	SF3A1	97	95.220	Papio_anubis
ENSSBOG00000021960	SF3A1	81	93.407	ENSPSIG00000012803	SF3A1	90	95.335	Pelodiscus_sinensis
ENSSBOG00000021960	SF3A1	98	83.808	ENSPMGG00000023096	sf3a1	96	83.470	Periophthalmus_magnuspinnatus
ENSSBOG00000021960	SF3A1	100	98.818	ENSPEMG00000009494	Sf3a1	97	94.574	Peromyscus_maniculatus_bairdii
ENSSBOG00000021960	SF3A1	64	80.244	ENSPMAG00000007139	-	83	78.340	Petromyzon_marinus
ENSSBOG00000021960	SF3A1	100	98.080	ENSPCIG00000022692	SF3A1	93	97.954	Phascolarctos_cinereus
ENSSBOG00000021960	SF3A1	99	85.052	ENSPFOG00000016768	sf3a1	93	78.990	Poecilia_formosa
ENSSBOG00000021960	SF3A1	98	85.479	ENSPLAG00000017268	sf3a1	93	85.034	Poecilia_latipinna
ENSSBOG00000021960	SF3A1	98	85.994	ENSPMEG00000019811	sf3a1	98	85.241	Poecilia_mexicana
ENSSBOG00000021960	SF3A1	98	85.629	ENSPREG00000010347	sf3a1	93	85.578	Poecilia_reticulata
ENSSBOG00000021960	SF3A1	100	99.409	ENSPPYG00000011707	SF3A1	97	95.220	Pongo_abelii
ENSSBOG00000021960	SF3A1	69	98.340	ENSPCAG00000003266	SF3A1	57	100.000	Procavia_capensis
ENSSBOG00000021960	SF3A1	100	99.409	ENSPCOG00000026630	SF3A1	97	95.220	Propithecus_coquereli
ENSSBOG00000021960	SF3A1	100	98.818	ENSPVAG00000017719	SF3A1	92	98.636	Pteropus_vampyrus
ENSSBOG00000021960	SF3A1	98	86.957	ENSPNYG00000018706	sf3a1	93	86.512	Pundamilia_nyererei
ENSSBOG00000021960	SF3A1	98	85.373	ENSPNAG00000003721	sf3a1	94	85.095	Pygocentrus_nattereri
ENSSBOG00000021960	SF3A1	100	98.523	ENSRNOG00000005218	Sf3a1	97	94.186	Rattus_norvegicus
ENSSBOG00000021960	SF3A1	100	99.409	ENSRBIG00000032167	SF3A1	97	95.220	Rhinopithecus_bieti
ENSSBOG00000021960	SF3A1	100	99.409	ENSRROG00000044908	SF3A1	97	95.220	Rhinopithecus_roxellana
ENSSBOG00000021960	SF3A1	98	95.023	ENSSHAG00000003666	SF3A1	93	95.089	Sarcophilus_harrisii
ENSSBOG00000021960	SF3A1	98	85.757	ENSSFOG00015004579	sf3a1	93	85.792	Scleropages_formosus
ENSSBOG00000021960	SF3A1	100	82.916	ENSSMAG00000004275	sf3a1	93	82.857	Scophthalmus_maximus
ENSSBOG00000021960	SF3A1	98	86.377	ENSSDUG00000022219	sf3a1	94	85.578	Seriola_dumerili
ENSSBOG00000021960	SF3A1	98	86.377	ENSSLDG00000012642	sf3a1	94	85.578	Seriola_lalandi_dorsalis
ENSSBOG00000021960	SF3A1	98	95.646	ENSSARG00000005960	SF3A1	100	91.731	Sorex_araneus
ENSSBOG00000021960	SF3A1	98	92.136	ENSSPUG00000018863	SF3A1	96	90.065	Sphenodon_punctatus
ENSSBOG00000021960	SF3A1	98	86.976	ENSSPAG00000011856	sf3a1	94	86.122	Stegastes_partitus
ENSSBOG00000021960	SF3A1	100	99.114	ENSSSCG00000010002	SF3A1	97	94.961	Sus_scrofa
ENSSBOG00000021960	SF3A1	98	94.294	ENSTGUG00000010547	SF3A1	95	94.158	Taeniopygia_guttata
ENSSBOG00000021960	SF3A1	98	82.635	ENSTRUG00000006118	sf3a1	94	82.041	Takifugu_rubripes
ENSSBOG00000021960	SF3A1	71	80.952	ENSTNIG00000005713	sf3a1	89	85.714	Tetraodon_nigroviridis
ENSSBOG00000021960	SF3A1	98	90.498	ENSTBEG00000012771	SF3A1	97	87.468	Tupaia_belangeri
ENSSBOG00000021960	SF3A1	99	99.260	ENSTTRG00000001535	SF3A1	97	94.323	Tursiops_truncatus
ENSSBOG00000021960	SF3A1	99	98.212	ENSUAMG00000006750	SF3A1	96	94.141	Ursus_americanus
ENSSBOG00000021960	SF3A1	100	99.409	ENSUMAG00000016665	SF3A1	100	95.716	Ursus_maritimus
ENSSBOG00000021960	SF3A1	100	99.261	ENSVVUG00000003075	SF3A1	97	95.090	Vulpes_vulpes
ENSSBOG00000021960	SF3A1	98	87.669	ENSXETG00000016144	sf3a1	92	86.803	Xenopus_tropicalis
ENSSBOG00000021960	SF3A1	98	85.030	ENSXCOG00000015653	sf3a1	93	84.490	Xiphophorus_couchianus
ENSSBOG00000021960	SF3A1	98	85.030	ENSXMAG00000002753	sf3a1	93	84.626	Xiphophorus_maculatus