EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSBOG00000022089 (Gene tree)
Gene ID: 101035823
Gene Symbol: CHD6
Alias: CHD5|FLJ22369|KIAA1335|RIGB|dJ620E11.1
Full Name: chromodomain helicase DNA binding protein 6
Gene Type: protein_coding
Species: Saimiri_boliviensis_boliviensis
Status: putative
Strand: Minus strand
Length: 162011 bases
Position: chrJH378189.1:3983336-4145346
Accession: 19057
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSBOP00000010867	ResIII	PF04851.15	2e-08	1	1
ENSSBOP00000010855	ResIII	PF04851.15	1e-07	1	1
ENSSBOP00000010823	ResIII	PF04851.15	1e-07	1	1
ENSSBOP00000010843	ResIII	PF04851.15	1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSBOT00000027601	CHD6-201	11156	XM_003936390	ENSSBOP00000010823	2716 (aa)	XP_003936439	A0A2K6STV6
ENSSBOT00000027645	CHD6-204	1653	-	ENSSBOP00000010867	550 (aa)	-	A0A2K6SU17
ENSSBOT00000027621	CHD6-202	8151	-	ENSSBOP00000010843	2716 (aa)	-	A0A2K6STX6
ENSSBOT00000027647	CHD6-205	1071	-	ENSSBOP00000010869	356 (aa)	-	A0A2K6STZ7
ENSSBOT00000027633	CHD6-203	8079	-	ENSSBOP00000010855	2692 (aa)	-	A0A2K6STY7

Gene Model

Click here to download ENSSBOG00000022089's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSBOG00000022089's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSBOG00000022089	CHD6	77	31.158	ENSSBOG00000032114	SMARCAD1	84	35.385
ENSSBOG00000022089	CHD6	84	39.596	ENSSBOG00000023754	-	60	32.487
ENSSBOG00000022089	CHD6	92	41.455	ENSSBOG00000020782	-	50	36.017
ENSSBOG00000022089	CHD6	75	40.048	ENSSBOG00000020641	SMARCA1	53	42.287
ENSSBOG00000022089	CHD6	99	72.894	ENSSBOG00000021462	CHD7	71	65.342
ENSSBOG00000022089	CHD6	99	72.344	ENSSBOG00000023442	CHD8	64	62.777
ENSSBOG00000022089	CHD6	99	71.743	ENSSBOG00000030240	CHD9	92	46.844
ENSSBOG00000022089	CHD6	87	42.885	ENSSBOG00000020719	CHD3	51	37.134

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSBOG00000022089	CHD6	100	96.944	ENSG00000124177	CHD6	99	100.000	Homo_sapiens
ENSSBOG00000022089	CHD6	99	82.418	ENSAPOG00000013736	chd6	67	72.336	Acanthochromis_polyacanthus
ENSSBOG00000022089	CHD6	99	93.394	ENSAMEG00000009496	CHD6	100	91.437	Ailuropoda_melanoleuca
ENSSBOG00000022089	CHD6	99	82.051	ENSATEG00000005608	chd6	62	77.395	Anabas_testudineus
ENSSBOG00000022089	CHD6	99	89.541	ENSAPLG00000015592	CHD6	100	72.392	Anas_platyrhynchos
ENSSBOG00000022089	CHD6	98	80.926	ENSACAG00000006842	CHD6	99	68.023	Anolis_carolinensis
ENSSBOG00000022089	CHD6	99	100.000	ENSANAG00000037548	CHD6	100	100.000	Aotus_nancymaae
ENSSBOG00000022089	CHD6	94	86.408	ENSAMXG00000009576	chd6	77	69.714	Astyanax_mexicanus
ENSSBOG00000022089	CHD6	99	93.211	ENSBTAG00000005733	CHD6	100	88.106	Bos_taurus
ENSSBOG00000022089	CHD6	99	99.817	ENSCJAG00000017920	CHD6	100	99.817	Callithrix_jacchus
ENSSBOG00000022089	CHD6	99	93.394	ENSCAFG00000009236	CHD6	100	91.437	Canis_familiaris
ENSSBOG00000022089	CHD6	99	97.985	ENSCAFG00020012906	CHD6	100	97.985	Canis_lupus_dingo
ENSSBOG00000022089	CHD6	99	93.578	ENSCHIG00000017606	CHD6	100	88.363	Capra_hircus
ENSSBOG00000022089	CHD6	84	92.277	ENSTSYG00000014635	CHD6	100	92.277	Carlito_syrichta
ENSSBOG00000022089	CHD6	99	93.394	ENSCPOG00000015641	CHD6	100	91.327	Cavia_porcellus
ENSSBOG00000022089	CHD6	99	100.000	ENSCCAG00000036828	CHD6	100	100.000	Cebus_capucinus
ENSSBOG00000022089	CHD6	99	100.000	ENSCATG00000039248	CHD6	100	100.000	Cercocebus_atys
ENSSBOG00000022089	CHD6	99	93.211	ENSCLAG00000013743	CHD6	100	90.942	Chinchilla_lanigera
ENSSBOG00000022089	CHD6	100	96.944	ENSCSAG00000013997	CHD6	100	96.944	Chlorocebus_sabaeus
ENSSBOG00000022089	CHD6	99	87.156	ENSCHOG00000012647	CHD6	95	89.855	Choloepus_hoffmanni
ENSSBOG00000022089	CHD6	99	89.358	ENSCPBG00000019382	CHD6	99	73.336	Chrysemys_picta_bellii
ENSSBOG00000022089	CHD6	99	100.000	ENSCANG00000043435	CHD6	100	100.000	Colobus_angolensis_palliatus
ENSSBOG00000022089	CHD6	99	91.376	ENSCGRG00001002694	Chd6	100	89.342	Cricetulus_griseus_chok1gshd
ENSSBOG00000022089	CHD6	99	97.253	ENSCGRG00000006749	-	100	97.253	Cricetulus_griseus_crigri
ENSSBOG00000022089	CHD6	91	88.956	ENSDARG00000017244	chd6	79	73.742	Danio_rerio
ENSSBOG00000022089	CHD6	99	92.844	ENSDNOG00000004176	CHD6	99	90.158	Dasypus_novemcinctus
ENSSBOG00000022089	CHD6	99	98.352	ENSEASG00005023433	CHD6	100	98.352	Equus_asinus_asinus
ENSSBOG00000022089	CHD6	99	93.394	ENSECAG00000011761	CHD6	100	92.240	Equus_caballus
ENSSBOG00000022089	CHD6	94	85.243	ENSELUG00000012309	chd6	92	80.092	Esox_lucius
ENSSBOG00000022089	CHD6	99	93.394	ENSFCAG00000003572	CHD6	100	91.657	Felis_catus
ENSSBOG00000022089	CHD6	99	88.991	ENSFALG00000012563	CHD6	98	71.055	Ficedula_albicollis
ENSSBOG00000022089	CHD6	99	92.661	ENSFDAG00000013791	CHD6	99	91.587	Fukomys_damarensis
ENSSBOG00000022089	CHD6	89	83.197	ENSGMOG00000011715	chd6	84	69.784	Gadus_morhua
ENSSBOG00000022089	CHD6	94	80.233	ENSGACG00000000037	chd6	86	69.294	Gasterosteus_aculeatus
ENSSBOG00000022089	CHD6	61	94.012	ENSGAGG00000007475	-	79	94.169	Gopherus_agassizii
ENSSBOG00000022089	CHD6	99	100.000	ENSGGOG00000013123	CHD6	100	100.000	Gorilla_gorilla
ENSSBOG00000022089	CHD6	99	81.319	ENSHBUG00000014701	chd6	65	73.239	Haplochromis_burtoni
ENSSBOG00000022089	CHD6	99	92.844	ENSHGLG00000004548	CHD6	100	91.624	Heterocephalus_glaber_female
ENSSBOG00000022089	CHD6	99	92.844	ENSHGLG00100006401	CHD6	100	91.624	Heterocephalus_glaber_male
ENSSBOG00000022089	CHD6	94	85.631	ENSIPUG00000003692	chd6	74	76.436	Ictalurus_punctatus
ENSSBOG00000022089	CHD6	99	93.394	ENSSTOG00000013382	CHD6	100	92.393	Ictidomys_tridecemlineatus
ENSSBOG00000022089	CHD6	99	84.404	ENSLACG00000010881	CHD6	87	76.450	Latimeria_chalumnae
ENSSBOG00000022089	CHD6	99	83.303	ENSLOCG00000007386	chd6	84	75.604	Lepisosteus_oculatus
ENSSBOG00000022089	CHD6	99	93.028	ENSLAFG00000012144	CHD6	100	91.587	Loxodonta_africana
ENSSBOG00000022089	CHD6	99	100.000	ENSMFAG00000032830	CHD6	100	100.000	Macaca_fascicularis
ENSSBOG00000022089	CHD6	99	100.000	ENSMMUG00000020458	CHD6	100	100.000	Macaca_mulatta
ENSSBOG00000022089	CHD6	99	100.000	ENSMNEG00000040847	CHD6	100	100.000	Macaca_nemestrina
ENSSBOG00000022089	CHD6	99	100.000	ENSMLEG00000031965	CHD6	100	100.000	Mandrillus_leucophaeus
ENSSBOG00000022089	CHD6	99	81.685	ENSMAMG00000013111	chd6	62	77.310	Mastacembelus_armatus
ENSSBOG00000022089	CHD6	99	89.011	ENSMGAG00000001121	CHD6	100	71.861	Meleagris_gallopavo
ENSSBOG00000022089	CHD6	99	99.084	ENSMICG00000016641	CHD6	100	99.084	Microcebus_murinus
ENSSBOG00000022089	CHD6	99	91.560	ENSMOCG00000014004	-	97	94.558	Microtus_ochrogaster
ENSSBOG00000022089	CHD6	99	91.743	ENSMODG00000000720	-	99	81.057	Monodelphis_domestica
ENSSBOG00000022089	CHD6	99	91.009	MGP_CAROLIEiJ_G0024604	Chd6	100	94.599	Mus_caroli
ENSSBOG00000022089	CHD6	99	91.009	ENSMUSG00000057133	Chd6	100	94.515	Mus_musculus
ENSSBOG00000022089	CHD6	99	91.193	MGP_PahariEiJ_G0026048	Chd6	100	94.937	Mus_pahari
ENSSBOG00000022089	CHD6	99	91.009	MGP_SPRETEiJ_G0025526	Chd6	100	94.599	Mus_spretus
ENSSBOG00000022089	CHD6	99	93.394	ENSMPUG00000017695	CHD6	100	89.993	Mustela_putorius_furo
ENSSBOG00000022089	CHD6	99	93.028	ENSMLUG00000016247	CHD6	100	90.702	Myotis_lucifugus
ENSSBOG00000022089	CHD6	98	81.550	ENSNBRG00000013839	chd6	78	73.112	Neolamprologus_brichardi
ENSSBOG00000022089	CHD6	100	95.505	ENSNLEG00000006496	CHD6	99	95.505	Nomascus_leucogenys
ENSSBOG00000022089	CHD6	100	87.505	ENSOPRG00000013376	-	100	87.505	Ochotona_princeps
ENSSBOG00000022089	CHD6	99	81.502	ENSONIG00000000393	chd6	85	73.717	Oreochromis_niloticus
ENSSBOG00000022089	CHD6	99	89.541	ENSOANG00000014347	CHD6	99	70.134	Ornithorhynchus_anatinus
ENSSBOG00000022089	CHD6	99	93.578	ENSOCUG00000012394	CHD6	100	89.776	Oryctolagus_cuniculus
ENSSBOG00000022089	CHD6	99	80.699	ENSORLG00020021891	chd6	99	84.571	Oryzias_latipes_hni
ENSSBOG00000022089	CHD6	99	93.211	ENSOGAG00000002427	CHD6	100	91.311	Otolemur_garnettii
ENSSBOG00000022089	CHD6	99	93.578	ENSOARG00000002597	CHD6	100	86.150	Ovis_aries
ENSSBOG00000022089	CHD6	99	93.394	ENSPPRG00000014756	CHD6	100	91.768	Panthera_pardus
ENSSBOG00000022089	CHD6	99	93.394	ENSPTIG00000011094	CHD6	100	91.657	Panthera_tigris_altaica
ENSSBOG00000022089	CHD6	99	100.000	ENSPTRG00000013504	CHD6	99	100.000	Pan_troglodytes
ENSSBOG00000022089	CHD6	99	99.817	ENSPANG00000025554	CHD6	100	99.817	Papio_anubis
ENSSBOG00000022089	CHD6	94	86.990	ENSPKIG00000005578	chd6	79	72.861	Paramormyrops_kingsleyae
ENSSBOG00000022089	CHD6	99	82.202	ENSPMGG00000014877	chd6	88	77.022	Periophthalmus_magnuspinnatus
ENSSBOG00000022089	CHD6	99	97.253	ENSPEMG00000014672	-	100	97.253	Peromyscus_maniculatus_bairdii
ENSSBOG00000022089	CHD6	99	91.743	ENSPCIG00000028037	CHD6	100	80.638	Phascolarctos_cinereus
ENSSBOG00000022089	CHD6	99	81.319	ENSPLAG00000003128	chd6	68	73.025	Poecilia_latipinna
ENSSBOG00000022089	CHD6	99	81.319	ENSPREG00000022653	chd6	99	86.447	Poecilia_reticulata
ENSSBOG00000022089	CHD6	100	97.056	ENSPPYG00000011016	CHD6	100	97.056	Pongo_abelii
ENSSBOG00000022089	CHD6	99	99.634	ENSPCOG00000001089	CHD6	100	99.634	Propithecus_coquereli
ENSSBOG00000022089	CHD6	99	81.319	ENSPNYG00000022516	chd6	78	74.366	Pundamilia_nyererei
ENSSBOG00000022089	CHD6	94	86.990	ENSPNAG00000012825	chd6	79	71.083	Pygocentrus_nattereri
ENSSBOG00000022089	CHD6	99	90.826	ENSRNOG00000016744	Chd6	100	87.358	Rattus_norvegicus
ENSSBOG00000022089	CHD6	99	91.560	ENSSHAG00000017072	CHD6	100	80.169	Sarcophilus_harrisii
ENSSBOG00000022089	CHD6	94	86.990	ENSSFOG00015012920	chd6	81	73.439	Scleropages_formosus
ENSSBOG00000022089	CHD6	83	99.782	ENSSARG00000002615	-	61	99.342	Sorex_araneus
ENSSBOG00000022089	CHD6	99	93.394	ENSSSCG00000007360	CHD6	100	91.031	Sus_scrofa
ENSSBOG00000022089	CHD6	99	89.358	ENSTGUG00000003179	CHD6	99	73.538	Taeniopygia_guttata
ENSSBOG00000022089	CHD6	99	80.220	ENSTNIG00000017487	chd6	86	77.257	Tetraodon_nigroviridis
ENSSBOG00000022089	CHD6	99	91.376	ENSTTRG00000013438	CHD6	100	87.812	Tursiops_truncatus
ENSSBOG00000022089	CHD6	99	97.985	ENSUAMG00000024036	CHD6	100	97.985	Ursus_americanus
ENSSBOG00000022089	CHD6	99	97.985	ENSUMAG00000002017	CHD6	100	97.985	Ursus_maritimus
ENSSBOG00000022089	CHD6	97	88.037	ENSVPAG00000007941	CHD6	93	89.596	Vicugna_pacos
ENSSBOG00000022089	CHD6	99	93.394	ENSVVUG00000029164	CHD6	100	91.547	Vulpes_vulpes
ENSSBOG00000022089	CHD6	99	64.037	ENSXETG00000021445	chd6	89	69.871	Xenopus_tropicalis