EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSBOG00000022455 (Gene tree)
Gene ID: 101034609
Gene Symbol: LSM4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Saimiri_boliviensis_boliviensis
Status: putative
Strand: Minus strand
Length: 5684 bases
Position: chrJH378262.1:2436056-2441739
Accession: 17259
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSBOP00000011293	LSM	PF01423.22	1.2e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSBOT00000028075	LSM4-201	1621	XM_010330149	ENSSBOP00000011293	125 (aa)	XP_010328451	A0A2K6SV84
ENSSBOT00000028094	LSM4-202	309	-	ENSSBOP00000011313	102 (aa)	-	A0A2K6SVA2

Gene Model

Click here to download ENSSBOG00000022455's gene model file

Pathways

Pathway ID	Pathway Name	Source
sbq03018	RNA degradation	KEGG
sbq03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSBOG00000022455's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSBOG00000022455	LSM4	66	32.558	ENSSBOG00000018943	LSM2	67	36.364

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSBOG00000022455	LSM4	100	100.000	ENSG00000130520	LSM4	100	100.000	Homo_sapiens
ENSSBOG00000022455	LSM4	100	100.000	ENSAMEG00000011162	LSM4	86	100.000	Ailuropoda_melanoleuca
ENSSBOG00000022455	LSM4	98	75.194	ENSAOCG00000006414	lsm4	50	98.649	Amphiprion_ocellaris
ENSSBOG00000022455	LSM4	98	72.308	ENSAPEG00000006238	lsm4	50	98.649	Amphiprion_percula
ENSSBOG00000022455	LSM4	100	100.000	ENSANAG00000034659	LSM4	100	100.000	Aotus_nancymaae
ENSSBOG00000022455	LSM4	77	81.818	ENSACLG00000022738	lsm4	50	98.649	Astatotilapia_calliptera
ENSSBOG00000022455	LSM4	98	78.226	ENSAMXG00000016932	lsm4	52	97.297	Astyanax_mexicanus
ENSSBOG00000022455	LSM4	100	100.000	ENSBTAG00000008578	LSM4	90	100.000	Bos_taurus
ENSSBOG00000022455	LSM4	55	72.464	WBGene00003078	lsm-4	56	72.464	Caenorhabditis_elegans
ENSSBOG00000022455	LSM4	100	100.000	ENSCJAG00000014171	LSM4	100	100.000	Callithrix_jacchus
ENSSBOG00000022455	LSM4	99	100.000	ENSCAFG00000014900	LSM4	81	100.000	Canis_familiaris
ENSSBOG00000022455	LSM4	100	100.000	ENSCAFG00020012137	LSM4	90	100.000	Canis_lupus_dingo
ENSSBOG00000022455	LSM4	100	100.000	ENSCHIG00000010928	LSM4	83	100.000	Capra_hircus
ENSSBOG00000022455	LSM4	100	99.200	ENSTSYG00000030906	LSM4	100	99.200	Carlito_syrichta
ENSSBOG00000022455	LSM4	100	97.600	ENSCAPG00000014140	LSM4	90	97.600	Cavia_aperea
ENSSBOG00000022455	LSM4	100	97.600	ENSCPOG00000024117	LSM4	90	97.600	Cavia_porcellus
ENSSBOG00000022455	LSM4	100	100.000	ENSCCAG00000036308	LSM4	100	100.000	Cebus_capucinus
ENSSBOG00000022455	LSM4	100	100.000	ENSCATG00000029311	LSM4	100	100.000	Cercocebus_atys
ENSSBOG00000022455	LSM4	100	96.000	ENSCLAG00000010828	LSM4	90	96.000	Chinchilla_lanigera
ENSSBOG00000022455	LSM4	100	100.000	ENSCSAG00000005370	LSM4	90	100.000	Chlorocebus_sabaeus
ENSSBOG00000022455	LSM4	100	80.000	ENSCPBG00000012925	LSM4	90	88.800	Chrysemys_picta_bellii
ENSSBOG00000022455	LSM4	58	91.667	ENSCING00000007519	-	58	91.892	Ciona_intestinalis
ENSSBOG00000022455	LSM4	58	93.056	ENSCSAVG00000008596	-	59	93.243	Ciona_savignyi
ENSSBOG00000022455	LSM4	100	100.000	ENSCANG00000043686	LSM4	100	100.000	Colobus_angolensis_palliatus
ENSSBOG00000022455	LSM4	100	95.200	ENSCGRG00001014436	Lsm4	90	95.200	Cricetulus_griseus_chok1gshd
ENSSBOG00000022455	LSM4	100	95.200	ENSCGRG00000009398	Lsm4	91	95.200	Cricetulus_griseus_crigri
ENSSBOG00000022455	LSM4	66	95.181	ENSCSEG00000016127	lsm4	52	97.297	Cynoglossus_semilaevis
ENSSBOG00000022455	LSM4	98	75.000	ENSCVAG00000010601	lsm4	52	97.297	Cyprinodon_variegatus
ENSSBOG00000022455	LSM4	98	74.797	ENSCVAG00000021828	lsm4	56	97.260	Cyprinodon_variegatus
ENSSBOG00000022455	LSM4	97	76.378	ENSDARG00000023852	lsm4	57	98.649	Danio_rerio
ENSSBOG00000022455	LSM4	100	97.600	ENSDORG00000024225	Lsm4	90	97.600	Dipodomys_ordii
ENSSBOG00000022455	LSM4	99	98.387	ENSETEG00000007762	-	100	98.387	Echinops_telfairi
ENSSBOG00000022455	LSM4	100	100.000	ENSECAG00000010141	LSM4	51	100.000	Equus_caballus
ENSSBOG00000022455	LSM4	95	82.645	ENSELUG00000012821	lsm4	56	98.649	Esox_lucius
ENSSBOG00000022455	LSM4	100	100.000	ENSFCAG00000040580	LSM4	100	100.000	Felis_catus
ENSSBOG00000022455	LSM4	100	79.200	ENSFALG00000009478	LSM4	90	88.800	Ficedula_albicollis
ENSSBOG00000022455	LSM4	100	96.800	ENSFDAG00000010124	LSM4	91	96.800	Fukomys_damarensis
ENSSBOG00000022455	LSM4	66	96.386	ENSGMOG00000007729	lsm4	50	98.649	Gadus_morhua
ENSSBOG00000022455	LSM4	100	79.200	ENSGALG00000003385	LSM4	90	88.800	Gallus_gallus
ENSSBOG00000022455	LSM4	77	80.909	ENSGAFG00000004903	lsm4	55	94.521	Gambusia_affinis
ENSSBOG00000022455	LSM4	100	80.000	ENSGAGG00000017812	LSM4	90	88.800	Gopherus_agassizii
ENSSBOG00000022455	LSM4	100	100.000	ENSGGOG00000012914	-	100	100.000	Gorilla_gorilla
ENSSBOG00000022455	LSM4	100	96.800	ENSHGLG00000006568	LSM4	90	96.800	Heterocephalus_glaber_female
ENSSBOG00000022455	LSM4	63	100.000	ENSHGLG00100007894	LSM4	85	100.000	Heterocephalus_glaber_male
ENSSBOG00000022455	LSM4	98	74.797	ENSHCOG00000008819	lsm4	52	98.649	Hippocampus_comes
ENSSBOG00000022455	LSM4	98	78.226	ENSIPUG00000005368	Lsm4	52	98.649	Ictalurus_punctatus
ENSSBOG00000022455	LSM4	100	100.000	ENSSTOG00000016494	LSM4	90	100.000	Ictidomys_tridecemlineatus
ENSSBOG00000022455	LSM4	100	96.800	ENSJJAG00000017420	Lsm4	90	96.800	Jaculus_jaculus
ENSSBOG00000022455	LSM4	58	97.222	ENSKMAG00000005073	lsm4	51	97.297	Kryptolebias_marmoratus
ENSSBOG00000022455	LSM4	68	96.471	ENSLBEG00000027930	lsm4	50	98.649	Labrus_bergylta
ENSSBOG00000022455	LSM4	98	81.301	ENSLACG00000015861	LSM4	88	81.301	Latimeria_chalumnae
ENSSBOG00000022455	LSM4	92	81.739	ENSLOCG00000002025	lsm4	52	97.297	Lepisosteus_oculatus
ENSSBOG00000022455	LSM4	100	98.400	ENSLAFG00000017459	LSM4	90	98.400	Loxodonta_africana
ENSSBOG00000022455	LSM4	100	100.000	ENSMFAG00000031194	LSM4	100	100.000	Macaca_fascicularis
ENSSBOG00000022455	LSM4	100	100.000	ENSMMUG00000004405	LSM4	100	100.000	Macaca_mulatta
ENSSBOG00000022455	LSM4	100	100.000	ENSMNEG00000042899	LSM4	100	100.000	Macaca_nemestrina
ENSSBOG00000022455	LSM4	100	100.000	ENSMLEG00000027948	LSM4	100	100.000	Mandrillus_leucophaeus
ENSSBOG00000022455	LSM4	98	77.419	ENSMAMG00000006190	lsm4	52	98.649	Mastacembelus_armatus
ENSSBOG00000022455	LSM4	77	81.818	ENSMZEG00005016420	lsm4	51	98.649	Maylandia_zebra
ENSSBOG00000022455	LSM4	100	80.952	ENSMGAG00000004976	LSM4	90	88.800	Meleagris_gallopavo
ENSSBOG00000022455	LSM4	100	99.200	ENSMICG00000000222	LSM4	100	99.200	Microcebus_murinus
ENSSBOG00000022455	LSM4	100	96.000	ENSMOCG00000020861	Lsm4	90	96.000	Microtus_ochrogaster
ENSSBOG00000022455	LSM4	99	95.968	ENSMODG00000015044	-	100	95.968	Monodelphis_domestica
ENSSBOG00000022455	LSM4	98	74.603	ENSMALG00000018159	lsm4	52	97.297	Monopterus_albus
ENSSBOG00000022455	LSM4	100	96.000	MGP_CAROLIEiJ_G0031158	Lsm4	90	96.000	Mus_caroli
ENSSBOG00000022455	LSM4	100	96.000	ENSMUSG00000031848	Lsm4	90	96.000	Mus_musculus
ENSSBOG00000022455	LSM4	100	96.000	MGP_PahariEiJ_G0021623	Lsm4	90	96.000	Mus_pahari
ENSSBOG00000022455	LSM4	100	96.000	MGP_SPRETEiJ_G0032276	Lsm4	90	96.000	Mus_spretus
ENSSBOG00000022455	LSM4	100	100.000	ENSMPUG00000015589	LSM4	90	100.000	Mustela_putorius_furo
ENSSBOG00000022455	LSM4	100	100.000	ENSMLUG00000004010	LSM4	90	100.000	Myotis_lucifugus
ENSSBOG00000022455	LSM4	100	96.000	ENSNGAG00000008644	Lsm4	94	96.000	Nannospalax_galili
ENSSBOG00000022455	LSM4	99	92.742	ENSMEUG00000013229	LSM4	100	92.742	Notamacropus_eugenii
ENSSBOG00000022455	LSM4	99	93.548	ENSOPRG00000005575	LSM4	100	83.065	Ochotona_princeps
ENSSBOG00000022455	LSM4	100	70.400	ENSODEG00000011712	-	87	70.400	Octodon_degus
ENSSBOG00000022455	LSM4	100	96.800	ENSODEG00000020549	-	90	96.800	Octodon_degus
ENSSBOG00000022455	LSM4	100	86.400	ENSODEG00000004519	-	90	72.800	Octodon_degus
ENSSBOG00000022455	LSM4	77	81.818	ENSONIG00000012724	lsm4	50	98.649	Oreochromis_niloticus
ENSSBOG00000022455	LSM4	58	98.630	ENSOANG00000007434	LSM4	63	98.630	Ornithorhynchus_anatinus
ENSSBOG00000022455	LSM4	98	82.677	ENSORLG00000008391	lsm4	51	97.297	Oryzias_latipes
ENSSBOG00000022455	LSM4	98	70.073	ENSORLG00020014829	lsm4	51	97.297	Oryzias_latipes_hni
ENSSBOG00000022455	LSM4	98	77.165	ENSORLG00015010205	lsm4	51	97.297	Oryzias_latipes_hsok
ENSSBOG00000022455	LSM4	100	80.800	ENSOMEG00000003606	lsm4	51	97.297	Oryzias_melastigma
ENSSBOG00000022455	LSM4	69	98.837	ENSOGAG00000027992	LSM4	51	100.000	Otolemur_garnettii
ENSSBOG00000022455	LSM4	95	100.000	ENSOARG00000012553	LSM4	94	100.000	Ovis_aries
ENSSBOG00000022455	LSM4	100	100.000	ENSPPAG00000044045	-	100	100.000	Pan_paniscus
ENSSBOG00000022455	LSM4	100	100.000	ENSPPRG00000018264	LSM4	100	100.000	Panthera_pardus
ENSSBOG00000022455	LSM4	100	100.000	ENSPTIG00000006306	LSM4	91	100.000	Panthera_tigris_altaica
ENSSBOG00000022455	LSM4	100	100.000	ENSPTRG00000031470	LSM4	100	100.000	Pan_troglodytes
ENSSBOG00000022455	LSM4	100	100.000	ENSPANG00000014399	LSM4	100	100.000	Papio_anubis
ENSSBOG00000022455	LSM4	98	79.675	ENSPKIG00000006154	lsm4	57	98.630	Paramormyrops_kingsleyae
ENSSBOG00000022455	LSM4	100	79.200	ENSPSIG00000012358	LSM4	91	88.800	Pelodiscus_sinensis
ENSSBOG00000022455	LSM4	100	96.000	ENSPEMG00000001358	Lsm4	90	96.000	Peromyscus_maniculatus_bairdii
ENSSBOG00000022455	LSM4	98	73.846	ENSPLAG00000016267	lsm4	52	98.649	Poecilia_latipinna
ENSSBOG00000022455	LSM4	98	76.190	ENSPMEG00000016378	lsm4	53	98.649	Poecilia_mexicana
ENSSBOG00000022455	LSM4	100	100.000	ENSPPYG00000009736	LSM4	90	100.000	Pongo_abelii
ENSSBOG00000022455	LSM4	99	98.387	ENSPCAG00000008513	LSM4	100	98.387	Procavia_capensis
ENSSBOG00000022455	LSM4	100	99.200	ENSPCOG00000019837	LSM4	100	99.200	Propithecus_coquereli
ENSSBOG00000022455	LSM4	100	100.000	ENSPVAG00000015383	LSM4	90	100.000	Pteropus_vampyrus
ENSSBOG00000022455	LSM4	77	81.818	ENSPNYG00000016794	lsm4	51	98.649	Pundamilia_nyererei
ENSSBOG00000022455	LSM4	96	81.818	ENSPNAG00000016598	lsm4	55	98.649	Pygocentrus_nattereri
ENSSBOG00000022455	LSM4	100	96.000	ENSRNOG00000019572	Lsm4	90	96.000	Rattus_norvegicus
ENSSBOG00000022455	LSM4	100	100.000	ENSRBIG00000024717	LSM4	100	100.000	Rhinopithecus_bieti
ENSSBOG00000022455	LSM4	100	100.000	ENSRROG00000045706	LSM4	100	100.000	Rhinopithecus_roxellana
ENSSBOG00000022455	LSM4	100	96.000	ENSSHAG00000011559	LSM4	90	96.000	Sarcophilus_harrisii
ENSSBOG00000022455	LSM4	98	78.049	ENSSFOG00015021067	lsm4	52	98.649	Scleropages_formosus
ENSSBOG00000022455	LSM4	99	68.750	ENSSMAG00000021020	lsm4	85	70.312	Scophthalmus_maximus
ENSSBOG00000022455	LSM4	100	100.000	ENSSSCG00000034314	LSM4	90	100.000	Sus_scrofa
ENSSBOG00000022455	LSM4	77	79.091	ENSTRUG00000021737	lsm4	52	95.946	Takifugu_rubripes
ENSSBOG00000022455	LSM4	98	78.571	ENSTNIG00000010191	lsm4	51	97.297	Tetraodon_nigroviridis
ENSSBOG00000022455	LSM4	100	100.000	ENSUAMG00000000665	LSM4	90	100.000	Ursus_americanus
ENSSBOG00000022455	LSM4	100	100.000	ENSUMAG00000009013	LSM4	90	100.000	Ursus_maritimus
ENSSBOG00000022455	LSM4	100	100.000	ENSVVUG00000008136	LSM4	64	100.000	Vulpes_vulpes
ENSSBOG00000022455	LSM4	100	90.400	ENSXETG00000024933	lsm4	90	88.000	Xenopus_tropicalis