EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSBOG00000022518 (Gene tree)
Gene ID: 101044414
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Saimiri_boliviensis_boliviensis
Status: putative
Strand: Plus strand
Length: 258957 bases
Position: chrJH378158.1:5207471-5466427
Accession: 17809
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSBOP00000011609	EST1	PF10374.9	6.3e-14	1	1
ENSSBOP00000011576	EST1	PF10374.9	8.2e-14	1	1
ENSSBOP00000011609	EST1_DNA_bind	PF10373.9	1.8e-59	1	1
ENSSBOP00000011580	EST1_DNA_bind	PF10373.9	2.3e-59	1	1
ENSSBOP00000011576	EST1_DNA_bind	PF10373.9	2.3e-59	1	1
ENSSBOP00000011580	PIN_4	PF13638.6	6.3e-22	1	1
ENSSBOP00000011576	PIN_4	PF13638.6	6.7e-22	1	1
ENSSBOP00000011609	PIN_4	PF13638.6	4.5e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSBOT00000028366	SMG6-202	8597	XM_010343668	ENSSBOP00000011580	1562 (aa)	XP_010341970	A0A2K6SW22
ENSSBOT00000028361	SMG6-201	8708	XM_003933086	ENSSBOP00000011576	1599 (aa)	XP_003933135	A0A2K6SW15
ENSSBOT00000028395	SMG6-203	4227	-	ENSSBOP00000011609	1408 (aa)	-	A0A2K6SW41

Gene Model

Click here to download ENSSBOG00000022518's gene model file

Pathways

Pathway ID	Pathway Name	Source
sbq03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSBOG00000022518's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSBOG00000022518	SMG6	100	93.517	ENSG00000070366	SMG6	100	98.551	Homo_sapiens
ENSSBOG00000022518	SMG6	71	57.678	ENSAPOG00000019448	smg6	74	54.510	Acanthochromis_polyacanthus
ENSSBOG00000022518	SMG6	100	91.473	ENSAMEG00000007632	SMG6	100	93.164	Ailuropoda_melanoleuca
ENSSBOG00000022518	SMG6	63	57.987	ENSACIG00000012997	smg6	78	55.378	Amphilophus_citrinellus
ENSSBOG00000022518	SMG6	71	57.470	ENSAOCG00000002630	smg6	74	54.766	Amphiprion_ocellaris
ENSSBOG00000022518	SMG6	71	57.562	ENSAPEG00000019101	smg6	74	54.922	Amphiprion_percula
ENSSBOG00000022518	SMG6	83	53.245	ENSATEG00000006483	smg6	73	54.503	Anabas_testudineus
ENSSBOG00000022518	SMG6	88	57.256	ENSACAG00000011783	SMG6	99	58.504	Anolis_carolinensis
ENSSBOG00000022518	SMG6	100	96.476	ENSANAG00000035760	SMG6	100	98.263	Aotus_nancymaae
ENSSBOG00000022518	SMG6	71	57.235	ENSACLG00000005288	smg6	80	55.191	Astatotilapia_calliptera
ENSSBOG00000022518	SMG6	68	60.747	ENSAMXG00000017326	smg6	99	50.481	Astyanax_mexicanus
ENSSBOG00000022518	SMG6	100	91.050	ENSBTAG00000000267	SMG6	100	92.741	Bos_taurus
ENSSBOG00000022518	SMG6	100	95.631	ENSCJAG00000001820	SMG6	100	97.393	Callithrix_jacchus
ENSSBOG00000022518	SMG6	100	91.191	ENSCAFG00000019260	SMG6	100	92.882	Canis_familiaris
ENSSBOG00000022518	SMG6	100	91.191	ENSCAFG00020009770	SMG6	100	92.882	Canis_lupus_dingo
ENSSBOG00000022518	SMG6	100	90.909	ENSCHIG00000021998	SMG6	100	92.600	Capra_hircus
ENSSBOG00000022518	SMG6	100	92.037	ENSTSYG00000003406	SMG6	100	97.260	Carlito_syrichta
ENSSBOG00000022518	SMG6	98	75.252	ENSCAPG00000016197	SMG6	99	82.436	Cavia_aperea
ENSSBOG00000022518	SMG6	100	88.873	ENSCPOG00000014878	SMG6	100	90.563	Cavia_porcellus
ENSSBOG00000022518	SMG6	100	96.476	ENSCCAG00000035801	SMG6	100	98.238	Cebus_capucinus
ENSSBOG00000022518	SMG6	100	94.010	ENSCATG00000031956	SMG6	100	95.631	Cercocebus_atys
ENSSBOG00000022518	SMG6	100	90.486	ENSCLAG00000006748	SMG6	100	92.178	Chinchilla_lanigera
ENSSBOG00000022518	SMG6	100	94.362	ENSCSAG00000013800	SMG6	100	95.983	Chlorocebus_sabaeus
ENSSBOG00000022518	SMG6	58	98.507	ENSCHOG00000005024	-	73	98.507	Choloepus_hoffmanni
ENSSBOG00000022518	SMG6	100	70.972	ENSCPBG00000020369	SMG6	100	73.056	Chrysemys_picta_bellii
ENSSBOG00000022518	SMG6	98	94.096	ENSCANG00000031764	SMG6	100	98.239	Colobus_angolensis_palliatus
ENSSBOG00000022518	SMG6	56	86.701	ENSCGRG00001019595	Smg6	98	86.701	Cricetulus_griseus_chok1gshd
ENSSBOG00000022518	SMG6	98	82.709	ENSCGRG00000007782	Smg6	100	84.510	Cricetulus_griseus_crigri
ENSSBOG00000022518	SMG6	71	57.632	ENSCSEG00000012757	smg6	82	53.135	Cynoglossus_semilaevis
ENSSBOG00000022518	SMG6	72	55.475	ENSCVAG00000012789	smg6	74	53.569	Cyprinodon_variegatus
ENSSBOG00000022518	SMG6	100	48.658	ENSDARG00000100481	smg6	100	50.404	Danio_rerio
ENSSBOG00000022518	SMG6	100	90.909	ENSDNOG00000048283	SMG6	100	92.600	Dasypus_novemcinctus
ENSSBOG00000022518	SMG6	100	87.158	ENSDORG00000016614	Smg6	94	98.198	Dipodomys_ordii
ENSSBOG00000022518	SMG6	94	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSSBOG00000022518	SMG6	68	47.957	ENSEBUG00000005059	smg6	68	48.835	Eptatretus_burgeri
ENSSBOG00000022518	SMG6	99	92.025	ENSEASG00005009318	SMG6	99	93.719	Equus_asinus_asinus
ENSSBOG00000022518	SMG6	99	91.743	ENSECAG00000006519	SMG6	99	93.437	Equus_caballus
ENSSBOG00000022518	SMG6	100	80.338	ENSEEUG00000003493	SMG6	100	82.030	Erinaceus_europaeus
ENSSBOG00000022518	SMG6	71	58.889	ENSELUG00000005934	smg6	67	56.659	Esox_lucius
ENSSBOG00000022518	SMG6	100	92.037	ENSFCAG00000028817	SMG6	100	93.728	Felis_catus
ENSSBOG00000022518	SMG6	98	70.747	ENSFALG00000006538	SMG6	100	72.210	Ficedula_albicollis
ENSSBOG00000022518	SMG6	100	90.204	ENSFDAG00000015106	SMG6	100	91.825	Fukomys_damarensis
ENSSBOG00000022518	SMG6	83	51.286	ENSFHEG00000013282	smg6	75	53.162	Fundulus_heteroclitus
ENSSBOG00000022518	SMG6	100	70.437	ENSGALG00000003108	SMG6	98	71.914	Gallus_gallus
ENSSBOG00000022518	SMG6	83	52.273	ENSGAFG00000000379	smg6	74	54.176	Gambusia_affinis
ENSSBOG00000022518	SMG6	91	52.788	ENSGACG00000020521	smg6	100	53.978	Gasterosteus_aculeatus
ENSSBOG00000022518	SMG6	98	70.718	ENSGAGG00000025617	SMG6	100	72.850	Gopherus_agassizii
ENSSBOG00000022518	SMG6	100	94.574	ENSGGOG00000017156	SMG6	100	96.195	Gorilla_gorilla
ENSSBOG00000022518	SMG6	83	52.927	ENSHBUG00000021311	smg6	74	55.269	Haplochromis_burtoni
ENSSBOG00000022518	SMG6	100	90.218	ENSHGLG00000012882	SMG6	100	91.907	Heterocephalus_glaber_female
ENSSBOG00000022518	SMG6	100	90.289	ENSHGLG00100017815	SMG6	100	91.977	Heterocephalus_glaber_male
ENSSBOG00000022518	SMG6	76	54.409	ENSHCOG00000008761	smg6	97	53.728	Hippocampus_comes
ENSSBOG00000022518	SMG6	85	52.705	ENSIPUG00000012493	smg6	75	54.510	Ictalurus_punctatus
ENSSBOG00000022518	SMG6	100	92.178	ENSSTOG00000028127	SMG6	100	93.869	Ictidomys_tridecemlineatus
ENSSBOG00000022518	SMG6	80	87.868	ENSJJAG00000015367	Smg6	95	85.962	Jaculus_jaculus
ENSSBOG00000022518	SMG6	72	57.066	ENSKMAG00000000279	smg6	76	53.752	Kryptolebias_marmoratus
ENSSBOG00000022518	SMG6	86	51.355	ENSLBEG00000002184	smg6	76	52.919	Labrus_bergylta
ENSSBOG00000022518	SMG6	56	58.730	ENSLACG00000000806	-	98	58.974	Latimeria_chalumnae
ENSSBOG00000022518	SMG6	73	63.440	ENSLOCG00000006448	smg6	86	60.420	Lepisosteus_oculatus
ENSSBOG00000022518	SMG6	100	90.980	ENSLAFG00000001261	SMG6	100	92.671	Loxodonta_africana
ENSSBOG00000022518	SMG6	100	94.292	ENSMFAG00000003394	SMG6	100	95.913	Macaca_fascicularis
ENSSBOG00000022518	SMG6	100	94.221	ENSMMUG00000023161	SMG6	100	95.842	Macaca_mulatta
ENSSBOG00000022518	SMG6	100	89.389	ENSMNEG00000044592	SMG6	100	91.005	Macaca_nemestrina
ENSSBOG00000022518	SMG6	98	91.709	ENSMLEG00000029353	SMG6	100	98.308	Mandrillus_leucophaeus
ENSSBOG00000022518	SMG6	83	54.382	ENSMAMG00000020119	smg6	79	56.034	Mastacembelus_armatus
ENSSBOG00000022518	SMG6	71	57.235	ENSMZEG00005024736	smg6	74	55.156	Maylandia_zebra
ENSSBOG00000022518	SMG6	74	65.752	ENSMGAG00000005401	-	99	65.752	Meleagris_gallopavo
ENSSBOG00000022518	SMG6	100	93.023	ENSMICG00000012913	SMG6	100	94.715	Microcebus_murinus
ENSSBOG00000022518	SMG6	100	45.833	ENSMMOG00000010883	smg6	100	47.661	Mola_mola
ENSSBOG00000022518	SMG6	100	84.177	ENSMODG00000010622	SMG6	100	85.654	Monodelphis_domestica
ENSSBOG00000022518	SMG6	83	53.069	ENSMALG00000001106	smg6	73	55.245	Monopterus_albus
ENSSBOG00000022518	SMG6	100	89.570	MGP_CAROLIEiJ_G0016729	Smg6	100	91.191	Mus_caroli
ENSSBOG00000022518	SMG6	100	89.500	ENSMUSG00000038290	Smg6	100	91.121	Mus_musculus
ENSSBOG00000022518	SMG6	100	88.936	MGP_PahariEiJ_G0017866	Smg6	100	90.557	Mus_pahari
ENSSBOG00000022518	SMG6	100	89.429	MGP_SPRETEiJ_G0017572	Smg6	100	91.050	Mus_spretus
ENSSBOG00000022518	SMG6	100	91.402	ENSMPUG00000013046	SMG6	100	93.094	Mustela_putorius_furo
ENSSBOG00000022518	SMG6	100	91.191	ENSMLUG00000005739	SMG6	100	92.882	Myotis_lucifugus
ENSSBOG00000022518	SMG6	98	88.265	ENSNGAG00000007287	Smg6	100	89.921	Nannospalax_galili
ENSSBOG00000022518	SMG6	83	52.201	ENSNBRG00000009511	smg6	81	54.667	Neolamprologus_brichardi
ENSSBOG00000022518	SMG6	98	93.831	ENSNLEG00000017171	SMG6	100	98.434	Nomascus_leucogenys
ENSSBOG00000022518	SMG6	98	80.316	ENSMEUG00000015804	SMG6	100	81.825	Notamacropus_eugenii
ENSSBOG00000022518	SMG6	61	90.909	ENSOPRG00000000579	SMG6	84	96.842	Ochotona_princeps
ENSSBOG00000022518	SMG6	100	82.502	ENSODEG00000008038	SMG6	100	87.355	Octodon_degus
ENSSBOG00000022518	SMG6	100	49.899	ENSONIG00000005594	smg6	100	52.003	Oreochromis_niloticus
ENSSBOG00000022518	SMG6	100	90.852	ENSOCUG00000013018	SMG6	100	92.752	Oryctolagus_cuniculus
ENSSBOG00000022518	SMG6	88	50.595	ENSORLG00000003317	smg6	79	52.706	Oryzias_latipes
ENSSBOG00000022518	SMG6	88	50.894	ENSORLG00020015343	smg6	78	52.487	Oryzias_latipes_hni
ENSSBOG00000022518	SMG6	88	50.632	ENSORLG00015020454	smg6	79	52.741	Oryzias_latipes_hsok
ENSSBOG00000022518	SMG6	83	51.684	ENSOMEG00000010838	smg6	75	53.931	Oryzias_melastigma
ENSSBOG00000022518	SMG6	100	92.324	ENSOGAG00000004483	SMG6	100	94.014	Otolemur_garnettii
ENSSBOG00000022518	SMG6	100	89.296	ENSOARG00000015076	SMG6	100	92.563	Ovis_aries
ENSSBOG00000022518	SMG6	100	94.503	ENSPPAG00000043296	SMG6	100	96.124	Pan_paniscus
ENSSBOG00000022518	SMG6	100	92.107	ENSPPRG00000014581	SMG6	100	93.798	Panthera_pardus
ENSSBOG00000022518	SMG6	98	92.130	ENSPTIG00000008925	SMG6	100	97.847	Panthera_tigris_altaica
ENSSBOG00000022518	SMG6	100	94.362	ENSPTRG00000008544	SMG6	100	98.434	Pan_troglodytes
ENSSBOG00000022518	SMG6	100	94.503	ENSPANG00000024588	SMG6	100	96.124	Papio_anubis
ENSSBOG00000022518	SMG6	89	71.149	ENSPSIG00000006660	SMG6	96	71.228	Pelodiscus_sinensis
ENSSBOG00000022518	SMG6	100	48.114	ENSPMGG00000000844	smg6	100	60.614	Periophthalmus_magnuspinnatus
ENSSBOG00000022518	SMG6	100	90.345	ENSPEMG00000020707	Smg6	100	91.966	Peromyscus_maniculatus_bairdii
ENSSBOG00000022518	SMG6	100	50.201	ENSPFOG00000012035	smg6	100	51.442	Poecilia_formosa
ENSSBOG00000022518	SMG6	76	54.841	ENSPLAG00000017660	smg6	74	54.301	Poecilia_latipinna
ENSSBOG00000022518	SMG6	76	54.957	ENSPMEG00000000258	smg6	74	54.617	Poecilia_mexicana
ENSSBOG00000022518	SMG6	83	52.904	ENSPREG00000010066	smg6	74	54.510	Poecilia_reticulata
ENSSBOG00000022518	SMG6	100	89.100	ENSPPYG00000007790	SMG6	100	90.717	Pongo_abelii
ENSSBOG00000022518	SMG6	100	87.033	ENSPCAG00000000552	SMG6	100	88.724	Procavia_capensis
ENSSBOG00000022518	SMG6	100	92.812	ENSPCOG00000020925	SMG6	100	94.503	Propithecus_coquereli
ENSSBOG00000022518	SMG6	86	100.000	ENSPVAG00000002159	SMG6	86	100.000	Pteropus_vampyrus
ENSSBOG00000022518	SMG6	83	53.684	ENSPNYG00000024151	smg6	79	57.362	Pundamilia_nyererei
ENSSBOG00000022518	SMG6	84	50.550	ENSPNAG00000015480	smg6	90	47.471	Pygocentrus_nattereri
ENSSBOG00000022518	SMG6	100	89.782	ENSRNOG00000003041	Smg6	100	91.402	Rattus_norvegicus
ENSSBOG00000022518	SMG6	100	94.292	ENSRBIG00000024746	SMG6	100	95.913	Rhinopithecus_bieti
ENSSBOG00000022518	SMG6	100	94.362	ENSRROG00000030423	SMG6	100	97.847	Rhinopithecus_roxellana
ENSSBOG00000022518	SMG6	98	83.286	ENSSHAG00000010045	SMG6	98	84.792	Sarcophilus_harrisii
ENSSBOG00000022518	SMG6	72	60.465	ENSSFOG00015005436	smg6	75	55.160	Scleropages_formosus
ENSSBOG00000022518	SMG6	83	53.804	ENSSMAG00000019777	smg6	73	54.638	Scophthalmus_maximus
ENSSBOG00000022518	SMG6	83	53.203	ENSSDUG00000016412	smg6	74	54.680	Seriola_dumerili
ENSSBOG00000022518	SMG6	79	53.140	ENSSLDG00000020747	smg6	77	53.672	Seriola_lalandi_dorsalis
ENSSBOG00000022518	SMG6	99	68.759	ENSSPUG00000007152	SMG6	99	70.084	Sphenodon_punctatus
ENSSBOG00000022518	SMG6	71	57.064	ENSSPAG00000015633	smg6	74	54.474	Stegastes_partitus
ENSSBOG00000022518	SMG6	100	90.563	ENSSSCG00000017826	SMG6	100	92.254	Sus_scrofa
ENSSBOG00000022518	SMG6	100	71.038	ENSTGUG00000005836	SMG6	100	72.581	Taeniopygia_guttata
ENSSBOG00000022518	SMG6	100	47.776	ENSTRUG00000000358	smg6	100	49.157	Takifugu_rubripes
ENSSBOG00000022518	SMG6	100	48.114	ENSTNIG00000016164	smg6	100	49.835	Tetraodon_nigroviridis
ENSSBOG00000022518	SMG6	100	87.879	ENSTBEG00000011424	SMG6	100	89.570	Tupaia_belangeri
ENSSBOG00000022518	SMG6	91	88.316	ENSTTRG00000001175	SMG6	91	91.515	Tursiops_truncatus
ENSSBOG00000022518	SMG6	100	91.491	ENSUAMG00000025152	SMG6	100	93.156	Ursus_americanus
ENSSBOG00000022518	SMG6	98	91.769	ENSUMAG00000009306	SMG6	100	93.502	Ursus_maritimus
ENSSBOG00000022518	SMG6	75	96.296	ENSVPAG00000000225	SMG6	88	96.296	Vicugna_pacos
ENSSBOG00000022518	SMG6	100	91.121	ENSVVUG00000021727	SMG6	100	92.812	Vulpes_vulpes
ENSSBOG00000022518	SMG6	98	57.787	ENSXETG00000023799	SMG6	100	58.906	Xenopus_tropicalis
ENSSBOG00000022518	SMG6	76	55.838	ENSXCOG00000009867	smg6	74	54.980	Xiphophorus_couchianus
ENSSBOG00000022518	SMG6	83	52.973	ENSXMAG00000010321	smg6	74	54.574	Xiphophorus_maculatus